Variant information

Chr07:2561279 - 2565690

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2561443CG632516.771.00DOWNSTREAM(|4957||None|Vigan.07G036300.01), UPSTREAM(|1574||None|Vigan.07G036400.01), UTR_3_PRIME(|168||None|Vigan.07G036500.01)Vigna nepalensis
2562058AG562281.771.00DOWNSTREAM(|4557||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2189||None|Vigan.07G036400.01)Vigna nepalensis
2562082TA572349.771.00DOWNSTREAM(|4533||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2213||None|Vigan.07G036400.01)Vigna nepalensis
2562495TC461939.771.00DOWNSTREAM(|4120||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2626||None|Vigan.07G036400.01)Vigna nepalensis
2562585GT612361.771.00DOWNSTREAM(|4030||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2716||None|Vigan.07G036400.01)Vigna nepalensis
2562734CT582306.771.00DOWNSTREAM(|3881||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2865||None|Vigan.07G036400.01)Vigna nepalensis
2562801AG572478.771.00DOWNSTREAM(|3814||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2932||None|Vigan.07G036400.01)Vigna nepalensis
2562850AT622800.771.00DOWNSTREAM(|3765||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2981||None|Vigan.07G036400.01)Vigna nepalensis
2562869AC743188.811.00DOWNSTREAM(|3746||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|3000||None|Vigan.07G036400.01)Vigna nepalensis
2562905AG702804.771.00DOWNSTREAM(|3710||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|3036||None|Vigan.07G036400.01)Vigna nepalensis
2562938CG662619.771.00DOWNSTREAM(|3677||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|3069||None|Vigan.07G036400.01)Vigna nepalensis
2562975AT602414.771.00DOWNSTREAM(|3640||None|Vigan.07G036600.01), NON_SYNONYMOUS_CODING(MISSENSE|Tct/Act|S160T|None|Vigan.07G036500.01), UPSTREAM(|3106||None|Vigan.07G036400.01)Vigna nepalensis
2563647AG552220.771.00DOWNSTREAM(|2968||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|3778||None|Vigan.07G036400.01)Vigna nepalensis
2564029CT482019.771.00DOWNSTREAM(|2586||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|4160||None|Vigan.07G036400.01)Vigna nepalensis
2564153AT351400.771.00DOWNSTREAM(|2462||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|4284||None|Vigan.07G036400.01)Vigna nepalensis
2564487CA28975.771.00DOWNSTREAM(|2128||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|4618||None|Vigan.07G036400.01)Vigna nepalensis
2564892AT582614.771.00DOWNSTREAM(|1723||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01)Vigna nepalensis
2564894CT592614.771.00DOWNSTREAM(|1721||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01)Vigna nepalensis
2565193AT441724.771.00DOWNSTREAM(|1422||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01)Vigna nepalensis
2565252AC572284.771.00DOWNSTREAM(|1363||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01)Vigna nepalensis
2565288GT552181.771.00DOWNSTREAM(|1327||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01)Vigna nepalensis
2565646TA391479.771.00DOWNSTREAM(|969||None|Vigan.07G036600.01), START_GAINED(|||None|Vigan.07G036500.01), UTR_5_PRIME(|221||None|Vigan.07G036500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2561454CCT622129.731.00DOWNSTREAM(|4969||None|Vigan.07G036300.01), UPSTREAM(|1586||None|Vigan.07G036400.01), UTR_3_PRIME(|156||None|Vigan.07G036500.01)Vigna nepalensis
2562786GGA542515.731.00DOWNSTREAM(|3828||None|Vigan.07G036600.01), INTRON(|||None|Vigan.07G036500.01), UPSTREAM(|2918||None|Vigan.07G036400.01)Vigna nepalensis
2565689CGATTTTC261123.731.00DOWNSTREAM(|925||None|Vigan.07G036600.01), INTERGENIC(||||), INTRAGENIC(|||None|), UPSTREAM(|0||None|Vigan.07G036500.01), UTR_5_PRIME(|265||None|Vigan.07G036500.01)Vigna nepalensis