VIGGS:GBrowse

Vigan.06G204100.01

Basic Information:

Name:	Vigan.06G204100.01 Multiple alignment Variant Information
Position:	Chr06:33940902..33942649 (+ strand)
Length:	1748

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LJX5, Glycine max]
InterPro:	Pentatricopeptide repeat (IPR002885)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2.47,4.89,3.66,3.31,7.61,7.24,7.19,2.89
Arabidopsis thaliana homolog:	AT3G46870.1

Automatic updates:

Name:	NM_001251773 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max pentatricopeptide repeat-containing protein (LOC100306428), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:33940902..33941028 (+ strand)
Length:	127
Type:	five_prime_UTR

Position:	Chr06:33941029..33941403 (+ strand)
Length:	375
Type:	CDS

Position:	Chr06:33941846..33942235 (+ strand)
Length:	390
Type:	CDS

Position:	Chr06:33942236..33942649 (+ strand)
Length:	414
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G204100.01 class=Sequence position=Chr06:33940902..33942649 (+ strand)
GCTTCCTCAG GAAAAAAAAA ACATAGCGTT GGTTTGAGTA TCGAACGAAC TGATCGGGAT ATCAGTTTCC AAACCCAAAT
CGCAGAGTGA GTTATCTGTG TTAGTATTTC AGTGGCAGTG CGGTGTGATG GCCAGTCGTT CCTTCTCGAA AGTTCGGAAA
ATCTGTGATT TTGGTTCTTT ATTAGTGGGA CAGCTTACGA GAGCTACTAA ACTTATCGAA CATGGTTCAG CTCCACTGCC
CTTCGTTGAA TCTACTTCAT TCAAAACGGC GTCGTGTTGG AGGCAATACC ACGACGGAAG GCCCAGAGGC CCCCTTTGGA
GGGGAAAGAA GCTCATTGGC AAAGAAGCGC TCTTTGTGAT ACTGGGTTTG AAGAGGTTTA AGGATGACGA GGATAAACTT
CACAAGTTCA TCAAATCTCA CGTTCTCAGA CTCTTGAAGA TGGATATGAT CGCCGTTCTC ACTGAACTTG AGCGTCAAGA
ACAAGTTTCT CTCGCTCTCA AGGTTTTCAC TTTTCTAATT CTTGTGCATT TTTAATTTTC ACGTTTTTAG CCCATAACCT
GTTTGTCATA ATGCTTCTTA GTCCTAACCT GTTTGTTATT ATGACAACTA TTATGAGGTT TAATTCATCA CTGTCTCTTG
AACGATTTGG GAATTTTTAA TCTGGTCCTA AACTAAAATA AATTATAATT GGATCTAACT CTTCTGTGAT ACTTGTAATT
AGGTTGTTAG AAATCACTAT TTTTCTGCTA TTTGAAATCA TCATAAACTA ACTTCAGGGA CTCAGATATA ATTTTGTATA
ACAAAGTACC TAATTGCAAT TTAAGGACCT CATTAAAAAT TCCCAAAAAT GTTTAGGACA TACTGATGTA TTAAACCTTC
CTATTATAGC TGTACACTTC TTATTGTACG GAGGTTACAA GTGATTAACT GAATGAATTT TCAGATGTTT AAGGTTATGC
AAAAGCAAGA TTGGTACAAG CCTGATACAT TCCTTTATAA GGACTTAATC ATCGCATTGG CAAGGTCCAA AAAAATGGAC
GAAGTGTCCC AATTGTGGGA AAGCATGCGA AAGGAAAATT TGTTCCCTGA TTGTCAGACT TATACTGAAG TCATAAGGGG
CTTCTTGAAC TATGGATCTC CTGCGGATGC GATGAACATA TATGAGGACA TGAAGAATTC TCCGGATCCA CCTGACGAGT
TGCCATTCAG AATTTTATTG AAAGGACTCC TGCCACATCC TCTTTTGAGA AACAAAGTGA AACAAGATTT TGAGGAGATT
TTTCCTGATT CAAATATCTA TGATCCACCA CAAGAGATAT TTGGCGCTCG CTGAGGTTTG AACTCCCTTC ACTCTGTCAT
CCCGGGAGTT CGGTGATTTG CTTTAAAATA TAAATGGTAT TTTATTTTTG TTTTGCTCAT AAGCTGTCTT ACGGGCACAG
TAAAACGTAA ATGAGTTTAA TTAGATAGAA TGTGGGTCAA TAGGTTCTAT GTTAGTGTAA TCGGGTAGTC AATTTTTCCA
TCAAATAGAT GATGAGAAGA TTGTCAAGTT TGATAGCACG AATCTGGCTT ATTGAATGAA AACTGTGCGG AGAAATTTAA
GTGAAGAATG AGTGGATTTT AACTTAGGTC ATTAGAAATT AGAAATATGA CAATGCCATC GAATTCCAGT TATTATCCTC
TGACATGTTA TGACGTTGCT ACTTTGGTTG TTTAGATTTT TACTATGCAT CATCTATTCA TTTTTTAA

[show][hide][copy]TRANSCRIPT

>Vigan.06G204100.01
GCTTCCTCAG GAAAAAAAAA ACATAGCGTT GGTTTGAGTA TCGAACGAAC TGATCGGGAT ATCAGTTTCC AAACCCAAAT
CGCAGAGTGA GTTATCTGTG TTAGTATTTC AGTGGCAGTG CGGTGTGATG GCCAGTCGTT CCTTCTCGAA AGTTCGGAAA
ATCTGTGATT TTGGTTCTTT ATTAGTGGGA CAGCTTACGA GAGCTACTAA ACTTATCGAA CATGGTTCAG CTCCACTGCC
CTTCGTTGAA TCTACTTCAT TCAAAACGGC GTCGTGTTGG AGGCAATACC ACGACGGAAG GCCCAGAGGC CCCCTTTGGA
GGGGAAAGAA GCTCATTGGC AAAGAAGCGC TCTTTGTGAT ACTGGGTTTG AAGAGGTTTA AGGATGACGA GGATAAACTT
CACAAGTTCA TCAAATCTCA CGTTCTCAGA CTCTTGAAGA TGGATATGAT CGCCGTTCTC ACTGAACTTG AGCGTCAAGA
ACAAGTTTCT CTCGCTCTCA AGATGTTTAA GGTTATGCAA AAGCAAGATT GGTACAAGCC TGATACATTC CTTTATAAGG
ACTTAATCAT CGCATTGGCA AGGTCCAAAA AAATGGACGA AGTGTCCCAA TTGTGGGAAA GCATGCGAAA GGAAAATTTG
TTCCCTGATT GTCAGACTTA TACTGAAGTC ATAAGGGGCT TCTTGAACTA TGGATCTCCT GCGGATGCGA TGAACATATA
TGAGGACATG AAGAATTCTC CGGATCCACC TGACGAGTTG CCATTCAGAA TTTTATTGAA AGGACTCCTG CCACATCCTC
TTTTGAGAAA CAAAGTGAAA CAAGATTTTG AGGAGATTTT TCCTGATTCA AATATCTATG ATCCACCACA AGAGATATTT
GGCGCTCGCT GAGGTTTGAA CTCCCTTCAC TCTGTCATCC CGGGAGTTCG GTGATTTGCT TTAAAATATA AATGGTATTT
TATTTTTGTT TTGCTCATAA GCTGTCTTAC GGGCACAGTA AAACGTAAAT GAGTTTAATT AGATAGAATG TGGGTCAATA
GGTTCTATGT TAGTGTAATC GGGTAGTCAA TTTTTCCATC AAATAGATGA TGAGAAGATT GTCAAGTTTG ATAGCACGAA
TCTGGCTTAT TGAATGAAAA CTGTGCGGAG AAATTTAAGT GAAGAATGAG TGGATTTTAA CTTAGGTCAT TAGAAATTAG
AAATATGACA ATGCCATCGA ATTCCAGTTA TTATCCTCTG ACATGTTATG ACGTTGCTAC TTTGGTTGTT TAGATTTTTA
CTATGCATCA TCTATTCATT TTTTAA

[show][hide][copy]CDS

>Vigan.06G204100.01
ATGGCCAGTC GTTCCTTCTC GAAAGTTCGG AAAATCTGTG ATTTTGGTTC TTTATTAGTG GGACAGCTTA CGAGAGCTAC
TAAACTTATC GAACATGGTT CAGCTCCACT GCCCTTCGTT GAATCTACTT CATTCAAAAC GGCGTCGTGT TGGAGGCAAT
ACCACGACGG AAGGCCCAGA GGCCCCCTTT GGAGGGGAAA GAAGCTCATT GGCAAAGAAG CGCTCTTTGT GATACTGGGT
TTGAAGAGGT TTAAGGATGA CGAGGATAAA CTTCACAAGT TCATCAAATC TCACGTTCTC AGACTCTTGA AGATGGATAT
GATCGCCGTT CTCACTGAAC TTGAGCGTCA AGAACAAGTT TCTCTCGCTC TCAAGATGTT TAAGGTTATG CAAAAGCAAG
ATTGGTACAA GCCTGATACA TTCCTTTATA AGGACTTAAT CATCGCATTG GCAAGGTCCA AAAAAATGGA CGAAGTGTCC
CAATTGTGGG AAAGCATGCG AAAGGAAAAT TTGTTCCCTG ATTGTCAGAC TTATACTGAA GTCATAAGGG GCTTCTTGAA
CTATGGATCT CCTGCGGATG CGATGAACAT ATATGAGGAC ATGAAGAATT CTCCGGATCC ACCTGACGAG TTGCCATTCA
GAATTTTATT GAAAGGACTC CTGCCACATC CTCTTTTGAG AAACAAAGTG AAACAAGATT TTGAGGAGAT TTTTCCTGAT
TCAAATATCT ATGATCCACC ACAAGAGATA TTTGGCGCTC GCTGA

[show][hide][copy]PROTEIN

>Vigan.06G204100.01
MASRSFSKVR KICDFGSLLV GQLTRATKLI EHGSAPLPFV ESTSFKTASC WRQYHDGRPR GPLWRGKKLI GKEALFVILG
LKRFKDDEDK LHKFIKSHVL RLLKMDMIAV LTELERQEQV SLALKMFKVM QKQDWYKPDT FLYKDLIIAL ARSKKMDEVS
QLWESMRKEN LFPDCQTYTE VIRGFLNYGS PADAMNIYED MKNSPDPPDE LPFRILLKGL LPHPLLRNKV KQDFEEIFPD
SNIYDPPQEI FGAR*