GBrowse Details

Vigan.06G166800.01

Basic Information:
Name: Vigan.06G166800.01
Multiple alignment
Variant Information
Position: Chr06:29926898..29930122 (+ strand)
Length: 3225
Functional Information:
Description: Similar to Uncharacterized protein. [I1LKS6, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,0.02,3.36,3.94,3.76,0.90,5.49,22.04
Arabidopsis thaliana homolog: AT1G08290.1
Automatic updates:
Name: NM_001254472 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein TRANSPARENT TESTA 1-like (LOC100802773), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:29926898..29927042 (+ strand)
Length: 145
Type: five_prime_UTR
Position: Chr06:29927043..29927561 (+ strand)
Length: 519
Type: CDS
Position: Chr06:29929213..29929662 (+ strand)
Length: 450
Type: CDS
Position: Chr06:29929663..29930122 (+ strand)
Length: 460
Type: three_prime_UTR

>Vigan.06G166800.01 class=Sequence position=Chr06:29926898..29930122 (+ strand)
CAAAGCCTCC ATTCCTTAAT CAAACCATAT TATAAGTGCA GGCTTTCTAC CATAAAGTCT GAACATACAC ACACATATAC
ATAACATAAC ATAACCCTTT TCTGAGGAAG AGAGAAGATA ATTCTCTAAA TCCAACAAGG GTTTGATGGA GTGCAATGTG
GAGAACAATA AGAATCTATA CCTTCATGCT CCTACTTTCA TTGAGTGGCT CAAACCATGT TCTTCTCCTT CATATCTAAA
TTCCAACACA ATATCTACTT CTTCTTCTTC TTCTTCTTCA TCTTTTTTTT CTTCTTTTTC CTTCACCCAG CATGACCTTG
TTCATGAAAC CATCCAATTC TTGCCCATTG AGGCCTCAAA AGATGAAGCC CACCATCAAA GTTTTGAGGT GAAAGAGGAA
AAGCTTGAAC AAGTCACTGT GGCTTTGCAC ATTGGTTTGC CTGACAGTGC TAAAAGGCAT CATGAGGTTG TTGATGATGA
TGATGAGAAG ATGATTTTCC ATGTCAAGGA AGAAGAAGCT TCCTCCAAGA GAAGCTTCCA TGGCTGCTCC TTTAACCAAG
AGAGAAGGTT CTGGATTCCA ACCCCAGCTC AGATCCTCGT TGGACCGATG CAGTTTGCTT GCTCCATATG CAGCAAAACC
TTCAATAGGT ATAACAACAT GCAGGTTAGT TAAATTGCTT CTCAACTTCT CACATATCTT AATTTTGAAA CTTGATTTGC
CAAGAAAAGT AGAAAAATAT TGTTGAAGAA AGTTGCAACT GTGAATTAAT TAGAGACAAA AGATCATAAT GATGTCTAAG
TAAAGTTAAC AGATGTTTAT GAAGAAGACA AATGAAGAAG CTTTATTATA AAGATGAAGT ATGAACAGTA CAGGTTGAAA
GTTTGATCCA TTTTAATTTT TTCATATCTG TGGAGAATTT CTTTGTAGCA GAAGTTAGGA GCTGATCATG TTGATAAGAT
CACCACCACT ATGAGGGAAT ATAGTTGTTG CACATGCCTG ATCTACCTTT GAAACATGAT CACAATAATT AATTACGATT
TGTTTCAATT AAAACTAAAC ATACTGATTA ACTTATGTGA TTCCTCTAAT GAGATTTCAA GATTCATTGG GTGGAGAAAT
GCAAGCTTAT TAGTACTATC ATGTACTCAC TCAAAGACTT TGCACCCCAC TTGCGACAAA CTTTGTTTCA GATTTTATCA
TCACCTCAGA AATTGCCTCC AGTTTTATTT CAGAAAAAAA GCACAATACA ATTAATTATT ACGTCCTTTG CTACTAAAAG
ACAAAATTTT ATTATGTGTA GCATTTCAAT GGTGAGTTTA GCTACCTAGC TAGGTATATT CAGAAAAAAG AAGTTATGAT
GAAGGAGTTC TTTCTGTTCT ATAAATAATT GCTGCAACTA TGATCATGTT ATCATACTTA AAATACAACG ATCACTTTCA
GAAGAAATTT CTTGTAACAT ATACATGCAT TTCATCGAAA CCAAACTCAT GAGCAGAGTC AATAATTGTT TTGTTTTCCA
CAACTACTCT TTAACTTTGT ACAGCATTGA GTAGTTTTCC ATGGCTTGTG TGCATATATA TACCTACTGA ATTTGAATTC
GCTGCATTTT ATCCATACCA AACTGAAGTA GATGCTTTAC ATGATAATGA CAATGATGAT AATCATTAAA AAGAGATTAA
ATAGTCACAT AATTTAACTT TAATTAGCAT GCTTTAAGAA AAAAATGCAC TAGGTGGCGC GTACGTGATG TCCCTCAAGC
CTTTCCCCGT CACTTTTAAA TTAAAAGCTT CTTTTTCATC AATTCATCTC AAAGGGGAAT ATTGTAATTA TCTTCATATG
CATGCATGCT TTTACTTCCT TTCCAATGCA TAATCTTCAT CCATATATAA GCCAAGGTTG AGAAAGAAAT TAACTACTTA
AACCTTTGAA TTTTTAGTTT TAATTACATT GTATATGTGT GTTTCTATAT ATATATGTAG AATTTCTGAT TTCAAATAGA
TAGATACAAA AAAATGTTAG ACCCATCACT TAAGATTAAT GATTATTTGC AGCAATGGCC ACAGTTAGGC CACAAAAAGG
ACTAAAGGAC TATACTTGGT CAAATATAGT AGGCTTCATT GTTTTTTGAA ACAAGAAATA TAAATGTAAC TTTTGAACGG
TAAAGATTGA ACTAGAGAAA TAAAAAGAAA CTAAAGAAAA TAAAAAGTTT TCCAAGAAAG TTTAACTAAG ATCAATTAAT
TAATGAGCAT GAATGTGTAT GTACTCTAAT TATGTGAATT CAATTCAACT GAACTTAATT TTTGTTGATT TGCAGATGCA
TATGTGGGGT CATGGATCAG AATTTAGGAA AGGACCAGAT TCACTGAAAG GAACACAACC AGCAGCAATG TTAAGGTTGC
CATGTTACTG CTGCGCGCAG GGTTGCAAGA ACAACATCAA CCATCCAAGG GCGAAGCCTT TGAAGGACTT CAGAACCCTC
CAAACGCACT ACAAAAGGAA GCACGGCACA AAGCCTTTTA TGTGCAGAAA ATGTGGGAAA ACATTTGCAG TGAAAGGTGA
TTGGAGGACT CACGAGAAGA ACTGTGGCAA GTTGTGGTAC TGCACTTGTG GCTCAGACTT CAAGCACAAA AGATCACTTA
AGGACCATAT TAGGTCCTTT GGAAAGGGAC ACAACCCTCA TCCTCCCTTT GAAGCTTTTG AGGATGAGAA GGAATGCATC
ACTGGCTCTG ATGAAGATGA GCTCAATGCT CATCATCATG CATGATCTGA TTAACATTCT ACAGCTTTTC CTCATTACCA
AACAAAAAAG TTGCAGACAA ATGTGGTGGA TGCAGCTATG GTTTTAGAAC CTTGAGTAGT GGTAATTGTA GTAGAGAGAG
TTTGGTCAGT ACCCTTGTGC TCAGTAACAA AAAATTCTCA ACAATGCTGA GACATGAAGG CTCAGGGAAA GGTTTGCTAC
CGAGCACTCG CAGGGTGGTG ATGAGCTATC AGTAGAGGTT TGAACTGAAT TTGCATGCTT TTGGTTAGCT AATAAGATGG
TGCCTCAAGT GATGAAGTAG ATGAATTTTC TTGGCATAGT CACAGAGACA AAGTGTTATG TCATGTTTAC TTTTCTGTAA
AATATGGAGG AAATTTATCC GCTTCATTAC TCAATGGTAA CCCTCATTCT AGGACTTTAT AATACCATGT AAAGTCTTGT
TTAAATATTT CTTATGAATT TGCTG

>Vigan.06G166800.01
CAAAGCCTCC ATTCCTTAAT CAAACCATAT TATAAGTGCA GGCTTTCTAC CATAAAGTCT GAACATACAC ACACATATAC
ATAACATAAC ATAACCCTTT TCTGAGGAAG AGAGAAGATA ATTCTCTAAA TCCAACAAGG GTTTGATGGA GTGCAATGTG
GAGAACAATA AGAATCTATA CCTTCATGCT CCTACTTTCA TTGAGTGGCT CAAACCATGT TCTTCTCCTT CATATCTAAA
TTCCAACACA ATATCTACTT CTTCTTCTTC TTCTTCTTCA TCTTTTTTTT CTTCTTTTTC CTTCACCCAG CATGACCTTG
TTCATGAAAC CATCCAATTC TTGCCCATTG AGGCCTCAAA AGATGAAGCC CACCATCAAA GTTTTGAGGT GAAAGAGGAA
AAGCTTGAAC AAGTCACTGT GGCTTTGCAC ATTGGTTTGC CTGACAGTGC TAAAAGGCAT CATGAGGTTG TTGATGATGA
TGATGAGAAG ATGATTTTCC ATGTCAAGGA AGAAGAAGCT TCCTCCAAGA GAAGCTTCCA TGGCTGCTCC TTTAACCAAG
AGAGAAGGTT CTGGATTCCA ACCCCAGCTC AGATCCTCGT TGGACCGATG CAGTTTGCTT GCTCCATATG CAGCAAAACC
TTCAATAGGT ATAACAACAT GCAGATGCAT ATGTGGGGTC ATGGATCAGA ATTTAGGAAA GGACCAGATT CACTGAAAGG
AACACAACCA GCAGCAATGT TAAGGTTGCC ATGTTACTGC TGCGCGCAGG GTTGCAAGAA CAACATCAAC CATCCAAGGG
CGAAGCCTTT GAAGGACTTC AGAACCCTCC AAACGCACTA CAAAAGGAAG CACGGCACAA AGCCTTTTAT GTGCAGAAAA
TGTGGGAAAA CATTTGCAGT GAAAGGTGAT TGGAGGACTC ACGAGAAGAA CTGTGGCAAG TTGTGGTACT GCACTTGTGG
CTCAGACTTC AAGCACAAAA GATCACTTAA GGACCATATT AGGTCCTTTG GAAAGGGACA CAACCCTCAT CCTCCCTTTG
AAGCTTTTGA GGATGAGAAG GAATGCATCA CTGGCTCTGA TGAAGATGAG CTCAATGCTC ATCATCATGC ATGATCTGAT
TAACATTCTA CAGCTTTTCC TCATTACCAA ACAAAAAAGT TGCAGACAAA TGTGGTGGAT GCAGCTATGG TTTTAGAACC
TTGAGTAGTG GTAATTGTAG TAGAGAGAGT TTGGTCAGTA CCCTTGTGCT CAGTAACAAA AAATTCTCAA CAATGCTGAG
ACATGAAGGC TCAGGGAAAG GTTTGCTACC GAGCACTCGC AGGGTGGTGA TGAGCTATCA GTAGAGGTTT GAACTGAATT
TGCATGCTTT TGGTTAGCTA ATAAGATGGT GCCTCAAGTG ATGAAGTAGA TGAATTTTCT TGGCATAGTC ACAGAGACAA
AGTGTTATGT CATGTTTACT TTTCTGTAAA ATATGGAGGA AATTTATCCG CTTCATTACT CAATGGTAAC CCTCATTCTA
GGACTTTATA ATACCATGTA AAGTCTTGTT TAAATATTTC TTATGAATTT GCTG

>Vigan.06G166800.01
ATGGAGTGCA ATGTGGAGAA CAATAAGAAT CTATACCTTC ATGCTCCTAC TTTCATTGAG TGGCTCAAAC CATGTTCTTC
TCCTTCATAT CTAAATTCCA ACACAATATC TACTTCTTCT TCTTCTTCTT CTTCATCTTT TTTTTCTTCT TTTTCCTTCA
CCCAGCATGA CCTTGTTCAT GAAACCATCC AATTCTTGCC CATTGAGGCC TCAAAAGATG AAGCCCACCA TCAAAGTTTT
GAGGTGAAAG AGGAAAAGCT TGAACAAGTC ACTGTGGCTT TGCACATTGG TTTGCCTGAC AGTGCTAAAA GGCATCATGA
GGTTGTTGAT GATGATGATG AGAAGATGAT TTTCCATGTC AAGGAAGAAG AAGCTTCCTC CAAGAGAAGC TTCCATGGCT
GCTCCTTTAA CCAAGAGAGA AGGTTCTGGA TTCCAACCCC AGCTCAGATC CTCGTTGGAC CGATGCAGTT TGCTTGCTCC
ATATGCAGCA AAACCTTCAA TAGGTATAAC AACATGCAGA TGCATATGTG GGGTCATGGA TCAGAATTTA GGAAAGGACC
AGATTCACTG AAAGGAACAC AACCAGCAGC AATGTTAAGG TTGCCATGTT ACTGCTGCGC GCAGGGTTGC AAGAACAACA
TCAACCATCC AAGGGCGAAG CCTTTGAAGG ACTTCAGAAC CCTCCAAACG CACTACAAAA GGAAGCACGG CACAAAGCCT
TTTATGTGCA GAAAATGTGG GAAAACATTT GCAGTGAAAG GTGATTGGAG GACTCACGAG AAGAACTGTG GCAAGTTGTG
GTACTGCACT TGTGGCTCAG ACTTCAAGCA CAAAAGATCA CTTAAGGACC ATATTAGGTC CTTTGGAAAG GGACACAACC
CTCATCCTCC CTTTGAAGCT TTTGAGGATG AGAAGGAATG CATCACTGGC TCTGATGAAG ATGAGCTCAA TGCTCATCAT
CATGCATGA

>Vigan.06G166800.01
MECNVENNKN LYLHAPTFIE WLKPCSSPSY LNSNTISTSS SSSSSSFFSS FSFTQHDLVH ETIQFLPIEA SKDEAHHQSF
EVKEEKLEQV TVALHIGLPD SAKRHHEVVD DDDEKMIFHV KEEEASSKRS FHGCSFNQER RFWIPTPAQI LVGPMQFACS
ICSKTFNRYN NMQMHMWGHG SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGTKP
FMCRKCGKTF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHNPHPPFEA FEDEKECITG SDEDELNAHH
HA*