Variant information

Chr06:29926898 - 29930122

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 [SNPs] [Indels] [SSR-associated indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
29926973TC632806.771.00UTR_5_PRIME(|70||None|Vigan.06G166800.01)Vigna nepalensis
29927384GT471798.771.00NON_SYNONYMOUS_CODING(MISSENSE|gaG/gaT|E114D|None|Vigan.06G166800.01)Vigna nepalensis
29927480CT512015.771.00SYNONYMOUS_CODING(SILENT|acC/acT|T146|None|Vigan.06G166800.01)Vigna nepalensis
29927716AG712821.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928541AG612400.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928827AG552188.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928850AG592585.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928860TG612664.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928883CA622815.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928890CT612733.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928904CA562208.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928970CT522068.770.98INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929018GA502002.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929055CT582551.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929074GT582518.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929181TC502109.771.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929278AG451770.771.00SYNONYMOUS_CODING(SILENT|ccA/ccG|P195|None|Vigan.06G166800.01)Vigna nepalensis
29929639CA752948.771.00NON_SYNONYMOUS_CODING(MISSENSE|Ctc/Atc|L316I|None|Vigan.06G166800.01)Vigna nepalensis
29929765GA552519.771.00UTR_3_PRIME(|103||None|Vigan.06G166800.01)Vigna nepalensis
29929866CT582305.771.00UTR_3_PRIME(|204||None|Vigan.06G166800.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
29926963TTAC582539.731.00UTR_5_PRIME(|79||None|Vigan.06G166800.01)Vigna nepalensis
29928470CATC542200.731.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29928862CCTATATATA542378.731.00INTRON(|||None|Vigan.06G166800.01)Vigna nepalensis
29929759GGTAAT552428.731.00UTR_3_PRIME(|98||None|Vigan.06G166800.01)Vigna nepalensis

SSR-associated indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
29927154(CTT)7(CTT)8482020.730.98CODON_INSERTION(|act/aCTTct|T38TS|None|Vigan.06G166800.01)Vigna nepalensis