GBrowse Details

Vigan.06G112600.01

Basic Information:
Name: Vigan.06G112600.01
Multiple alignment
Variant Information
Position: Chr06:21770888..21776262 (+ strand)
Length: 5375
Functional Information:
Description: Similar to Aspartate aminotransferase. [V7AL18, Phaseolus vulgaris]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: transaminase activity (GO:0008483)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Aspartate/other aminotransferase (IPR000796)
Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
Aminotransferase, class I/classII (IPR004839)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.90,2.78,33.51,20.63,37.57,37.30,33.34,6.45
Arabidopsis thaliana homolog: AT2G30970.1
Automatic updates:
Name: NM_001251401 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartate aminotransferase, mitochondrial (LOC547813), mRNA.
PubMed ID: 7766891 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:21770888..21771013 (+ strand)
Length: 126
Type: five_prime_UTR
Position: Chr06:21771014..21771181 (+ strand)
Length: 168
Type: CDS
Position: Chr06:21771549..21771634 (+ strand)
Length: 86
Type: CDS
Position: Chr06:21772869..21773075 (+ strand)
Length: 207
Type: CDS
Position: Chr06:21773219..21773324 (+ strand)
Length: 106
Type: CDS
Position: Chr06:21773447..21773551 (+ strand)
Length: 105
Type: CDS
Position: Chr06:21773640..21773812 (+ strand)
Length: 173
Type: CDS
Position: Chr06:21774556..21774715 (+ strand)
Length: 160
Type: CDS
Position: Chr06:21775313..21775408 (+ strand)
Length: 96
Type: CDS
Position: Chr06:21775643..21775737 (+ strand)
Length: 95
Type: CDS
Position: Chr06:21775835..21775907 (+ strand)
Length: 73
Type: CDS
Position: Chr06:21775908..21776262 (+ strand)
Length: 355
Type: three_prime_UTR

>Vigan.06G112600.01 class=Sequence position=Chr06:21770888..21776262 (+ strand)
TGAAAGTTAA GATCTACAAG TGGTGGGACC CACTTGCATT CAATATATAC TCACTGAAGT CACAGCTCGC AGCCAACCCT
CTGCTTTTTG TTCTGTTTCC CTGTTTCCAC GTAACTGAAC TGAGTCATGG CGATTTCGCT CAAAGGAGAA TCTCTCCGCC
GCATCATCGT TGGGACAAGG TTCATGTCAC CTTCGTGGTT TCGGAGTATC GAGCCCGCTC CCAAGGATCC GATCCTCGGA
GTAACTGAAG CTTTCCTCGC CGATCAGAGT CCAAACAAAG TCAACGTCGG AGTGGTGAGT TCTGTCTCCG TTTGCGACTT
ATGTTCTCGC ATTTTTTTTT TGTTTTTGAG AAATTGAAGA GAAATTACGT CTGTTGAAGG TGAAATTGAT TTGATCAAAT
CGGATCTGAT CAGCTAAACG GCATAGAACT GTTATATTCA TCACAGAAAG TGGAAAATGT TTATTCTTCT CTCCTTTTTA
TTGTATTGTT TGTTTCTTTC ATTGTGTTCG GAGCATTGAT TCACGCAATT TGTAGGCAGT GCAAAGAAAT TTTCAATGGA
TTATTTTGAA ATATATTTAG TGCATGTTTA GTTGAAGTGT TTCTGATATT GATGGATTCT TATTGAGTGT AATTTATTTA
TTTATTTTTT ATTTACAAAA GGGTGCGTAT CGCGACGACG ACGGAAAGGC TGTGGTTTTG GAGTGCGTTA GAGAAGCAGA
GAGGAGAATT GCAGGAAACC AATTCATGTG AGTAAAATAA TAATAATAAT AATAATAATA ATAATAATAA TAATATATAT
ATATATATAT ATATATATTT ATATATATAT ATATATATTT ATATATATAT ATATATATAT ATTTATATAT ATATATATAT
ATATATATAT TCATATATAT GCTTCCATGT GCTAATTTGT GGATGTCTCT TAAAGTTTAC CCACTAGCAG TTTTTGACTT
TTGGTTGTGT ATGGACGCCA ACGCAGTTTT GAGAATATGA TGCTTACTAT TTCTTGACGC ATCCTTTGAG AGCTACACTC
TTACCTTTTC TAATGGGGAA TTACGATTCC TTGCACTGTT TATTTAGTTC GTTTAGGTGT TTTGGGGTGA TAATGTGGGG
AATACTACTT TATTACCTGC TGCTTTTCTG GTTTCCAATC TGAAAACTTT AGAAACCTCA TCTTAACTAT ATCTTTCTAT
TCGAATGAGT ACTTCACTGT TGTCAGAATA TTCCTCAAAG TAGGAAGCTG TCAATTTTTT TTCTGAAACT AAGAAAGTAG
CATTGTTCTT GAGGATATTG TTTAGTTTCA GTTGAGGGTG GTGAATTTTT CAGTTTGTAA AGTGCCATAA AAAATTAAGT
TTAGTTGAAT TGGCTTGAGT AAATTACACT CGTCCTTCCT GTAATTTTTT TTTTGGAATT TTGTCTGATA CTCAGTTTTT
AGAAATCTAC GGAAAACTTC TGAATTGTTT TAACAGCTTG CATACATTGA CATCTCCTGT ACACTACACT AACTCCTTTA
ATTTTTGAAA AATATTAAAA CATTTTTTTA TCGCTCTTAT TGTAAATGTT AAAGAAAGCA AAGGTATTAT GTGCAATCCA
AAATATCTTA GGGGTGATAT TGTGATTTGC CCAATTGACT TTTATTACCT TACTTTCTAA ATTAATTTTG AGCATGCAAT
AAATGCATTT AACTTGAATC CTCGGGATTC ATAGAACCAC ATCTTCCATC AATTCAAACC TGCATTCCAA GACAAACTTC
TAAGGATCAC CCAGCTAAGC AATTAGTAAT ATTCTCGAGA GCCAGTTTCT ATTTTCAATA TTTTTGTAAA ACCTAGCAAT
TAAATAAAAG TCTTATCATT TAGTAGCAAA AAAACAAGGG TCTTATCGCT CTGTCTATAT AATTATATTC CAGCTTCGCG
AATCATTTTC TAATAACGGA GTCTATGCCT TTACTTTGCA CTGATACAAA TGTTTCGTCA GGGAGTATCT TCCTATTGGT
GGAAGCATAA AAATGGTTGA AGAATCGCTC AAGCTGGCAT ACGGAGACAA CTCTGAGTTC ATCAAGGATA AAAGAATAGC
TGCAGTGCAG GCTTTATCTG GGACTGGTGC ATGTCGACTT TTTGCTGCAT TTCAACAGAG ATTTCATCCT AATTCCCAAA
TCTACATACC AGTGCCTACC TGGGCCAAGT AAGTATTTAA TATAAATCTT CTTATAAACT TTAAAATATC AGTTGACTTT
ATGACCTTCA TTTTTTAATA TTTTTAGGTT GAATTTTTTG TTGGTACCAT GTCTTGCTTG GATATTTATT TCTAATATGA
GAAAATTACA GCCACCATAA CATTTGGAGA GATGCTGGAG TGTCTATGAA GACATTCCGT TACTATCATC CAGAGTCTAA
AGGATTGGAT TTTGAAGGAC TGATGAACGA CATGAAGGTA TATTTCTCTC ATTCCAAACA CTTGTAAAGT TGATTTATAG
GTCAACTTTT ACAGATGAAG CTTTCCTAGT ACTCCATACT CTTCTTACTT CTTAACTTAA TTATTTATTA CGTATACAGA
ATGCTCCAGA TGGTTCCTTC TTTCTGCTTC ATGCTTGTGC GCACAATCCT ACTGGAGTAG ATCCTTCAGA AGAACAATGG
AGAGAGATCT CTTCCCAGAT TAAGGTAACA ATTTACGGAA TAGTAATGCA TAAAATCCTT GGGTTTTTTT ATTCTGGTTG
CTGACCTTGA CATTTTTTTT CTTGTTCATT AGGCTAAGGG TCATTTCCCT TTCTTTGACA TGGCATATCA AGGTTTTGCT
AGTGGTGATC CAGAGAGAGA TGCAAAAGCC ATAAGGATTT TTCTGGAGGA CGGTCATTTA ATTGGACTAG CTCAGTCATA
TGCAAAAAAT ATGGGACTGT ACGGCCAGCG AGTTGGATGC CTGAGGTTAG TAGACTTCTT TAAACTACAA CTTAGGTGCA
GAATGCTACA TGAATAGGCT CTTCAGTGGC TTTTCTTGTG GTTCGACAGT TAGATATGTT GGACCTTGAT GATCCTCCAG
ATACATTGAA TGTTGACAAC CTGCAGCTAT ATGCCGATTG TATTATAGTG TTAAAATTAT CCGAAATTCT GCTATTCAGT
ATAAGTTTAA AAGTTAAATT GACTCTGATA CCTCAGCTCC ATAAGGTCTG CATAGTGAGG TTATAACAGT GCAGGAGCTG
GGAAACCCAA CATTCTAAAA GTAATTTTTA TAATTATCTG TAGCTTGACT TCAATTTATC TCCAGATGCA ATGGAATTCC
CGAGAGACTT ATTAGAATAT TATCATTTCT ATTATCATAT TAGCATTTAG AATATTAGTA GTAATTTTGA TGATTATTAG
GCTTAATTAA ATAGTTATTT AGTCAGCCGT GTTTACTCTC TGATTGTAAA TAATCCATAA ATACCACAAC ACGTGCGTAG
TAACACCATT TCTCTCAAAA ATTGTCTTTC AACTTGACTA AAATTAAAGC AAATAATAAA AATACGAGAA CTTGGATCAT
TTTACATGCT TTGAAGGATG AATCTTGGAC ATTTTCCATA ATATGTCATC TTGGACTTTG GGCACCTTAA CAAAATTTTA
TGTCTTGGCT ATGAAATGTG AATTAGTTCT GCAAAAACAA TGTGCTCATA GTTTAAACTT CCCTACAGTG TGCTCTGTGA
AGATGAGAAA CAAGCTGTGG CTGTAAAAAG TCAGTTACAG CTGATTGCAA GACCCATGTA CAGTAACCCA CCTGTCCATG
GAGCGCTTAT AGTTTCAACT GTTCTTGGAG ATCCAGAGTT GAAGAAGTTA TGGCTCAACG AAGTCAAGGT AAAGAGATTT
TATTTCTTAA GGGTCCCCCT GCGGGTTTGT ACCAAGTTTT CATTTGTCTT ACCTCCAGCG GGTAGTAAAG CCGCTATTCT
TGAGTTAAGG AAGGAATAAA GTAAGGTCTT GATATGAAAC TGTTGAAGTT TACTCTATAG GAGAGTTGCT GTCTTAGCAT
AACCTTCATG AGGCACTGGC CTTTGAGAAA TTTTCCTCCT GCTGTTGCAC TTCTGGGTAT GGTTTCATGC TGATTTGAAA
TCCAAGATTT GGAAAATATT TTATATTTGT CAACTTGCCA TTTTGGGTAC GTCAGAAGCT GGGTTCTGTA AATTTTTTAT
CCCCACTGTC ACGGCTAGAT GCTCTTTTGT GTCACGGCTA GATGCAGTTG TGTTCTTTAA CAAAATTTTA GGATTTCTTT
TGTGCCATTG GTTTTTGTCG TTGTCACTTG GTTCTGTTAA CACTAATCAA TGTTAATATA TTTCAAATTG TATTTTGAAA
GGACAATATC ATTACATTTT AATAAATTGT CAATACAAAT TTACGAGCAT AAGGAAGTTG TGATAATAGA TTGAAATTGG
ACTTACATAG ATATTGTGTT TGCAGGGCAT GGCAGATCGC ATCATCGGAA TGAGGACCAC ACTACGAGAG AACTTGGAAA
AGAGGAATTC TCCTTTGCCC TGGCAGCACA TAACCAATCA GGTTTGGTTG TATTTGTTTA ATGCTCAACT GCTTCAGCCA
CTTCGTCCTT TTTTTTATTG CTTATTTTAG TAGTTTAAGG TTTTCTATAA TATTTTTTTA TTTCGTTTTT AATGCAACCA
TGCGTCTTAA GACACACGGA TAGATAGCTG AGTGAGAATT TTGAATTGAA ATTTCAACAT CATATCCCAA GTACTACAAG
GTGGTTTTCT CACAGTTATT TTTTTATTTA TGTAGATTGG TATGTTCTGC TACAGTGGAT TGACACCGGA ACAGGTTGAT
CTTATGACAA GCAAGTTTCA TATTTACATG ACCCGTAATG GTCGTATCAG GTAATTAATT ATACACCCAA TTTACAGTTT
GTTTTTCACT TACTTTTAGA TTTGAGATTC ACTATTTTCT TACATTACAT ATATGTGATT ATCACAGTAT GGCTGGTCTT
AATACGGGCA ATGTGGGATA TGTTGCTGAC GCTATCCATG AGGTTACAAA ATCTTCCTAA ATAATTCAAT TTACCAATTG
AACAATTTTT GGTTTTGGGA GGAAAGAAGT CTTCTCAGAA CTAAAATAAA TATATATTCA TTTTTATGAA GCACTCCGAT
GTGTATCACC ATTTCATCAT TTTTGTTATT TAGAACAGTT TAAGTAGCAG ATCGGATGAT AGAGCTTATT TATGACGAAC
AATATATGTT CACTGAAATG TATTACTTTC TTAAGAAATG ACAGTAGCCA ATTTAGAGTG TTTGAACTTC TTTAGATAAT
TAATATGCTT ATGTTTGGCC TATGATGTGC AATGCTCTAA TCAAACTGTT GATACTTTGT TGACATATTG AGTAGTTAGA
TCTTGAAAAT ATCGG

>Vigan.06G112600.01
TGAAAGTTAA GATCTACAAG TGGTGGGACC CACTTGCATT CAATATATAC TCACTGAAGT CACAGCTCGC AGCCAACCCT
CTGCTTTTTG TTCTGTTTCC CTGTTTCCAC GTAACTGAAC TGAGTCATGG CGATTTCGCT CAAAGGAGAA TCTCTCCGCC
GCATCATCGT TGGGACAAGG TTCATGTCAC CTTCGTGGTT TCGGAGTATC GAGCCCGCTC CCAAGGATCC GATCCTCGGA
GTAACTGAAG CTTTCCTCGC CGATCAGAGT CCAAACAAAG TCAACGTCGG AGTGGGTGCG TATCGCGACG ACGACGGAAA
GGCTGTGGTT TTGGAGTGCG TTAGAGAAGC AGAGAGGAGA ATTGCAGGAA ACCAATTCAT GGAGTATCTT CCTATTGGTG
GAAGCATAAA AATGGTTGAA GAATCGCTCA AGCTGGCATA CGGAGACAAC TCTGAGTTCA TCAAGGATAA AAGAATAGCT
GCAGTGCAGG CTTTATCTGG GACTGGTGCA TGTCGACTTT TTGCTGCATT TCAACAGAGA TTTCATCCTA ATTCCCAAAT
CTACATACCA GTGCCTACCT GGGCCAACCA CCATAACATT TGGAGAGATG CTGGAGTGTC TATGAAGACA TTCCGTTACT
ATCATCCAGA GTCTAAAGGA TTGGATTTTG AAGGACTGAT GAACGACATG AAGAATGCTC CAGATGGTTC CTTCTTTCTG
CTTCATGCTT GTGCGCACAA TCCTACTGGA GTAGATCCTT CAGAAGAACA ATGGAGAGAG ATCTCTTCCC AGATTAAGGC
TAAGGGTCAT TTCCCTTTCT TTGACATGGC ATATCAAGGT TTTGCTAGTG GTGATCCAGA GAGAGATGCA AAAGCCATAA
GGATTTTTCT GGAGGACGGT CATTTAATTG GACTAGCTCA GTCATATGCA AAAAATATGG GACTGTACGG CCAGCGAGTT
GGATGCCTGA GTGTGCTCTG TGAAGATGAG AAACAAGCTG TGGCTGTAAA AAGTCAGTTA CAGCTGATTG CAAGACCCAT
GTACAGTAAC CCACCTGTCC ATGGAGCGCT TATAGTTTCA ACTGTTCTTG GAGATCCAGA GTTGAAGAAG TTATGGCTCA
ACGAAGTCAA GGGCATGGCA GATCGCATCA TCGGAATGAG GACCACACTA CGAGAGAACT TGGAAAAGAG GAATTCTCCT
TTGCCCTGGC AGCACATAAC CAATCAGATT GGTATGTTCT GCTACAGTGG ATTGACACCG GAACAGGTTG ATCTTATGAC
AAGCAAGTTT CATATTTACA TGACCCGTAA TGGTCGTATC AGTATGGCTG GTCTTAATAC GGGCAATGTG GGATATGTTG
CTGACGCTAT CCATGAGGTT ACAAAATCTT CCTAAATAAT TCAATTTACC AATTGAACAA TTTTTGGTTT TGGGAGGAAA
GAAGTCTTCT CAGAACTAAA ATAAATATAT ATTCATTTTT ATGAAGCACT CCGATGTGTA TCACCATTTC ATCATTTTTG
TTATTTAGAA CAGTTTAAGT AGCAGATCGG ATGATAGAGC TTATTTATGA CGAACAATAT ATGTTCACTG AAATGTATTA
CTTTCTTAAG AAATGACAGT AGCCAATTTA GAGTGTTTGA ACTTCTTTAG ATAATTAATA TGCTTATGTT TGGCCTATGA
TGTGCAATGC TCTAATCAAA CTGTTGATAC TTTGTTGACA TATTGAGTAG TTAGATCTTG AAAATATCGG 

>Vigan.06G112600.01
ATGGCGATTT CGCTCAAAGG AGAATCTCTC CGCCGCATCA TCGTTGGGAC AAGGTTCATG TCACCTTCGT GGTTTCGGAG
TATCGAGCCC GCTCCCAAGG ATCCGATCCT CGGAGTAACT GAAGCTTTCC TCGCCGATCA GAGTCCAAAC AAAGTCAACG
TCGGAGTGGG TGCGTATCGC GACGACGACG GAAAGGCTGT GGTTTTGGAG TGCGTTAGAG AAGCAGAGAG GAGAATTGCA
GGAAACCAAT TCATGGAGTA TCTTCCTATT GGTGGAAGCA TAAAAATGGT TGAAGAATCG CTCAAGCTGG CATACGGAGA
CAACTCTGAG TTCATCAAGG ATAAAAGAAT AGCTGCAGTG CAGGCTTTAT CTGGGACTGG TGCATGTCGA CTTTTTGCTG
CATTTCAACA GAGATTTCAT CCTAATTCCC AAATCTACAT ACCAGTGCCT ACCTGGGCCA ACCACCATAA CATTTGGAGA
GATGCTGGAG TGTCTATGAA GACATTCCGT TACTATCATC CAGAGTCTAA AGGATTGGAT TTTGAAGGAC TGATGAACGA
CATGAAGAAT GCTCCAGATG GTTCCTTCTT TCTGCTTCAT GCTTGTGCGC ACAATCCTAC TGGAGTAGAT CCTTCAGAAG
AACAATGGAG AGAGATCTCT TCCCAGATTA AGGCTAAGGG TCATTTCCCT TTCTTTGACA TGGCATATCA AGGTTTTGCT
AGTGGTGATC CAGAGAGAGA TGCAAAAGCC ATAAGGATTT TTCTGGAGGA CGGTCATTTA ATTGGACTAG CTCAGTCATA
TGCAAAAAAT ATGGGACTGT ACGGCCAGCG AGTTGGATGC CTGAGTGTGC TCTGTGAAGA TGAGAAACAA GCTGTGGCTG
TAAAAAGTCA GTTACAGCTG ATTGCAAGAC CCATGTACAG TAACCCACCT GTCCATGGAG CGCTTATAGT TTCAACTGTT
CTTGGAGATC CAGAGTTGAA GAAGTTATGG CTCAACGAAG TCAAGGGCAT GGCAGATCGC ATCATCGGAA TGAGGACCAC
ACTACGAGAG AACTTGGAAA AGAGGAATTC TCCTTTGCCC TGGCAGCACA TAACCAATCA GATTGGTATG TTCTGCTACA
GTGGATTGAC ACCGGAACAG GTTGATCTTA TGACAAGCAA GTTTCATATT TACATGACCC GTAATGGTCG TATCAGTATG
GCTGGTCTTA ATACGGGCAA TGTGGGATAT GTTGCTGACG CTATCCATGA GGTTACAAAA TCTTCCTAA

>Vigan.06G112600.01
MAISLKGESL RRIIVGTRFM SPSWFRSIEP APKDPILGVT EAFLADQSPN KVNVGVGAYR DDDGKAVVLE CVREAERRIA
GNQFMEYLPI GGSIKMVEES LKLAYGDNSE FIKDKRIAAV QALSGTGACR LFAAFQQRFH PNSQIYIPVP TWANHHNIWR
DAGVSMKTFR YYHPESKGLD FEGLMNDMKN APDGSFFLLH ACAHNPTGVD PSEEQWREIS SQIKAKGHFP FFDMAYQGFA
SGDPERDAKA IRIFLEDGHL IGLAQSYAKN MGLYGQRVGC LSVLCEDEKQ AVAVKSQLQL IARPMYSNPP VHGALIVSTV
LGDPELKKLW LNEVKGMADR IIGMRTTLRE NLEKRNSPLP WQHITNQIGM FCYSGLTPEQ VDLMTSKFHI YMTRNGRISM
AGLNTGNVGY VADAIHEVTK SS*