GBrowse Details

Vigan.06G045900.01

Basic Information:
Name: Vigan.06G045900.01
Multiple alignment
Variant Information
Position: Chr06:5934785..5939656 (+ strand)
Length: 4872
Functional Information:
Description: Similar to Uncharacterized protein. [K7KWZ7, Glycine max]
GO: Molecular Function: catalytic activity (GO:0003824)
InterPro: Protein phosphatase 2C (PP2C)-like domain (IPR001932)
Protein phosphatase 2C (IPR015655)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1968.20,130.75,40.27,34.25,30.10,56.47,16.88,68.93
Automatic updates:
Name: NM_001255873 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative protein phosphatase 2C (LOC100787942), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:5934785..5935219 (+ strand)
Length: 435
Type: five_prime_UTR
Position: Chr06:5935220..5935252 (+ strand)
Length: 33
Type: CDS
Position: Chr06:5937042..5937287 (+ strand)
Length: 246
Type: CDS
Position: Chr06:5937760..5938036 (+ strand)
Length: 277
Type: CDS
Position: Chr06:5939055..5939209 (+ strand)
Length: 155
Type: CDS
Position: Chr06:5939339..5939476 (+ strand)
Length: 138
Type: CDS
Position: Chr06:5939477..5939656 (+ strand)
Length: 180
Type: three_prime_UTR

>Vigan.06G045900.01 class=Sequence position=Chr06:5934785..5939656 (+ strand)
ATTGCTTACT TTTTCTGAAG ACGATAACTT GATAAGACCG TACTTTATTA TGATTAACTC AAAAGCAGAG AAAGCGAAGC
CCTACGGAGA AAACTGATCA ACGAGACGGC GCCACGTGTA GGCGCGAACG CGTCATTGTA ATTGCGACGT ACGCGGCATG
GTATTGGGAA GTAACAGGAA GTCGTGTCAA CGCGACATCA TCAACTTTCA CAAAACAACA CAACACAGCA AATCTCACTC
TCCTTTTTTC CTTTTTCTTC CTCAAAATCC CTTCTTCCTT CGCTGCCTCT TCACCTCTTC GCCTCTTCGC TTCTCTGTCT
TCTTCTTACT CTCTCCCTCA TTGCGTCAAC TAAAAAATAT ACATAAAAAA CACCACACCC TTCTCTACGT GGCCACTCTC
ACTTTCCTTT TAAATCTTTA TTTAAGCCCT TCACTATGAC CGGCAAAGAA ATCCTTCACA AGATGAAGGT ACCCTTTTGT
TTTTTCACCT TTCGTTGCTC TAGTTTATTT AAGCATCTCT TTTCTTTTTT TTTTTCATTT TGCTCTCTTT TGTTTCGTTG
CAATGACTAA CAATTTGGTT TCTGTTCATT TGTCGGTGTT GATCTTTGTC TATCAGTTCA GTGGACTGCT TTTCATAAAC
CCTGTAATTT TATTCCATGC CTTTCGTGGT AGGGAATGTA GTTTTACTGT GGCGCTTTCT TCATTAACTC CAACAGTGCC
TTCTTTTTAT TGGAGATTTA TCTGAAGTAG AGATAATACC GATTTAAAAA TTTGAAATAT ACACTTCTAT GAACCCAATT
AGGCTTAAAT TCCCTAATAT ATATCATATC AGAGTCTATC CTTTATAATT TTGTTAGTAA TTTTCTATCA TTTAACAATT
TAAGTCCTAA AGTTCTAATT GTTTTCGAGT TGAATTATAT ACATGAGCTA TCTTACCCTT ATGTGATAAT TCATTGAGAG
TTGAATATAG GGAATGTGCT ATGTATACCT TAGATTTTAA GGTTAAGACC ATCTTAAAGG AAAAATGACT GTTACTGGGT
CATCGTTGAT TGGTGATATA ACCTGTGTAA TTGGTGATCG TAAGTTTGTT CTTATGAACT TTTAAGTATC CTTTAGCAAA
GAGTCAAATA ATGAGATTCT ATCTGGATAC AAAGATAGAA GAACTTTTGA GAATTTTTCT ATCAGAAAAA AGCTCTATAT
TCTCAACAGA GAAGCTCTAG CAGATATTCT TCTACCTAGG AACCTTAATT TATCAACATC TACGTGAAAA TTTATGCCAC
CGAATTAACT TGATGGCCTA CAATACCTCT CGGTGGCTCC ATTTATAATC TTTGTAATTG CAGGCCAGGT TTATATGGCA
TAACAATTCC AAGGTTTTAG AGTATTGGTC AATTTGCTGC AACATATATT GTGCTATAGT GTGTGAACGA TCATATTTTA
GGTCTTAAGT TGGTTGGTTA ATGAAGATGG TTGGGAGGTT ACTTGTCACA GAGGTTAGAA AAGATCATCA ACTTTTGTGT
GGTGATCTGT AACTTCAGAA TCAAATGACT GTTGGAGGGT GAATCACGGG TCCAATACCC CAGTTTGTGT TTTTGACCTG
GAACACACGA GGAATGGGAA AAGTCAGTTG TAGCCCTTAT GATGGGACGG TTGCCCTTAA AATCATCTCT GCCAGTTGTT
AAATCCAGCT TCCTAATATG AATTAAGCAG ATTTATGCTA TGCTGTGTTT AAGACTAACA TGGTCTTAAG AATGCAGTAC
AGTCTTGTTG TTTAGTTCTA GTTAGGTGTG TTTTTATAGG CAAATACAAT TCAGGGAAAA TTATTATATG GTTTTTGGGT
AAATTGAGGT TGTTTAAAGT CAAAATTTAA AATGACAATA TAATTAATGA CTTCTTGCGC TTTACAAGTC TGTTATTGTT
TGCAAAGATA ATATTTCCTA TAGTGTACAC AGTTAGTTAT TTGAGAAGAT AAAAGAATGT GTTTAAGACA CATCATCCTG
AATTTAGTTT TGAAAAAGCT TTGGTAAATG ATGCCCTTAG CTATTAATTT TTGAAATCCA GCTGAGTAGT GTCTTAGAAC
TTAACAATCA CACAAAGCTT CAAGAAATAC AACTTTGTTC GATAAATTGC TTATGTTTGT CTTTCTTGGA GTAAGATGAG
TTCAAAAGTT CACTGACCTG ATTCTCATTT GATCAATAAC TAAATTTCTT ATTTTTTCGG TTGTGAATGT CTTGTAACCT
GATTATGTTA CTTACAGGAA AAAGTTTTGG GGCCATCTGA TTCTGATTCA GGTAAAGGAA AGAGCAAGAT GAAGAAGCAC
ATTACTCATG GCTTTCACTT GGTAAAGGGA AGATCTGGTC ATGCCATGGA AGACTATGTT GTTGCTCAGT TTAAGCAAGT
TGATAACAAT GAATTGGGTT TATTTGCTAT ATTCGATGGC CACTCAGGTC AAAGTGTGCC TGATTACTTG AGAACTCATT
TGTTTGATAA CATCTTGAAA GAGGTAATGT GGGTTCATAA TCTTTAGTTC TTGTTACTTG ATCATTGAGC TGCTTGGTGT
GAAACATAAT CTGTTGTATA ATTACTTTAA ATTTCTAGTT ACTTATCAAC ATGAAAAATG TTAGTATTAA AAATTAAATG
GTTAATATGT TTTTCATTAT GAAAAATTGT TTAGTCTCTT TACTTTATGA GAGTAATGTA AAACATTCTT GCTAACAAAC
TGCATGTGAA GGTTATATTT TAGTTTACTA TGGAACTCAG GAAACACTCC ACATGTCCTT TGTTGAAAAG GATGTTTTAC
ACTTTCATAA AATATAGGGA CTAAATACTT TATAATTTAT TTTAAGGATG AAATAGAATT TTTTATAATA GTATGGGACA
GAAAACATAT TTAACCCAAA ATAAAACTCT TTAAATAAAA CTCTTTAAAT ACAATGCATG TCTATGACTC AGGTTTTCCC
CATTTCTTCA TGTAGCCTAA CTTCTGGACA GAACCTGCTG ATGCTGTGAA GAGGGCATAT AGTATAACTG ATTCTACTAT
TTTAGACAAA TCAGGTGAAC TGGGTCGAGG GGGTTCAACT GCAGTTACTG CAATATTGAT CAACTGTCAG AAGTTAGTAG
TGGCCAATAT TGGAGATTCC AGGGCTGTCT TGTGCCAGAA TGGCCAGGCC AAACAACTAT CAGTGGATCA TGAGCCAAGT
GTAGAAAGTG AGGATATAAA AAACAGAGGT GGTTTTGTGT CAAACTTCCC AGGTACCAAT CACCTTTTAA AATGTTGTAT
GGTTTTTTAC CTTCATCTTA ATTTAGTGTT TCACAATATC ATCATCCCCT TATCCGAGGT TTTAGTTTTA CTTGTTAGCA
TGTGGTTTTT AATGATTTTT CTTATGTCCT TGTTATTAAG GTTTGATGTT TACATATTCT CAAAATATAA AATTGTTGGC
TTTTAGTTTT TTTGTTTCTA ACAGAAGTCT TTCAGTCCTT AGAAAATCAA TTTTGTCCTT TATGCTTTTC TTTTACTTAT
AAAGATATGG TTATCTTTTT TCAGAAACAA AAATGTCATG TGTTATTAGT TTCCTTTTAA GTGAGTATCA CTTAGACATT
TTTATTAACA ATGATTTCCA TAAATAAGGA ATTCAAAGGA AGCAATTGTT TTTGACAGAA TAATACTGAA CATTCCTATA
CTTGCATGCG ATACAAACAT CTGACTTCTA TATTATTACA GTGCTATCTT TATCATGACA TATTTTGTAA ATACACATTT
TAAAAGAAGT TGTTGGTAAT AGTATGTAAA GAGTGTCTTT GAAATCCAAG AATGAGTTGT CATAGAAATA AGAAAGTTGA
GTAATATATA AAGAAAAAAA GAAAAAGAAA GACTTGTTGA AAATACAGTC TTTGCATTGA CATGATACTC ACAGACATAG
TCTTATGTCT TAAAGGTTTT GAATTGAAGA TACTCATGAT CTCTGACACA AAGAATGAGT TAAAAAGTTG AGTAACATAA
CAAAAAAAGG ACCAGACACA TTTTTAAGGT TTTTGATTGA AGGTATCATG ATATATGATC CACAAAAAAT GAGTTAAAAG
TCGATAGAAA TAAGAAAGTT GAGTAACTTA TAACGATAAA AAGATTCTTA AGGTTTTGGA TTAAATGTAG TATATTGATC
TCTTATATGA TTGATTCATG TCTCAGTTTT TCTGGTCTAT TTCCCTAGGA AAATCCCTAC ATTCATTTGC TAATTCAGTG
CTAAGGATAC TGGTTTTCTG ATTGAATCAG GGGACGTTCC ACGAGTTGAT GGTCAGTTGG CAGTGTCAAG GGCATTCGGT
GACAAAAGCC TGAAGGTACA CTTGAGCTCA GAACCACATG TGATTGTGGA GTTGATAGGC GATGATGCAG AGTTTGTTAT
CTTAGCCAGT GATGGGTTAT GGAAGGTAAT ATTCAATAAA CTAAACAAGA TAAGATTCTC AACAACTAAT GAATGTGTTT
TTTTGGTTTT CTACACTCCA AGTTCCTTGC ATATTCTGCA CTGATCATCA TAATATTCAT TGAAATTATT GAAGGTGATG
ACAAATCAAG AAGCAGTTGA TGCAATCAGA GATGTTAAGG ATGCTCGCTC TGCAGCAAAG ATCCTTACTG AAGAAGCACG
TAACAGGAAA AGCTCAGATG ATATCTCTTG TGTTGTTGTG AAATTTCAGT GATCAAATGA CTCAATTAGT AGAACTTGAA
AGTGTATATT TGGATAAATG ATGATACACC CTTGTGGTGT TATTGCATGT TATAGCATTC CGTGTGCAAT ATTTTCTGTT
CATGTTTGAT GAAATAATAT GAAAAGGATG TAGATTTGGA TTGTATTAAT AAAAATAATT TTTATGATTG CA

>Vigan.06G045900.01
ATTGCTTACT TTTTCTGAAG ACGATAACTT GATAAGACCG TACTTTATTA TGATTAACTC AAAAGCAGAG AAAGCGAAGC
CCTACGGAGA AAACTGATCA ACGAGACGGC GCCACGTGTA GGCGCGAACG CGTCATTGTA ATTGCGACGT ACGCGGCATG
GTATTGGGAA GTAACAGGAA GTCGTGTCAA CGCGACATCA TCAACTTTCA CAAAACAACA CAACACAGCA AATCTCACTC
TCCTTTTTTC CTTTTTCTTC CTCAAAATCC CTTCTTCCTT CGCTGCCTCT TCACCTCTTC GCCTCTTCGC TTCTCTGTCT
TCTTCTTACT CTCTCCCTCA TTGCGTCAAC TAAAAAATAT ACATAAAAAA CACCACACCC TTCTCTACGT GGCCACTCTC
ACTTTCCTTT TAAATCTTTA TTTAAGCCCT TCACTATGAC CGGCAAAGAA ATCCTTCACA AGATGAAGGA AAAAGTTTTG
GGGCCATCTG ATTCTGATTC AGGTAAAGGA AAGAGCAAGA TGAAGAAGCA CATTACTCAT GGCTTTCACT TGGTAAAGGG
AAGATCTGGT CATGCCATGG AAGACTATGT TGTTGCTCAG TTTAAGCAAG TTGATAACAA TGAATTGGGT TTATTTGCTA
TATTCGATGG CCACTCAGGT CAAAGTGTGC CTGATTACTT GAGAACTCAT TTGTTTGATA ACATCTTGAA AGAGCCTAAC
TTCTGGACAG AACCTGCTGA TGCTGTGAAG AGGGCATATA GTATAACTGA TTCTACTATT TTAGACAAAT CAGGTGAACT
GGGTCGAGGG GGTTCAACTG CAGTTACTGC AATATTGATC AACTGTCAGA AGTTAGTAGT GGCCAATATT GGAGATTCCA
GGGCTGTCTT GTGCCAGAAT GGCCAGGCCA AACAACTATC AGTGGATCAT GAGCCAAGTG TAGAAAGTGA GGATATAAAA
AACAGAGGTG GTTTTGTGTC AAACTTCCCA GGGGACGTTC CACGAGTTGA TGGTCAGTTG GCAGTGTCAA GGGCATTCGG
TGACAAAAGC CTGAAGGTAC ACTTGAGCTC AGAACCACAT GTGATTGTGG AGTTGATAGG CGATGATGCA GAGTTTGTTA
TCTTAGCCAG TGATGGGTTA TGGAAGGTGA TGACAAATCA AGAAGCAGTT GATGCAATCA GAGATGTTAA GGATGCTCGC
TCTGCAGCAA AGATCCTTAC TGAAGAAGCA CGTAACAGGA AAAGCTCAGA TGATATCTCT TGTGTTGTTG TGAAATTTCA
GTGATCAAAT GACTCAATTA GTAGAACTTG AAAGTGTATA TTTGGATAAA TGATGATACA CCCTTGTGGT GTTATTGCAT
GTTATAGCAT TCCGTGTGCA ATATTTTCTG TTCATGTTTG ATGAAATAAT ATGAAAAGGA TGTAGATTTG GATTGTATTA
ATAAAAATAA TTTTTATGAT TGCA

>Vigan.06G045900.01
ATGACCGGCA AAGAAATCCT TCACAAGATG AAGGAAAAAG TTTTGGGGCC ATCTGATTCT GATTCAGGTA AAGGAAAGAG
CAAGATGAAG AAGCACATTA CTCATGGCTT TCACTTGGTA AAGGGAAGAT CTGGTCATGC CATGGAAGAC TATGTTGTTG
CTCAGTTTAA GCAAGTTGAT AACAATGAAT TGGGTTTATT TGCTATATTC GATGGCCACT CAGGTCAAAG TGTGCCTGAT
TACTTGAGAA CTCATTTGTT TGATAACATC TTGAAAGAGC CTAACTTCTG GACAGAACCT GCTGATGCTG TGAAGAGGGC
ATATAGTATA ACTGATTCTA CTATTTTAGA CAAATCAGGT GAACTGGGTC GAGGGGGTTC AACTGCAGTT ACTGCAATAT
TGATCAACTG TCAGAAGTTA GTAGTGGCCA ATATTGGAGA TTCCAGGGCT GTCTTGTGCC AGAATGGCCA GGCCAAACAA
CTATCAGTGG ATCATGAGCC AAGTGTAGAA AGTGAGGATA TAAAAAACAG AGGTGGTTTT GTGTCAAACT TCCCAGGGGA
CGTTCCACGA GTTGATGGTC AGTTGGCAGT GTCAAGGGCA TTCGGTGACA AAAGCCTGAA GGTACACTTG AGCTCAGAAC
CACATGTGAT TGTGGAGTTG ATAGGCGATG ATGCAGAGTT TGTTATCTTA GCCAGTGATG GGTTATGGAA GGTGATGACA
AATCAAGAAG CAGTTGATGC AATCAGAGAT GTTAAGGATG CTCGCTCTGC AGCAAAGATC CTTACTGAAG AAGCACGTAA
CAGGAAAAGC TCAGATGATA TCTCTTGTGT TGTTGTGAAA TTTCAGTGA

>Vigan.06G045900.01
MTGKEILHKM KEKVLGPSDS DSGKGKSKMK KHITHGFHLV KGRSGHAMED YVVAQFKQVD NNELGLFAIF DGHSGQSVPD
YLRTHLFDNI LKEPNFWTEP ADAVKRAYSI TDSTILDKSG ELGRGGSTAV TAILINCQKL VVANIGDSRA VLCQNGQAKQ
LSVDHEPSVE SEDIKNRGGF VSNFPGDVPR VDGQLAVSRA FGDKSLKVHL SSEPHVIVEL IGDDAEFVIL ASDGLWKVMT
NQEAVDAIRD VKDARSAAKI LTEEARNRKS SDDISCVVVK FQ*