Variant information

Chr06:5934785 - 5939656

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5934792AT482128.771.00UTR_5_PRIME(|428||None|Vigan.06G045900.01)Vigna nepalensis
5934799CT482123.771.00START_GAINED(|||None|Vigan.06G045900.01), UTR_5_PRIME(|421||None|Vigan.06G045900.01)Vigna nepalensis
5935026CT492033.771.00UTR_5_PRIME(|194||None|Vigan.06G045900.01)Vigna nepalensis
5935166TG381518.771.00START_GAINED(|||None|Vigan.06G045900.01), UTR_5_PRIME(|54||None|Vigan.06G045900.01)Vigna nepalensis
5935217AG391589.771.00UTR_5_PRIME(|3||None|Vigan.06G045900.01)Vigna nepalensis
5935269TA391701.771.00INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5935270CA381701.771.00INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5935726TA642687.771.00INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5936129CG682606.771.00DOWNSTREAM(|4662||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5936856TC843322.771.00DOWNSTREAM(|3935||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5937239TC632418.771.00DOWNSTREAM(|3552||None|Vigan.06G046000.01), SYNONYMOUS_CODING(SILENT|agT/agC|S77|None|Vigan.06G045900.01)Vigna nepalensis
5937256GA572221.771.00DOWNSTREAM(|3535||None|Vigan.06G046000.01), NON_SYNONYMOUS_CODING(MISSENSE|aGa/aAa|R83K|None|Vigan.06G045900.01)Vigna nepalensis
5937338TG602445.771.00DOWNSTREAM(|3453||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5937416AT492043.771.00DOWNSTREAM(|3375||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5938385TC622551.771.00DOWNSTREAM(|2406||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5938730GA823061.771.00DOWNSTREAM(|2061||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5939599TC662656.771.00DOWNSTREAM(|1192||None|Vigan.06G046000.01), UTR_3_PRIME(|123||None|Vigan.06G045900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
5934833TTA461683.731.00UTR_5_PRIME(|386||None|Vigan.06G045900.01)Vigna nepalensis
5934998AAACAACACAAC492342.731.00UTR_5_PRIME(|221||None|Vigan.06G045900.01)Vigna nepalensis
5935308CCTT27933.730.96INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5937658TTG371206.731.00DOWNSTREAM(|3132||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5937682AAAATAAAACTCTTTA301294.731.00DOWNSTREAM(|3108||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5938043ATCACCTTTA391693.731.00DOWNSTREAM(|2747||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01), SPLICE_SITE_REGION(|||None|Vigan.06G045900.01)Vigna nepalensis
5938319CTC521617.731.00DOWNSTREAM(|2471||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis
5938657CTTGC592608.731.00DOWNSTREAM(|2133||None|Vigan.06G046000.01), INTRON(|||None|Vigan.06G045900.01)Vigna nepalensis