GBrowse Details

Vigan.06G035900.01

Basic Information:
Name: Vigan.06G035900.01
Multiple alignment
Variant Information
Position: Chr06:4147299..4153893 (- strand)
Length: 6595
Functional Information:
Description: Similar to Proteasome subunit alpha type. [V7AHS3, Phaseolus vulgaris]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome alpha-subunit, N-terminal domain (IPR000426)
Proteasome, subunit alpha/beta (IPR001353)
Proteasome A-type subunit (IPR023332)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:190.65,172.08,97.08,64.80,129.90,164.75,100.48,78.78
Arabidopsis thaliana homolog: AT5G35590.1
Automatic updates:
Name: NM_001251322 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome subunit alpha type-6 (PAA1), mRNA.
PubMed ID: 7681138 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:4147299..4147583 (- strand)
Length: 285
Type: three_prime_UTR
Position: Chr06:4147584..4147676 (- strand)
Length: 93
Type: CDS
Position: Chr06:4148272..4148331 (- strand)
Length: 60
Type: CDS
Position: Chr06:4149089..4149184 (- strand)
Length: 96
Type: CDS
Position: Chr06:4150097..4150179 (- strand)
Length: 83
Type: CDS
Position: Chr06:4150347..4150405 (- strand)
Length: 59
Type: CDS
Position: Chr06:4152010..4152106 (- strand)
Length: 97
Type: CDS
Position: Chr06:4152837..4152918 (- strand)
Length: 82
Type: CDS
Position: Chr06:4152995..4153089 (- strand)
Length: 95
Type: CDS
Position: Chr06:4153626..4153701 (- strand)
Length: 76
Type: CDS
Position: Chr06:4153702..4153893 (- strand)
Length: 192
Type: five_prime_UTR

>Vigan.06G035900.01 class=Sequence position=Chr06:4147299..4153893 (- strand)
CAAAATGAAA CCCCCTTGTT TTCTTGAGTA GGAAGTTGAG ATCGACACTT TAATACCGGA AGAGCACCGT CTCCACTCTC
GACTTCTTCG TTGCACTTTC TCGAAAACCA ATACACCACT CTCGTCGCCG CCGTCATCGT CGTCGACCAT CGCAAGCGCT
GTCGCACTCC GCTGTCATCC GTTAGGGTTA AGATGAGTCG AGGAAGTGGA GGCGGATACG ATCGTCACAT CACTATTTTC
TCTCCCGAGG GACGCCTCTT TCAAGTTGGT ACGTTACTCG AATCTCTTCT TTTCCTGTGA CCTCTAGCAA CAACAGCGAC
GTTTTGATAA GTGAAATACG GTTTAGATCT TTCACTTCAA TTTCTGCAAT TCTGTGCGGA AAACAATTAT TTTTGTGTAC
TTTAGAAGAA ATCATTGCTG TAATTTTTGT GATTTCAGTT TAGATTAGTG GTAGTGGAGT AGTGTGCCAG GATAGTAATG
TGGAAATCGG AAGTTAAGAA ATGCGCTTGA CTCTGAATTG ATTGATTGTG TGCTCACTTA CGAATGGAAT ATTTTGTTCT
CTTTTCATAA TGAGTATCTC TTTGTCCTTT TTTGTGTTCT TTTCTTTTTC AATTTTTGGA ATAATGTTAT GTTCAGCCTT
GTTTTAGCCC TATCGGCCTT AAATCTGTAA CTCTCTCTAA TTAACGAAAT GGCCTGGATT GGGGTAGGTT TATGATTACA
CTTGTTTGAC TTGTTTGGAA TGAGTTGACT AGTAAGTTAG GCTATAGTGT TGAGTGGTGG AAATTTTTAT GCATCATGAA
ACAGAGTATG CTTTCAAGGC TGTTAAGGCT GCTGGAATCA CCTCAATCGG TGTCCGAGGA AAGGATTCCA TTTGTGTTGT
TACTCAGAAG AAGGTTCCGG TGAGTACTGA TAGTTGGTTC TTTGATCTTT GTTTTGTTTA TGTGTGCTGG ATGCTTAAGT
TAGGATAACA TGCAGGATAA GCTTTTGGAC CAGACAAGTG TTACACACCT CTTTCCCATC ACAAAGTACC TTGGTTTGTT
GGCGACTGGC ATGACAGGTA TATTTTTCAT TCCATCTCTG ATTCTTTTGT TGTAGGCATT TGTGAATTTA TTTTGCATAT
CTTTTAGTTA AAGTATATGT ATTTTTATCT GTACAAGTTA AATTGGGTAG AGTTTCACAG ATGTTGTATC TCGATTAAAA
CATAAATTAC AAGTTCAAAA ATATGATATC AACCCAAGCT ACTGGTTAGT GAGAGGATAA ATAAGAAAGA CATGGTGATT
ATTAGATAAT GCTTATAATT TTTCTAGATT ATGGTATATA GGAAATTAGA TATTCGTTTT GGTGCCAAAC CTTTGTGTTT
CAGATGTACA TTTTGTTTCA TGTGTAATAT TGATCAATAA ATCTATGAAA TCTTTCATAA AATATAAATA ATAGTTTATG
ATGAGAAATA ACCTTAATGT TACTGTCGAA GTTATGTCTA TGGATAACAT AAACTATGAC CAGATTCACA TTCTGATGGT
GATATAACTA TAATTAATAA TTTATGAAGA GAAAAGACTT TAGTTATACT GTCCAGGTTT TGCCTACTGA TAACATAACA
TACTGGATTC GCAATAGAGA CAATAATATT ATTGTTTTTT CTGTAAATTA AACTTTGATG TATGAGCACA TGTTCAAATT
TCAGTCAGAG TAAATAGAGC TTTTTAGTTT TTCAGATCTG TTTAGAACTG AAATTTCCTT ACATTATAAA TTCATTTTTT
GATTTATTTT GGAATACATC TTTCCAGCTG ATGCTAGGAC ACTGGTCCAA CAAGCAAGAA ATGAAGCAGC TGAGTTTCGC
TTTACATATG GATATGAGAT GCCTGTAGAT GTGTTAGCTA GATGGTAAGC AGTTCAGTTT TTGAAACATA TTTTTCCACC
ATAATATTAC AAGCTGTTGA TTATTCTTTT TCATATCTGC TTGCAAATTA TCGTTTTTTA ATGAAGAATT TCATCTGCAC
TTCATTTAAG GTAACTGGAT AAGTACAAGA ATAGGCATTG ATCCATATTG TTGTAACGTT CTTCTAATAA TTGGATTGCG
AGTGGGAAGT CCATTGGTCG TCCTACTTTG TTGACTAGGT AGATTGCAAG CTGACGAATC AGTAAACAAC CTAATGTACT
AAAACAGTGA AGAAACTGCT CCTTTCAAAC AGGTGCTGCT GTTAACAGAT CCCACAGTAG GAACCGTTAG GGCCATGGAT
TTATGTGCCA TTTTCGGACA TTAATTTCTT TATTAATATT ATCATCTGTT TCTGAAAAGG ATGCTGAATG CTAATGAAGA
ATGGAAGTGT TAGACCTGAT ATTTAGTTTT ATAAGGGTTG AATTTATTTG GTGATTGGTG AGATTGCTCA TTGATGTCTT
TCCTTTTTCC TAGTTGGTTT GATAAAGAAC TTACTGCAAA TTTTATAGTA AAGTTGGTGA TTAACTTTCT CATGCATTTC
CATCTGCCTT GTTTTCTATC TGTGGTTTTT TGTCATCTTC ACCTAGTTTT TCTAATTTAA TAAGTAATAA ACTAGTTGTG
TCCAAATTTT CATCCAGTCT CTGGAAATAG CATTGATTAT GATTAAACAT TTGGGATATA AAGGTATTTG GCAAAGGATA
GTAAACCATT TCTTAGACAC TTTTAGAGTT TGAGCTTTCT ATGGCTGCAT TAATGTACTT ATAAAAATTC CTTAAATAAA
ATGCTATCAG CTTTTGCAGC AGTGCCACCG TGGTAGTGTT GTTTGCTTTA GCATTACTTC TAAATAACTT GTGCTTTTGC
TTTCAATTTT ATGGTTCGAT GTGGTTGTAG GGTATTATCT CTGGGTAATC TGGTCTGTCA GGATTCATTT CTGTGATCTC
GAAAGGATTA TCAAACAGAT TTCTAAAGTT AAATATGTCT GCTAGCTTTA ACATTGAAGA TTGTGATGGT ATTTTTGTCA
TTTTTATGAT TTTCTGTATT GAAGTATATA GTAACTGAAT ATGGGTTCGA TGAGGAAATC TTTTTGACAT GTTTGATGCA
TGCAGAATAA ATTTAATTGC AGTGGTAGTT GTGTCTATGC ACATTGTGGA AGGTTTTCGG CTGCTGCCTT GTTAGTGTAG
TATTCAGTAT GATACGGTTT TCTTAAGGTG TTTTTATGGT TTACAGCTTT GCTTCTTTCA TTATCCATGT AAAAAGAATC
CTTGTTTTCT TTTGTACATT TTATCAATAC CAATACATAA ATAACCTTTT CTGCCTGTCT TCTCTCTCTC TCTCTCTCTC
TCTCTCTCTC TCTCTCTTAA CTTGAATATG CCTCAACATT ATTTTGAAAG AGTCTTTTTA TAATCATTAA TCTCTTAAAT
TGAATCTGAC TGTAGTTTTG AGTTTTATCA AAGGCTACAT TATTTTAGCT ACTGTATATT AGGATTCTAC AACTTGCAAT
ATTTATAACA TCTTTTGTGT CTGCCTTTGT TATCTTTTAT ACTTACAGGA TTGCAGACAA ATCACAAGTC TATACCCAAC
ATGCATATAT GAGACCACTT GGAGTAGGTA GGTTTTCTTC TTGGCTTTTT CCCTGTTGAA CAAATGTTTA ACTTTTTTGA
AAATTCGCAT AAATTGTGTT TGTATCATAA AAGATATTTA ATAATTCAAT TACCTACGAT TTTTATTGAC ACCATTTCTT
CTTTCTGTGA TTTCAAATCT GTTGTGCCAT GAAGTTGCTA TGGTTTTGGG TATAGATGAT GAATACGGAC CACAGCTTTA
CAAATGTGAT CCTGCTGGTC ATTACTTTGG TCACAAGGTA CGTGGAAGAT CTTTCTGACT TTGATTGACA GTAGATATTT
TAGTGGTTTG TTGCTATTTA ATCAGAAGAT GAAAAACATC TTGATAATAA ACTCAATTTT ATAAAAGTTT CTAAGTTATA
ACTTTCATCG ATTTAAATGT CTCATGCATT GAAAATAATT ATCTCACATC ATTAAATAGT TAAATGATAG AGGGGTTTGG
GGATGACTAC ACCAAGATTG ACTGGTGCCT TTATTTCATG AAAGTTGTTT ATTCCATTTC TTCTATTACA AGTGTAAGAT
TGCATTGTAT GAGCTTACTG AGATGATTTA TTGATTGAAC TACTGAACCA AATGAAAAGT TATCATGGCA GTATAACTAC
AGTTATGATT GACCAAGAAA AGGAGGATTA TAACTAGTCA ATAATGCCGG TAAGGGAGTA TGTAAATTAG TGATTTTGTA
AAAATGATTT AGCAGCCTTG AATTCATCAC AAGTTGTTCA TATTTTGAAC TTTATGCAGC AATAATCTTT ATAATGTACT
AGTGTTATAA AATGTGTAAC CATATATGTA AAAGATCTTG AACCTTCAAC TGCCCCTAAA TTGCCCCGTC CTTATTTGGT
CTAAATTTTA CTTCCTAGTA GAACTAGTAA CATTGAGAAA CTTATTTGGT GCTTAGTGAT TTTGTTATTT TAAAAAAAAT
CTGTATTGCA ATTTTTGTTT TGTTAGATCT GCTGACTACA TTTCCTTCTG AATTTTTCAT TGCTTGTCCA TATATATGTA
AGATTATGAT GCACATTGGT TTCGATCCTT GTAAACTTTT CAAAGCAAGT GATGGTGTTT CTGTTTTTTC ATTAGTTCAT
GCTTTTGTTA TCTGTTCGTA TTTGTATACA GAAATTCAAG TGTCTAAGAA TCTATTATGA TGTACTCAGG CCACAAGTGC
TGGATTGAAG GACCAAGAGG CAATTAATTT CTTGGAAAAG AAGATGAAGA ATGACCCTTC ATTTACTTAT GAGGAGACGG
TGCAGGTAGT GCTCTTTCAA TTTTTTTTCC TCCATTTCTA TCTGTTTAGT TTGAGAAATA AACAATCTTT ACACTGGTTT
TTTGGTTGAT GTGGAAAATG AAGATGCCAT GTTTTGTCTC CAAGAATGTC TGTTATCAAG GATATATATT TCATCATGTC
AGATTTCCTC CATTCTTTTT TAGATAAACA GTGAATTTTG TTGGTTTTTT CTTCTGGCAA CATAATTATA TTGTATAGTT
GTGCTATTAT GTTCTATAAC TATTAGTCCG CATGAAACTT ACTGGACAAA ATGTTGAATT CACTTGTGTT TGCTAAAGAT
TATCTGTTCT AACAGAAGGT GAAAAGTCTG AAACATGAGT GAGTAGATTT AAATAATCTC AGTTTTGGCT TTGCTTAGAA
TAGGAATGAT GGTTGTTATC TTCTGTAAGT GTTAATGCCA GACAGAGGAC TTATCCATGG GAATCAGATA ATGTTACAAG
AACTAAACTT TTGGTTCCTT ATTAAAACTA TATCTTATTA CGTTAGTTAT GACATTATAA TATTTGTTGT CCCCGCCTGT
ATCTTAATTT AATTAGTTTC TTATCTGTAT TTATCTCATA AATGGTTGTT AGTTTTTGTT TGCAAGACTT TTACCAATAT
TGCAACTAAA GGCATTTGAA ATTGAATTTT TTAATATCAA TTTTGGTAAT AGTTATTAAA TTTCGTTTCT ATGTTCTGAC
TTGAAGATTT CCCTGCCTGT TCTTTTTTTT TCTTTTTATC AGACTGCCAT TTCTGCTCTC CAATCAGTTC TTCAGGAGGA
TTTTAAGGCC ACTGAGATTG AGGTAGAATT TTATTCCCCT TCCTAATTGA AATTTGCAAA CTAAGCCATA TCTTTATAAA
GTTATTGCCG GATTTCATTC GTGTGTAATC CCTAGCAAAG GACCAAGACT GGTCTTTAAT ATTAAAAAGA TTTTTAACAA
CTTTCTTGTT CCTTCTTGTT AAATGTAAGC CATATATATT TATCGTACAC AGCCTGTTGC GTTTGTTTGA ACAGGCAATT
CGTGTCAGAA CATTTTTCTT CTGCTTTCAT TGTTTCATTA GTTTTACTTG TAGGTGAATA GAAATCTAAC TTCTCATCCA
CTCGAGTTGC AATTCTTTGT GATTCTAATG CTTAATTTGG ACTGCTAATA AGTGAAACTG ATATTGGTGT GTAATGGAGG
ATTGTGTTGT AAAATGGTGG GTAAACTGTA GGACTGTATT TTAACTTGTT CCAGAAGTGG ATACTTTATT TTGAAATTAC
ATTCTGTGGC GTTAATCAGT GTTTACAATT TTTCTGTAAA GTGCGACTTG AAGGATTAAA ATTGTTGCGG TTATAACCAT
TGAACAAACG TTTTCTTCAC TGACTTATTG CAAATGGTTG TGCCTTGCGT TTTCCAGGTT GGAGTGGTGC GAAAGGATAA
TCCAGAATTC AGAGTTCTAA CCACTGAGGA AATTGATGAG CACTTGACTG CAATAAGTGA GCGTGACTGA GTTCTTAATA
GCATGTAATT GTTCAATCTT TCTAATGCTA GATTAAATTA TGCATTTGCT TTCTCGGATC ACATTCAACG AATTGATTTC
CTTGTGATAA TTTGATTAGT ATGTAACCGA AGAATGTTGT TGAAGATGGT ATTTGCTTCC TATTACAAGT TTATTTGGGA
GAACATTTTA TGTTCAACCA ATCTCTCCAT ACACTTTAAA AGAAGTTGGT GATTACGTAA TGAAGTCATG CATGGTGTTA
AAAATTTTGG CCTTGCGTGG AGATTTGAAC TTCAA

>Vigan.06G035900.01
CAAAATGAAA CCCCCTTGTT TTCTTGAGTA GGAAGTTGAG ATCGACACTT TAATACCGGA AGAGCACCGT CTCCACTCTC
GACTTCTTCG TTGCACTTTC TCGAAAACCA ATACACCACT CTCGTCGCCG CCGTCATCGT CGTCGACCAT CGCAAGCGCT
GTCGCACTCC GCTGTCATCC GTTAGGGTTA AGATGAGTCG AGGAAGTGGA GGCGGATACG ATCGTCACAT CACTATTTTC
TCTCCCGAGG GACGCCTCTT TCAAGTTGAG TATGCTTTCA AGGCTGTTAA GGCTGCTGGA ATCACCTCAA TCGGTGTCCG
AGGAAAGGAT TCCATTTGTG TTGTTACTCA GAAGAAGGTT CCGGATAAGC TTTTGGACCA GACAAGTGTT ACACACCTCT
TTCCCATCAC AAAGTACCTT GGTTTGTTGG CGACTGGCAT GACAGCTGAT GCTAGGACAC TGGTCCAACA AGCAAGAAAT
GAAGCAGCTG AGTTTCGCTT TACATATGGA TATGAGATGC CTGTAGATGT GTTAGCTAGA TGGATTGCAG ACAAATCACA
AGTCTATACC CAACATGCAT ATATGAGACC ACTTGGAGTA GTTGCTATGG TTTTGGGTAT AGATGATGAA TACGGACCAC
AGCTTTACAA ATGTGATCCT GCTGGTCATT ACTTTGGTCA CAAGGCCACA AGTGCTGGAT TGAAGGACCA AGAGGCAATT
AATTTCTTGG AAAAGAAGAT GAAGAATGAC CCTTCATTTA CTTATGAGGA GACGGTGCAG ACTGCCATTT CTGCTCTCCA
ATCAGTTCTT CAGGAGGATT TTAAGGCCAC TGAGATTGAG GTTGGAGTGG TGCGAAAGGA TAATCCAGAA TTCAGAGTTC
TAACCACTGA GGAAATTGAT GAGCACTTGA CTGCAATAAG TGAGCGTGAC TGAGTTCTTA ATAGCATGTA ATTGTTCAAT
CTTTCTAATG CTAGATTAAA TTATGCATTT GCTTTCTCGG ATCACATTCA ACGAATTGAT TTCCTTGTGA TAATTTGATT
AGTATGTAAC CGAAGAATGT TGTTGAAGAT GGTATTTGCT TCCTATTACA AGTTTATTTG GGAGAACATT TTATGTTCAA
CCAATCTCTC CATACACTTT AAAAGAAGTT GGTGATTACG TAATGAAGTC ATGCATGGTG TTAAAAATTT TGGCCTTGCG
TGGAGATTTG AACTTCAA

>Vigan.06G035900.01
ATGAGTCGAG GAAGTGGAGG CGGATACGAT CGTCACATCA CTATTTTCTC TCCCGAGGGA CGCCTCTTTC AAGTTGAGTA
TGCTTTCAAG GCTGTTAAGG CTGCTGGAAT CACCTCAATC GGTGTCCGAG GAAAGGATTC CATTTGTGTT GTTACTCAGA
AGAAGGTTCC GGATAAGCTT TTGGACCAGA CAAGTGTTAC ACACCTCTTT CCCATCACAA AGTACCTTGG TTTGTTGGCG
ACTGGCATGA CAGCTGATGC TAGGACACTG GTCCAACAAG CAAGAAATGA AGCAGCTGAG TTTCGCTTTA CATATGGATA
TGAGATGCCT GTAGATGTGT TAGCTAGATG GATTGCAGAC AAATCACAAG TCTATACCCA ACATGCATAT ATGAGACCAC
TTGGAGTAGT TGCTATGGTT TTGGGTATAG ATGATGAATA CGGACCACAG CTTTACAAAT GTGATCCTGC TGGTCATTAC
TTTGGTCACA AGGCCACAAG TGCTGGATTG AAGGACCAAG AGGCAATTAA TTTCTTGGAA AAGAAGATGA AGAATGACCC
TTCATTTACT TATGAGGAGA CGGTGCAGAC TGCCATTTCT GCTCTCCAAT CAGTTCTTCA GGAGGATTTT AAGGCCACTG
AGATTGAGGT TGGAGTGGTG CGAAAGGATA ATCCAGAATT CAGAGTTCTA ACCACTGAGG AAATTGATGA GCACTTGACT
GCAATAAGTG AGCGTGACTG A

>Vigan.06G035900.01
MSRGSGGGYD RHITIFSPEG RLFQVEYAFK AVKAAGITSI GVRGKDSICV VTQKKVPDKL LDQTSVTHLF PITKYLGLLA
TGMTADARTL VQQARNEAAE FRFTYGYEMP VDVLARWIAD KSQVYTQHAY MRPLGVVAMV LGIDDEYGPQ LYKCDPAGHY
FGHKATSAGL KDQEAINFLE KKMKNDPSFT YEETVQTAIS ALQSVLQEDF KATEIEVGVV RKDNPEFRVL TTEEIDEHLT
AISERD*