GBrowse Details

Vigan.05G252200.01

Basic Information:
Name: Vigan.05G252200.01
Multiple alignment
Variant Information
Position: Chr05:31962103..31965861 (- strand)
Length: 3759
Functional Information:
Description: Similar to protein LHCP TRANSLOCATION DEFECT-like. [XP_004493199.1, Cicer arietinum]
InterPro: Ankyrin repeat-containing domain (IPR020683)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.49,1.29,14.46,113.22,3.23,13.15,2.95,15.05
Arabidopsis thaliana homolog: AT1G50900.1
Automatic updates:
Name: NM_001251389 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499940 (LOC100499940), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:31962103..31962242 (- strand)
Length: 140
Type: three_prime_UTR
Position: Chr05:31962243..31962497 (- strand)
Length: 255
Type: CDS
Position: Chr05:31965403..31965678 (- strand)
Length: 276
Type: CDS
Position: Chr05:31965679..31965861 (- strand)
Length: 183
Type: five_prime_UTR

>Vigan.05G252200.01 class=Sequence position=Chr05:31962103..31965861 (- strand)
ATTCTTTTAG TCACTAATAA AATAAATAAA GTTGTAGGGT GAAGAGAGAA AAGTAGGGGT GTAAGAAAAA AATCTGCATA
GTTGGTGGAT AGCATCTATG AGACAGTGTG TGGATAGCAA CACACAATAC AAAAGAAGTG AAACTTTCAC TACAGAAGCT
TGCTGTTTCA AAACTCAACA GCAATGGCTT CTATCTCATG CATCACCCAC CACCCCGCCA CTTCCAAGCT AAAAACTTTC
TCCCCTTCAC CTCACGCTTA TGCCTCAAAC TTGGCTTCCA GGTTTCTGGG CACAAAAAAA AGTGTTGGGT GGCTCAGCCT
CACCTCTAGT ATTGGCCCCT CCAACGGCTC CAGAGCCACG TGCTGGTTCA GGTTCGGGAA GAACGGTGTT GATGCCGAAG
GTGCTGGCAT TTATGGCAGC CAGAGCCGTG ATGACTTCGA TAGAGATGAT GTGGAGCAGG TTTGTGATTG AAGCTGTTAG
AGAGTTGTTA GTTATTACAA TTGTGTCATG CTTACGCATG TGGTAATGCT GTTCAAGTTC ATTGTTGTTT GTGTTAGGAA
ATTACATTAA GTTAGGGGTA AGATTATATG TGCATGTTAG CTGTTTGGAA AATTTTTAGC TTGTGGAGAT TTGACATGAG
AGATTATGCC TATGCATAGC TGGTCTGTGT TTTGGGGGTG GCTTTAAGAA GTGGGGATAT TTTTCATTTA CATTAGGATT
TTCTAATCTC ATGTAGCAAG AAGAATATAA AAGTGAGTGC ATGTTCTTAA AGGGGTTAGC GAGTTAGACT GAGGGAATCG
ATTTGGTAAA TAAAGGCACA TTCAGAGAAT TAGAAAGTTT GTGAGGAAAG AGAAACTCTT CTTGCGAAGG AGAAACCCTT
GGAGGGATTT GTTGTTCTTG GAGTCACTGT AGATTTCTTC TATTAGGCTG GAATGTTGAT TTGGGTTGGA ATTGCTATGA
TGAATAGATG TTTAAATCTG CTTGATCTTT TACCCAATTT TGAGCTGTGA TTGACTCATC TTCCATATTG TTATTAAAAT
ACCTTACAAA CAAGTCTCAC TAAGACATGA TTGCCATGGA ATAATATAAA TTGTAACGGA TTAGGCCTCT GCTCAAGGTA
ATCACTTAAT ACATTGAGAA TGGTAATACA CTTGTCAACA ACTCATCTTG CCACATCTGC TAGAAAATAG ATAGAAGTCC
GTTCACATCC CATCCATTCT TTACCGTTAT GCATTTTTGT TATGTAATCT TGAATCAATC AACTTATATG AACAATCTCT
TACAATGTCA TCAAATTTAA AAGGCTAAAC TTAAAAAATA TTCTAGTACA CCACCTGAAG AGACTTTAGG CCAACATCCC
TTCTAAGTAC AATACAGGTT ATAAGGTGGA GGGACAGAGT GGCGTGAGGA AAGAAGATTG AGGTATCAAG TCTATGGCTT
CATAAAGAAC TGATAAAAGA AACAGAATAC TTTTCCAGTA TTGAAATTGG AGATAGGGTG GAATGAGGTT TGAGATTTGG
GTAGAAATAT TTTTTACCAA GTTTACCTTT GCCATAAAGT TATTCCAATA GAAAATAAGC AAAGAATCTC CAAACATGAT
TCATTTCTTT TCTCAGGAAC AACTTCCAGT AGACTATGAG AAGAGAACTA ATTGACAAGT TTGACGTCAT TATTTATTCC
CATGTGCCAG TGGTCTATTC TTTCTTTCAA ATCCATTTCT TGATGGTGAA CTAAAAGAAT ATTGATTTTT CAAGTTCCCA
AGGAATGAAC ATCAAGTTTT TAGACTGTTT GCTGTAGCAA AGCCCAGTCT ATAAACTGGT TAAGGTATCA AAGACTCCAT
CTAGAAAAGC AAACCATCCC GATATTTTCA AATGTTCCAA CTTAATAGGA TATTCTTTGA TTTAAGCCAC ATTGGTAGAA
GTTTATTCCA CTGATAATAT ACATTCCCTT ATTCAACCAT TCTCTCAAAC AAAGTCCTAT AAAACAAACA CAATACATAC
TGAGTAAACC AAGGCATGAA AGATTTAATA TTCATCTGCA ACATATGATA ATATACTTTA ATAACCCTGT ACATCTAGAC
CAACACAAAA AGCTAATATC AGGGAATATA AATATAACTA TTATTAAACA TTAGAAATAA GATTAATAGG GGCCGCGCGA
ACGCAGGCCC CCACTTCAAC AAATTATGAC ATAGGCTCTG TCACTAGGAC AGACCTTAGA AAAGCACCCA TTCAAAGTGC
AATGAAAGTC ACTTTTCTAG GCCATGGACC TTCTTGATCG CCCATTGACC CTGTCCAGGT AAGTATTTTA CACTGAGTGA
CACATTTGAT ATTTGTAGTC TATTATTACT GTTACTATAT CTATCATTGT CGATGTGGGA TTGGAACAGA GTTAACTGGT
ACTTCTGTTC GTTGGACATT TGTTTAGCTT TAATATCACT CCGACTAAGA AATTGAGCGT CCAATAAGAA AATGACGTGA
CGTTTAACAC TGATGCTACT CCACTCTGCA AAATTTTATA GTCAAACTAC TATCACAAAG ATGTAATAAA ATCATTATCT
CAATTTCGTT ATATCTATTC AAAATATTTT TTGTTTGATT TTTAGAGTAG TCTCACTTTT TATGAAAGAG AAACTCTTGG
AGGAAAGTTC ATATTCTCAT CCTTATTAGT TTAATAAGAT TGTTCATGTC CTGTTATTGC TTACATGCTT CCATTTCTAG
GATAAGATTG GAACTTTTTA ACAGTTTTTT ATAATAATAA AATTGTAAGT AAACAAAAGG AGAAAGTAGG CAAGAACATA
ATTGAATAAA AGAGACAGTA ATGAAGCCCT TATTATTTTT CTCTACTAGG AGTTTACAGC TACTAAGGAA TGTGAATGAT
GTTTGTTGAT TCGAAATTTT AAACTTCTGC AACTGTTAAC TATTATGTTT ATGCATTTAC TAGGATTTGT TCTTGGAGTC
GCTCTAACTG CAATTTAGTA AATGGAAACT TAATAACTAG AGCATTAGTT ACAAAACTTT AGTAAATGGT AACAATGAGA
TGAATTCATC ATAGTGATAT CTTGAGAACT CAAACATTTG AGTCACAGAT AAGTCAAGCA AACACTTTGT ACGACTTTTC
TCTGCATTAG TTTATCTAAA TTGTTTGTGT ATTATTCAGT TCAAACTGTA ACTCTATTGG GTATCTATTT TATTCTAACT
TTCATTTACT TTTCCTGTTC TTAGATTGAC TTTCCATGGT AATTTTGGAA ATTCAGTTTT GGAAGAGAAA GTGCTTTTAT
TTCTAAAAGC ATGAATGAAC TTTACAATGA CATCATAACA TTTTTCTGCA CATCATATAA TTCACATTTG ATAAAATTAT
ACAGTACTTC AACTACATGG GGATGCTAGC AGTAGATGGA ACCTATGATA AAATGGAAGC CCTTCTAAGC CTAAACATCC
ACCCTGTGGA CATCCTTCTC CTATTAGCTG CATCAGAAGG TGACAAGCCA AAAATTGAAG AACTCCTGAG AGCTGGAGCA
AAATATGATG TAAAAGATAG AGAGGGTAGG ACCGCATTGG ACCGAGCCAA CGAAGAAATT AAAGAATTCA TTCTTAATTT
TTCAGTGCAA AGGGCATGAT TTGTTTGTTT CCACCATAAG CATGCCTATT CAGCTACATA GTTGCTAACA TTTTGATAAC
TTTTGAACTC TGTTAGTTTA TATGCTTTGG ATTAATCATC AGAATGGATT TGAATACCCA TAAAACCAAG AGTTCTTCG

>Vigan.05G252200.01
ATTCTTTTAG TCACTAATAA AATAAATAAA GTTGTAGGGT GAAGAGAGAA AAGTAGGGGT GTAAGAAAAA AATCTGCATA
GTTGGTGGAT AGCATCTATG AGACAGTGTG TGGATAGCAA CACACAATAC AAAAGAAGTG AAACTTTCAC TACAGAAGCT
TGCTGTTTCA AAACTCAACA GCAATGGCTT CTATCTCATG CATCACCCAC CACCCCGCCA CTTCCAAGCT AAAAACTTTC
TCCCCTTCAC CTCACGCTTA TGCCTCAAAC TTGGCTTCCA GGTTTCTGGG CACAAAAAAA AGTGTTGGGT GGCTCAGCCT
CACCTCTAGT ATTGGCCCCT CCAACGGCTC CAGAGCCACG TGCTGGTTCA GGTTCGGGAA GAACGGTGTT GATGCCGAAG
GTGCTGGCAT TTATGGCAGC CAGAGCCGTG ATGACTTCGA TAGAGATGAT GTGGAGCAGT ACTTCAACTA CATGGGGATG
CTAGCAGTAG ATGGAACCTA TGATAAAATG GAAGCCCTTC TAAGCCTAAA CATCCACCCT GTGGACATCC TTCTCCTATT
AGCTGCATCA GAAGGTGACA AGCCAAAAAT TGAAGAACTC CTGAGAGCTG GAGCAAAATA TGATGTAAAA GATAGAGAGG
GTAGGACCGC ATTGGACCGA GCCAACGAAG AAATTAAAGA ATTCATTCTT AATTTTTCAG TGCAAAGGGC ATGATTTGTT
TGTTTCCACC ATAAGCATGC CTATTCAGCT ACATAGTTGC TAACATTTTG ATAACTTTTG AACTCTGTTA GTTTATATGC
TTTGGATTAA TCATCAGAAT GGATTTGAAT ACCCATAAAA CCAAGAGTTC TTCG

>Vigan.05G252200.01
ATGGCTTCTA TCTCATGCAT CACCCACCAC CCCGCCACTT CCAAGCTAAA AACTTTCTCC CCTTCACCTC ACGCTTATGC
CTCAAACTTG GCTTCCAGGT TTCTGGGCAC AAAAAAAAGT GTTGGGTGGC TCAGCCTCAC CTCTAGTATT GGCCCCTCCA
ACGGCTCCAG AGCCACGTGC TGGTTCAGGT TCGGGAAGAA CGGTGTTGAT GCCGAAGGTG CTGGCATTTA TGGCAGCCAG
AGCCGTGATG ACTTCGATAG AGATGATGTG GAGCAGTACT TCAACTACAT GGGGATGCTA GCAGTAGATG GAACCTATGA
TAAAATGGAA GCCCTTCTAA GCCTAAACAT CCACCCTGTG GACATCCTTC TCCTATTAGC TGCATCAGAA GGTGACAAGC
CAAAAATTGA AGAACTCCTG AGAGCTGGAG CAAAATATGA TGTAAAAGAT AGAGAGGGTA GGACCGCATT GGACCGAGCC
AACGAAGAAA TTAAAGAATT CATTCTTAAT TTTTCAGTGC AAAGGGCATG A

>Vigan.05G252200.01
MASISCITHH PATSKLKTFS PSPHAYASNL ASRFLGTKKS VGWLSLTSSI GPSNGSRATC WFRFGKNGVD AEGAGIYGSQ
SRDDFDRDDV EQYFNYMGML AVDGTYDKME ALLSLNIHPV DILLLLAASE GDKPKIEELL RAGAKYDVKD REGRTALDRA
NEEIKEFILN FSVQRA*