VIGGS:Variant information

Chr05:31962103 - 31965861

Filter

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
31962130	C	A	56	2149.77	1.00	UTR_3_PRIME(\|113\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31962537	A	C	56	2290.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31962569	C	G	62	2477.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31962793	G	C	53	2185.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4915\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31962845	G	C	55	2259.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4863\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31962986	T	G	55	2205.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4722\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963115	A	C	65	2659.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4593\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963534	C	G	67	2850.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4174\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963549	G	A	63	2797.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4159\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963550	T	A	62	2797.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4158\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963552	T	C	59	2761.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|4156\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963722	T	C	43	1919.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3986\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963728	C	G	45	1947.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3980\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963808	A	G	55	2176.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3900\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964294	T	A	60	2435.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3414\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964343	C	T	61	2758.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3365\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964346	A	G	63	2814.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3362\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964361	C	T	65	2493.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3347\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964459	G	A	64	2394.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3249\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964522	C	G	56	2149.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3186\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964540	A	T	53	2174.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3168\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964593	A	T	55	2353.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3115\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964665	C	T	66	2586.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3043\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964788	G	A	78	3048.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2920\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964830	A	G	68	2740.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2878\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964997	G	C	66	2656.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2711\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965146	C	T	56	2496.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2562\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965147	T	G	55	2496.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2561\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965187	C	A	52	2102.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2521\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965245	A	C	61	2858.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2463\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965249	A	T	66	2845.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2459\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965321	T	C	61	2455.77	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|2387\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965602	T	G	41	1670.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|tAt/tCt\|Y26S\|None\|Vigan.05G252200.01), UPSTREAM(\|2106\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965644	G	A	47	1767.77	1.00	NON_SYNONYMOUS_CODING(MISSENSE\|gCc/gTc\|A12V\|None\|Vigan.05G252200.01), UPSTREAM(\|2064\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965737	G	C	44	1918.77	1.00	UPSTREAM(\|1971\|\|None\|Vigan.05G252300.01), UTR_5_PRIME(\|59\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31965745	C	T	46	2106.77	1.00	UPSTREAM(\|1963\|\|None\|Vigan.05G252300.01), UTR_5_PRIME(\|67\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31965793	T	C	56	2491.77	1.00	UPSTREAM(\|1915\|\|None\|Vigan.05G252300.01), UTR_5_PRIME(\|115\|\|None\|Vigan.05G252200.01)	Vigna nepalensis
31965794	T	C	56	2491.77	1.00	UPSTREAM(\|1914\|\|None\|Vigan.05G252300.01), UTR_5_PRIME(\|116\|\|None\|Vigan.05G252200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
31963864	AT	A	55	2452.73	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3843\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963866	GTATTGTGTTTGTT	G	56	2452.73	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3841\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31963882	ATAGGACTTTGTTTGAGAGAATGGTTGAATAAGGGAATGTATATTATCAGTGGAATAAACTTCTACCAATGTGGC	A	52	2429.73	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3825\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964556	A	AT	56	2272.73	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3151\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31964699	AGTT	A	68	3022.73	1.00	INTRON(\|\|\|None\|Vigan.05G252200.01), UPSTREAM(\|3008\|\|None\|Vigan.05G252300.01)	Vigna nepalensis
31965756	C	CG	47	2099.73	1.00	UPSTREAM(\|1951\|\|None\|Vigan.05G252300.01), UTR_5_PRIME(\|79\|\|None\|Vigan.05G252200.01)	Vigna nepalensis