GBrowse Details

Vigan.05G179500.01

Basic Information:
Name: Vigan.05G179500.01
Multiple alignment
Variant Information
Position: Chr05:15384034..15388711 (+ strand)
Length: 4678
Functional Information:
Description: Similar to Asparagine synthetase. [M1VI28, Vigna unguiculata]
GO: Biological Process: asparagine biosynthetic process (GO:0006529)
Biological Process: metabolic process (GO:0008152)
Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066)
InterPro: Class II glutamine amidotransferase domain (IPR000583)
Asparagine synthase (IPR001962)
Asparagine synthase, glutamine-hydrolyzing (IPR006426)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Glutamine amidotransferase type 2 domain (IPR017932)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:122.61,59.85,67.39,7.39,0.93,14.14,1872.54,8.25
Arabidopsis thaliana homolog: AT3G47340.1, AT5G10240.1, AT5G65010.2
Automatic updates:
Name: NM_001248563 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase (LOC547877), mRNA.
PubMed ID: 9501527 NCBI(pubmed)
Status: Known Variant
Name: NM_001248809 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase 1 (AS1), transcript variant 1, mRNA.
PubMed ID: 16547873 NCBI(pubmed)
9037148 NCBI(pubmed)
Status: Known Variant
Name: NM_001349123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase 1 (AS1), transcript variant 2, mRNA.
PubMed ID: 16547873 NCBI(pubmed)
9037148 NCBI(pubmed)
Status: Known Variant
Name: NM_001360409 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase [glutamine-hydrolyzing] 2 (LOC100798318), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001360410 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max asparagine synthetase [glutamine-hydrolyzing] 2 (LOC100798318), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:15384034..15384214 (+ strand)
Length: 181
Type: five_prime_UTR
Position: Chr05:15384215..15384294 (+ strand)
Length: 80
Type: CDS
Position: Chr05:15385260..15385398 (+ strand)
Length: 139
Type: CDS
Position: Chr05:15385782..15385877 (+ strand)
Length: 96
Type: CDS
Position: Chr05:15386072..15386213 (+ strand)
Length: 142
Type: CDS
Position: Chr05:15386325..15386515 (+ strand)
Length: 191
Type: CDS
Position: Chr05:15386753..15386914 (+ strand)
Length: 162
Type: CDS
Position: Chr05:15387014..15387094 (+ strand)
Length: 81
Type: CDS
Position: Chr05:15387193..15387414 (+ strand)
Length: 222
Type: CDS
Position: Chr05:15387511..15387645 (+ strand)
Length: 135
Type: CDS
Position: Chr05:15387728..15387808 (+ strand)
Length: 81
Type: CDS
Position: Chr05:15387891..15387977 (+ strand)
Length: 87
Type: CDS
Position: Chr05:15388065..15388172 (+ strand)
Length: 108
Type: CDS
Position: Chr05:15388253..15388468 (+ strand)
Length: 216
Type: CDS
Position: Chr05:15388469..15388711 (+ strand)
Length: 243
Type: three_prime_UTR

>Vigan.05G179500.01 class=Sequence position=Chr05:15384034..15388711 (+ strand)
TACGTGTTGT CCATTCCCCT CTCATTGCTT CATCTTCGTT TCTCAGATAA TTTCCTTCTT TCTCTGTTTA TCTTCTCTTT
TTATCATTGA TCTCTCTTTC TTTTCTTCCT TTTTCTCTCT CAAGATTTTC TCTCTTCGTC ATACTTCACA TATCATATCA
TAGCAATTTT ATCATAACGC AATGTGTGGC ATACTTGCTG TGCTTGGTTG CTCTGATTCA TCACAAGCCA AGAGGGTCCG
CGTCCTTGAG CTTTCTCGCA GGCAATGATT CTCTTTTTGT CTTCTTCTTA TTCACACAAA ATCAAACAAA GCAAAATTAA
TCTTGAGCTG TTTTCTTTTC AAATACCCTT TGCTTAACTT TGATCTTTCT ATTCAAAGTT TATTGTTTTG TGCATTTTTT
CCCAGCCCAA AAAGAACAAT TCTTTTCTAA CTGAACTTTT CTATGCTAAT ATTTACTGAA AAGTGGAAAA CTCAGCGTGA
TGGTAACAGT ATTTTTAGCA GCTAATATAC TGAAACTTAA TCAACTAGCT GTAAAAAATG ACTATGACAC TTAGGAAGAG
ATAAAAGATG GAAAAATAAA GTGTCCCAAA GTTGTTGTTT AAATTATCAT TATTATACTC TGTACACTGA CAGGAGAGCA
GAAGAACCAT AAAAAAAGGT GGTGCTTGTA ATTTGTTTCC TTGTTTTAAG TTTCATGGTG GTATCTTTTA GGGAAAAAAA
TTGTTGGACA CTAATCTTTA GTTAATGCCA AGAGAGAAGT GTTTGCAAAA AGTTATATGA TGTGATAAAA ATCATGATAA
AGTAAACCTC TATGCTTGTT ATTTTCTACT ATCAAGTTCA TTCAATATTT TAAAGGGAAC GACTAAAACA TATGTAAGTG
TTAAAATCAT AGTTATTACT TAATATTGGG GGCAGTATGA TGCCAACCTT TTAGATGTAA CAAGTATTTA AGGATAAACA
TGTTTGGACT TTGACAAGCT AAGTGGATTC TAGAATAAAC AAGTGTTCTG GTTAGATCAT TAACTTATTT GGATAAACCA
GTGGCATGTG GGGTCCACCT TGCTGTGAAA TTATTGGTAA CTTTGTGGTG GGAAAGTACA ACAGAAGAAC AGAAGTTGGA
AAGTAATGGA TAGGATAGGA GTTAATTTGT CTGAAAGTGC TAAAGGAAAT TTTCAAAGTG AAGTTTGAAC AAGTAGTTAA
TAATTTGCCA TTCGATGACG TCACAGATTG AAGCACCGTG GTCCTGACTG GAGTGGGCTC CACCAATATG GAGATTGCTA
TTTGGCTCAT CAACGGTTAG CCATAGTTGA TCCAGCTTCT GGTGATCAAC CTCTCTTCAA TGAAGACAAA ACTATTGTTG
TTACGGTAAG CCTTTGTTCA ATTATTTGAA CTTACACTGT CATGGTATGG AAAATTGGTA ATAATACACA AGAAAGTAGA
GTCCTGCAAA CACAGATTAG TCCGAAGTTA TGAGCTTTAA AGTACTGTGT GTGAATTATG TCCATGAAAA AAAATAGTGT
TGTTAGACTT TAACTATAAT TGTCTTCAAA ATCATTTAAA CAACAGCTTC TGTTAATTTA CACTGATTTA CAATTTGACT
ATTAAACTCA TGATACATAA ATAGAAATAC AAAAAACTGG AATGTATACC ATAGTAACAT ATAGCTTTTG TTACATTTAT
TTATTAGTCT TACGAATTTA ACAGCGATGA ATTATGACTC ACGTTAAATG TCATCCACTG AAAACCAGGT GAATGGAGAG
ATCTACAATC ATGAAGAGCT CAGGAAACAA TTACCTAATC ACACGTTCCG TACAGGAAGT GACTGCGATG TTATTGCTCA
CCTGGTTAGT CATCTTTATG TATAATTTTG CAACAATTCT GACCTGGTCA TGTATGCATA AAACCCAACA GAAACTTTAT
AAACTTTTTT GTTTTATTCA TTAATTCTTG TTAACACTTC TTGAAGTTTT CATTTCTGTG GCTACTCATG ATTGGATTTC
TTGTTCTTAT CATCTGTATG TTGTTGGTGT TGTTTTAGTA CGAGGAGCAC GGAGAAAACT TTGTGGACAT GCTTGATGGT
ATATTTTCAT TTGTTCTGTT GGATACCCGT GACAACAGTT TTATAGTGGC ACGAGATGCA ATTGGAGTCA CTTCCTTATA
CATTGGTTGG GGTCTAGATG GTAATGATAA AATATGTGCC CTGCTTTTGA ATTGAATTTG TGTGTTCTAT TTGAAATCAA
CCAGCAGATT TGGATTGAAT AATAGTGACT AATTTGCATA CTTTTGTTCA GGCTCTGTGT GGATTTCATC AGAATTGAAA
GGGCTAAATG ATGATTGTGA ACATTTCGAG TCTTTTCCAC CTGGTCACTT GTACTCTAGC AAAGAGAGAG AATTTCGTAG
ATGGTACAAT CCTCCATGGT TCTCTGAGGC TATTCCTTCA GCCCCTTATG AACCTCTAGC TTTGAGGCAT GCCTTTGAGA
AGGTAAGATA CACAGAAGAC TCAACACATC ATTGTAATTG AAAGTTTATC CAAAAGCCAC CAACTTGGTT AGCTTTGGAA
AAGCCTTCGT GTAAACTATT TTTAGTTTAT TTCAATAAGC TTCATCTAGA AGCTTATCAA ATATGCTTTC AGGTGATAAG
CTTTTATTTA AACATGTAGT TGATTAAGTT GTTTATCCAA ACACAGCATT TTCATAGAAA CATTGAATGT TATTTGCAGG
CTGTGATCAA AAGGTTGATG ACTGATGTTC CTTTTGGTGT TTTACTCTCT GGAGGTTTGG ACTCTTCATT GGTTGCAGCT
GTCACGGCTC GCTACCTGGA AGGCACAAAT GCTGCCAAGC AATGGGGAAC AAAATTACAC TCTTTCTGTG TAGGACTTGA
GGTGCGTGTG TACCTATTCT TGCAAGTGTT GTAGCTTTCT TCAATAAAAG AAGGAAACCA TGAAGTTTGT CTTAATCTTT
AATTATATTA TGCTGAGTAG GGTGCACCAG ATCTAAAGGC TGCAAAAGAA GTAGCAGATT ACATAGGAAC TGTCCATCAT
GAATTTCACT ACACTGTTCA GGTATATATA CATGAGATAG TAGTTTACTG CTCAAAATTT GGGGGCATTT TGATGTACAA
AATCATAATT AATGAATACT TTATGTATGG TAATTGCAGG ATGGCATAGA TGCCATTGAA GATGTGATTT ACCACATTGA
AACATATGAT GTAACGACAA TTAGAGCCAG CATTCCCATG TTTCTTATGT CTCGTAAGAT TAAGTCACTA GGAGTCAAGT
GGGTTATCTC TGGAGAAGGA TCTGACGAGA TCTTTGGAGG TTATCTATAT TTCCACAAGG CACCCAACAA AGAAGAGTTT
CACCAAGAAA CATGCCGCAA GGTTACAGGG TTATCATACT TATTGCCTGA TCAATTTAAT TGGCTGGACT TTTGAAGTAA
AAGGGCTAAT AGATGATACT TTTTCTATTT AATGCAGATT AAAGCACTCC ACCAATATGA TTGCTTGCGA GCCAATAAAT
CGACCTTTGC ATGGGGTCTA GAAGCCAGAG TACCATTTTT GGACAAAGAG TTTATCAAAG TTGCAATGGA CATTGATCCT
GAGTACAAAA TGGTAACTGC TGAGAAAGTT GCAATACACC ATCACTTAAA AAATGTTACA CTTAATTAAG TGGTTTACTA
CTTCATATTT TCAGATAAAA AAAGAAGAAG GGAGAATTGA GAAATGGGTA CTGAGGAGGG CATTTGATGA TGAAGAGCAT
CCTTATCTGC CAAAGGTAAT CTCATTTGCA GCAAAGTTTT ACAACGTTAC AGAATTCATT TTGTTGAACT AACATGATAG
AGTTTCATTT TATGCAGCAT ATTTTATATA GGCAGAAAGA ACAATTCAGT GATGGAGTTG GCTATGGTTG GATTGATGGT
CTTAAAGCTC ACGCTGAGAA ACATGTACAA CTTGAAGAAA ACTCTTTTTC TCTTATTATC ATAACATTTG ATATTGCTAA
CTAATTATTG GTTCTTCAAA TTTTCCTAAA GGTAACTGAT AGAATGATGC TCAATGCTGC TAACATTTTC CCATTCAACA
CTCCAACCAC CAAAGAAGCA TACTACTATA GAATGATATT TGAGAGGTTC TTCCCTCAGG TAAATTGAAT CAAAGATACC
AAGACATTGA AAAATCCATG CTGATCTAAA TCCATGTGTT CCTTAATTTG ATTTTGCAGA ACTCAGCTAG GCTCACTGTT
CCTGGAGGAC CAAGTGTTGC ATGTAGCACA GCAAAAGCTG TTGAGTGGGA TGCTGCATGG TCCAACAACC TTGATCCATC
TGGTAGAGCA GCACTAGGAG TGCATTCATC AGCTTATGGG AACCAGGTGA AAGCTGTAGA ACCAGAGAAG ATCATACCCA
AGATGGAAGT TTCTACCTTA GGAGTTGCCA TCTAGAACAA GCATGAGCCA TAGCAAAGGA CTATTAGAAA TACTAGTCAT
CATTAATGAA ATTTTGCCTG CTTTGTATTT TATCCAGGCA ATGTCATATT ATAGATAAAG GCTCTCCTTA TCTTCCGGTG
TTAAGTGTTG TTATCAACTT CTTGTGTTTA CTTTCAATCT GTCACCTTAC ACTATCATAA TTGTTAAGTG TTGTTTACCT
GGCTCTCTTG TATCAGTTAA ATTTGAATGC AAACCCCA

>Vigan.05G179500.01
TACGTGTTGT CCATTCCCCT CTCATTGCTT CATCTTCGTT TCTCAGATAA TTTCCTTCTT TCTCTGTTTA TCTTCTCTTT
TTATCATTGA TCTCTCTTTC TTTTCTTCCT TTTTCTCTCT CAAGATTTTC TCTCTTCGTC ATACTTCACA TATCATATCA
TAGCAATTTT ATCATAACGC AATGTGTGGC ATACTTGCTG TGCTTGGTTG CTCTGATTCA TCACAAGCCA AGAGGGTCCG
CGTCCTTGAG CTTTCTCGCA GATTGAAGCA CCGTGGTCCT GACTGGAGTG GGCTCCACCA ATATGGAGAT TGCTATTTGG
CTCATCAACG GTTAGCCATA GTTGATCCAG CTTCTGGTGA TCAACCTCTC TTCAATGAAG ACAAAACTAT TGTTGTTACG
GTGAATGGAG AGATCTACAA TCATGAAGAG CTCAGGAAAC AATTACCTAA TCACACGTTC CGTACAGGAA GTGACTGCGA
TGTTATTGCT CACCTGTACG AGGAGCACGG AGAAAACTTT GTGGACATGC TTGATGGTAT ATTTTCATTT GTTCTGTTGG
ATACCCGTGA CAACAGTTTT ATAGTGGCAC GAGATGCAAT TGGAGTCACT TCCTTATACA TTGGTTGGGG TCTAGATGGC
TCTGTGTGGA TTTCATCAGA ATTGAAAGGG CTAAATGATG ATTGTGAACA TTTCGAGTCT TTTCCACCTG GTCACTTGTA
CTCTAGCAAA GAGAGAGAAT TTCGTAGATG GTACAATCCT CCATGGTTCT CTGAGGCTAT TCCTTCAGCC CCTTATGAAC
CTCTAGCTTT GAGGCATGCC TTTGAGAAGG CTGTGATCAA AAGGTTGATG ACTGATGTTC CTTTTGGTGT TTTACTCTCT
GGAGGTTTGG ACTCTTCATT GGTTGCAGCT GTCACGGCTC GCTACCTGGA AGGCACAAAT GCTGCCAAGC AATGGGGAAC
AAAATTACAC TCTTTCTGTG TAGGACTTGA GGGTGCACCA GATCTAAAGG CTGCAAAAGA AGTAGCAGAT TACATAGGAA
CTGTCCATCA TGAATTTCAC TACACTGTTC AGGATGGCAT AGATGCCATT GAAGATGTGA TTTACCACAT TGAAACATAT
GATGTAACGA CAATTAGAGC CAGCATTCCC ATGTTTCTTA TGTCTCGTAA GATTAAGTCA CTAGGAGTCA AGTGGGTTAT
CTCTGGAGAA GGATCTGACG AGATCTTTGG AGGTTATCTA TATTTCCACA AGGCACCCAA CAAAGAAGAG TTTCACCAAG
AAACATGCCG CAAGATTAAA GCACTCCACC AATATGATTG CTTGCGAGCC AATAAATCGA CCTTTGCATG GGGTCTAGAA
GCCAGAGTAC CATTTTTGGA CAAAGAGTTT ATCAAAGTTG CAATGGACAT TGATCCTGAG TACAAAATGA TAAAAAAAGA
AGAAGGGAGA ATTGAGAAAT GGGTACTGAG GAGGGCATTT GATGATGAAG AGCATCCTTA TCTGCCAAAG CATATTTTAT
ATAGGCAGAA AGAACAATTC AGTGATGGAG TTGGCTATGG TTGGATTGAT GGTCTTAAAG CTCACGCTGA GAAACATGTA
ACTGATAGAA TGATGCTCAA TGCTGCTAAC ATTTTCCCAT TCAACACTCC AACCACCAAA GAAGCATACT ACTATAGAAT
GATATTTGAG AGGTTCTTCC CTCAGAACTC AGCTAGGCTC ACTGTTCCTG GAGGACCAAG TGTTGCATGT AGCACAGCAA
AAGCTGTTGA GTGGGATGCT GCATGGTCCA ACAACCTTGA TCCATCTGGT AGAGCAGCAC TAGGAGTGCA TTCATCAGCT
TATGGGAACC AGGTGAAAGC TGTAGAACCA GAGAAGATCA TACCCAAGAT GGAAGTTTCT ACCTTAGGAG TTGCCATCTA
GAACAAGCAT GAGCCATAGC AAAGGACTAT TAGAAATACT AGTCATCATT AATGAAATTT TGCCTGCTTT GTATTTTATC
CAGGCAATGT CATATTATAG ATAAAGGCTC TCCTTATCTT CCGGTGTTAA GTGTTGTTAT CAACTTCTTG TGTTTACTTT
CAATCTGTCA CCTTACACTA TCATAATTGT TAAGTGTTGT TTACCTGGCT CTCTTGTATC AGTTAAATTT GAATGCAAAC
CCCA

>Vigan.05G179500.01
ATGTGTGGCA TACTTGCTGT GCTTGGTTGC TCTGATTCAT CACAAGCCAA GAGGGTCCGC GTCCTTGAGC TTTCTCGCAG
ATTGAAGCAC CGTGGTCCTG ACTGGAGTGG GCTCCACCAA TATGGAGATT GCTATTTGGC TCATCAACGG TTAGCCATAG
TTGATCCAGC TTCTGGTGAT CAACCTCTCT TCAATGAAGA CAAAACTATT GTTGTTACGG TGAATGGAGA GATCTACAAT
CATGAAGAGC TCAGGAAACA ATTACCTAAT CACACGTTCC GTACAGGAAG TGACTGCGAT GTTATTGCTC ACCTGTACGA
GGAGCACGGA GAAAACTTTG TGGACATGCT TGATGGTATA TTTTCATTTG TTCTGTTGGA TACCCGTGAC AACAGTTTTA
TAGTGGCACG AGATGCAATT GGAGTCACTT CCTTATACAT TGGTTGGGGT CTAGATGGCT CTGTGTGGAT TTCATCAGAA
TTGAAAGGGC TAAATGATGA TTGTGAACAT TTCGAGTCTT TTCCACCTGG TCACTTGTAC TCTAGCAAAG AGAGAGAATT
TCGTAGATGG TACAATCCTC CATGGTTCTC TGAGGCTATT CCTTCAGCCC CTTATGAACC TCTAGCTTTG AGGCATGCCT
TTGAGAAGGC TGTGATCAAA AGGTTGATGA CTGATGTTCC TTTTGGTGTT TTACTCTCTG GAGGTTTGGA CTCTTCATTG
GTTGCAGCTG TCACGGCTCG CTACCTGGAA GGCACAAATG CTGCCAAGCA ATGGGGAACA AAATTACACT CTTTCTGTGT
AGGACTTGAG GGTGCACCAG ATCTAAAGGC TGCAAAAGAA GTAGCAGATT ACATAGGAAC TGTCCATCAT GAATTTCACT
ACACTGTTCA GGATGGCATA GATGCCATTG AAGATGTGAT TTACCACATT GAAACATATG ATGTAACGAC AATTAGAGCC
AGCATTCCCA TGTTTCTTAT GTCTCGTAAG ATTAAGTCAC TAGGAGTCAA GTGGGTTATC TCTGGAGAAG GATCTGACGA
GATCTTTGGA GGTTATCTAT ATTTCCACAA GGCACCCAAC AAAGAAGAGT TTCACCAAGA AACATGCCGC AAGATTAAAG
CACTCCACCA ATATGATTGC TTGCGAGCCA ATAAATCGAC CTTTGCATGG GGTCTAGAAG CCAGAGTACC ATTTTTGGAC
AAAGAGTTTA TCAAAGTTGC AATGGACATT GATCCTGAGT ACAAAATGAT AAAAAAAGAA GAAGGGAGAA TTGAGAAATG
GGTACTGAGG AGGGCATTTG ATGATGAAGA GCATCCTTAT CTGCCAAAGC ATATTTTATA TAGGCAGAAA GAACAATTCA
GTGATGGAGT TGGCTATGGT TGGATTGATG GTCTTAAAGC TCACGCTGAG AAACATGTAA CTGATAGAAT GATGCTCAAT
GCTGCTAACA TTTTCCCATT CAACACTCCA ACCACCAAAG AAGCATACTA CTATAGAATG ATATTTGAGA GGTTCTTCCC
TCAGAACTCA GCTAGGCTCA CTGTTCCTGG AGGACCAAGT GTTGCATGTA GCACAGCAAA AGCTGTTGAG TGGGATGCTG
CATGGTCCAA CAACCTTGAT CCATCTGGTA GAGCAGCACT AGGAGTGCAT TCATCAGCTT ATGGGAACCA GGTGAAAGCT
GTAGAACCAG AGAAGATCAT ACCCAAGATG GAAGTTTCTA CCTTAGGAGT TGCCATCTAG 

>Vigan.05G179500.01
MCGILAVLGC SDSSQAKRVR VLELSRRLKH RGPDWSGLHQ YGDCYLAHQR LAIVDPASGD QPLFNEDKTI VVTVNGEIYN
HEELRKQLPN HTFRTGSDCD VIAHLYEEHG ENFVDMLDGI FSFVLLDTRD NSFIVARDAI GVTSLYIGWG LDGSVWISSE
LKGLNDDCEH FESFPPGHLY SSKEREFRRW YNPPWFSEAI PSAPYEPLAL RHAFEKAVIK RLMTDVPFGV LLSGGLDSSL
VAAVTARYLE GTNAAKQWGT KLHSFCVGLE GAPDLKAAKE VADYIGTVHH EFHYTVQDGI DAIEDVIYHI ETYDVTTIRA
SIPMFLMSRK IKSLGVKWVI SGEGSDEIFG GYLYFHKAPN KEEFHQETCR KIKALHQYDC LRANKSTFAW GLEARVPFLD
KEFIKVAMDI DPEYKMIKKE EGRIEKWVLR RAFDDEEHPY LPKHILYRQK EQFSDGVGYG WIDGLKAHAE KHVTDRMMLN
AANIFPFNTP TTKEAYYYRM IFERFFPQNS ARLTVPGGPS VACSTAKAVE WDAAWSNNLD PSGRAALGVH SSAYGNQVKA
VEPEKIIPKM EVSTLGVAI*