GBrowse Details

Vigan.05G134000.01

Basic Information:
Name: Vigan.05G134000.01
Multiple alignment
Variant Information
Position: Chr05:10878799..10883014 (+ strand)
Length: 4216
Functional Information:
Description: Similar to Serine/threonine-protein phosphatase. [V7BRL3, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Phosphoesterase domain (IPR004843)
Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (IPR006186)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:144.16,245.30,46.30,82.34,113.05,71.37,412.88,75.63
Arabidopsis thaliana homolog: AT1G64040.1, AT2G29400.1, AT2G39840.1, AT3G46820.1, AT4G11240.1, AT5G43380.1, AT5G59160.1
Automatic updates:
Name: NM_001254636 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100799218), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255490 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine/threonine-protein phosphatase PP1-like (LOC100816262), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:10878799..10879089 (+ strand)
Length: 291
Type: five_prime_UTR
Position: Chr05:10879090..10879264 (+ strand)
Length: 175
Type: CDS
Position: Chr05:10880998..10881557 (+ strand)
Length: 560
Type: CDS
Position: Chr05:10881912..10882133 (+ strand)
Length: 222
Type: CDS
Position: Chr05:10882712..10882747 (+ strand)
Length: 36
Type: CDS
Position: Chr05:10882748..10883014 (+ strand)
Length: 267
Type: three_prime_UTR

>Vigan.05G134000.01 class=Sequence position=Chr05:10878799..10883014 (+ strand)
GGCCGAGTCT GTGGAAGAAG GAATTATGAT TTTGGTATTT TTTTGAATAA AAGAAAGGAA GAAAGTGAAA CCCTCTCCTT
TTCTCCGAAA GGAATGCGGA AAATCCTGAG GGGCTGCAAA ACGACAACCC CCTGCGTTCA AAACGACGAC AACTCCCACC
ACTCCACGAT TGCGGTGTTG AGTTGAGGCA TGTTATTCGC TCACTCCTTC AACTCAAACT CCTACTGTAC TTGTTCTTCT
TCGCATCATC GCATCGAATA GAGACGTTGA CTTTGAAGGA AGAAGAAGAG AATGGAGCAA TCGGTTTTGG ATGACATAAT
CAGTCGTCTC CTCGAAGTTC GTACCCGACC CGGGAAGCAG GTTCAGCTAT CGGAGTCCGA GATCCGTCAA CTCTGCGTCG
TTTCCAGAGA CATTTTCTTG CAACAACCTA ATTTATTGGA GCTCGAAGCG CCTATTAAGA TTTGTGGTCA ATTTCTTTTC
CTTTTCAGCC CTATTTCAAT TTTCTTTTTA CTTCCCTCGC TCTCTCTGTC TAATTTCGTC AAATTCAAAC CTCGAGCACC
GACGATTATT CTTAATTTTG AAGGTTTTGA CATGATCCGA GTGCTTTTAA TTGCATGTTT CGTGGAGTTT TCATAATTCG
CATGTCTACT GACGAGTGTT TTGAACTGGA TTAGTAGGGA TTGCTTGCTT AATGTTTGAA CTGCATGTAC AGATTGTATT
TCAGATAGTG GGAGCCACTT GTTTTTTTTT TCTTTTTTCT TATTTATCTT TCTCTGACTG CACCCGCAGT CAAAATATGG
TCAGTAGAGA ATCCTGATTT GATTGGACTG GTGCTGAAAC GCTTTGTTTT TGTTGAATAT GTGGAATGAG ATTCCCTGCA
GTAGAATTAA AAAGTGTGCG TGAATTCTTG ACGAATCTGT GTGTTGGAGC GAATATATGA AAAGAATCTC GAACATTGAT
GAATCTATGA AGTCAAATAA AATCTGCACA CGTCCTATAT TTGACTGAAG TTTGTCTTTT TTATCTTTCC TTGTCCTTGG
TGAATTTATG TATGGAGGAC ACCGAGAGTT TTTAGAACAT TTCGCCTCAC ATTTCACCCT AATGTGAGCT TTGGGAAGTT
AAGCATGAGT TTGCAGTGAG CATTGGGTAT GCTGCAATTT ACTTCGATAT TTTTAAGGTC TTTTTGGTTT AAAAGAAGTG
GATCAGAGGG ATTTTTTTAA TCATACCTCG TTTGGTTAAA AAAATTGCGG GGCAGGGAAA TTTTGGGACG GATTATATTT
TCCTGCTATT ATAATTTGTT TAGTCTCCGC TCTTTTCATT TATGTGGATA CAACTGTATA TAATCCATAC TTTCCCTCCC
ATTCCATTAG GAAGAATACC AAACCAAACA TGGGGAACTC TCTTATGATT TGAACACGTT GTTAATTAAT TTTCATTAAT
CATTACTTTT CATGATTATT TGGTTAGGGG TTATCTTTTT TACTCTTCCT GAGAAGGTTT TTTCTGGACT GCAATCACTC
ATTTGTAGTG GACAATTATT TCTTGATCGA ACAAAATTTG AATTGAGGGT TGTCTCTTTT GTTTGTATGT ACTTGATGAA
TGAAAGCATA CAAGTGAAAT AATCATGTAA TGAGCTTTGA GAATGTGATC AGTTGTATTG TTTGTTTATT GATTTTATTG
GGTAAAACAA AAACATGGTC AAATTAGAAG GAAAAAGCAT GTGAAATGTC TCCATTAACT TCACTGGACT TGTACGAGCA
GTATATCTCA TGCTGGTTTA GTTGACTTAT ACTGCAATAT CAAATCATGC GATAATTTTT TATGTATCTT GCAGTGATTG
CAAATAAAAT TCATGTTAAT GTATTTATTC CCACACGACA TCAGTGTTTG CTTCTGAATT TGTAGTTATA TTTTAAAGTA
TGTGAGCAGT AAGGATTGAA CTCTATAGAT CACATGGTCA TAGAGGATCT GATGTAATCT TATGAAAAAC TAGTGAAAGC
ACATGAGTTG TTTTATATCC AAATTCAATC AGTCCTTATA GTGGTATATA GACTTTTTTA GTATAATTCA TATTCATATT
CACATATTAC ACATTTATAC TCACTGATGA TGTTAGTCAT GTATGTAATA CTCTATTGCT GTACACACAA AAAACTATGT
TCTTGAAGTT TTATTCATAT CCTTATATTT ATGTTTCAGG TGATGTACAT GGCCAATATT CTGATCTCTT AAGGCTTTTT
GAGTACGGTG GATTACCTCC TGAAGCCAAC TACTTGTTTC TGGGGGATTA TGTGGATCGA GGGAAACAGA GTTTAGAAAC
AATTTGCCTT CTCCTTGCTT ATAAAATAAA ATATCCTGAG AACTTTTTCC TGTTAAGGGG AAACCATGAA TGTGCTTCTA
TAAATCGGAT ATATGGATTT TATGATGAGT GCAAGAGAAG GTTCAATGTA AGGTTATGGA AGACATTTAC AGAGTGCTTC
AATTGCCTGC CCGTGGCAGC CCTTGTTGAT GAAAAGATTT TATGTATGCA CGGAGGACTT TCTCCTGACT TACTTAATTT
GGATCAGATT CGAAATATAC AGCGGCCCAC AGATGTTCCT GATACAGGTT TGCTTTGTGA TCTCCTTTGG TCTGACCCAA
GCAAAGAAGT TCAAGAATGG GGAATGAATG ATAGAGGAGT TTCATATACA TTTGGTGCTG ATAAGGTCTC AGAGTTTCTT
CAGAAACATG ATCTTGATCT TGTTTGTCGT GCACATCAGG TTAAACTTCT GCCTTTGGTA CCCCAGATCT TCTGGATTGA
GTTTGTATAT CCATTTGTAT TTCAATGACT AAAATGACTG AAATTAGCTT CTTTTTCCCC AGCAATTTTA ATCTATCTCT
TAGCATTACT ACAACTACTT AATTTTTTAA ACTGGGAATT ACTTTTTACC TTGTATATGG GACAACTTTA TGTATGAGCC
TAAACTAAAC TGCTTCAACT GCCATGCATT AGCTTTAGCA TCTGATGCTT TGTACTTTAC ATTCCTTTCA TGTTTATATT
CTGGGATAGT AGGTCTCAAT CAACTATGCT ATTTGAAAAT AAATTGTTTT TATTTTCAAC ATTTTCTTAT CAGGTTGTGG
AAGATGGATA CGAGTTCTTT GCTAATCGAC AGCTTGTAAC AATATTTTCA GCACCTAATT ATTGTGGGGA GTTTGACAAT
GCCGGTGCTA TGATGAGTGT TGACGAGACA CTAATGTGCT CTTTCCAAAT ATTAAAGCCA GCTGATAAAA AAACAAAGCA
CAATTTTGGA AGTACTACCA CTGCTAAGCC TGGAAACTCC CCAGCAGGTG TAAAGGTAGG AAGTTTATAG AGTATTGGCT
GACAATGTTT GCATGGCATC AGTAGGTACC CATCTTCTAA TTCTATTGAC GTATAACCCT TTTGTGCAAA TGTAGATATT
TCAGAGTATC AGTCTCTGTA GTGATTTGGC AATTTTTTAC CCACTGGTGG GCTCTTATAT CGTACTGAAA ATTTATTTTT
GAGACTTCAA AAAGTATTAC ATGAAATAGG AATTTGTCAT GATTTTACAA AATTGAAAAG AGGTGGTTGT GCTTGGAAGA
GGTGACTGGC TCGTTGGAGG AGACATTCGC CACTGTCTAG GTTATGTTGT GGTATTTTCT TCATAGAGTT CAATTGGATT
AATTATGTGG GATTTCCATG GATTTAGCCA TTTTCAACAT GATTAGGATA ATTAGAATGA TCTTAATTCA TTTGTTAACC
CTGCTAGGAA GCTATGTTTA GTAGTGAAAA CTAAAATGCT GTAACTAAGT CTTTCTACTA AACTTGCATT ATGCAACCAA
AGGTATTGGA TGTGTCTGTT GTTTCGTATT GTTCCCACCC CAATCAGTTA ATGGGTTCTT TTGCATTTGT TAGTTTGGGC
TTGAGAAAGT GCAAGTTTGC GCTGAATAGC AGAACCATAC CATGTAGGCA GATTTTACCT GCTGTGTGGG TTATGAATCT
TATTGCTTGG ACTTGGAAGC ACCCTATGAG AAGGGTCATG ACATCAGATT ACAAAGTGGG AATCAGTACC GCCCACAAAG
GGTGTGCCCG TGGGGACACT TGGTGTTTGG CCAAAACTAC CTAAACTGTA ATGTCCCTAA TCTGGCACTC AATTCAAGCG
ATGGTATCAC ATTACTTAGC ACGGACACCT GGTGTTTGAC CAAAATTAGC TAAACT

>Vigan.05G134000.01
GGCCGAGTCT GTGGAAGAAG GAATTATGAT TTTGGTATTT TTTTGAATAA AAGAAAGGAA GAAAGTGAAA CCCTCTCCTT
TTCTCCGAAA GGAATGCGGA AAATCCTGAG GGGCTGCAAA ACGACAACCC CCTGCGTTCA AAACGACGAC AACTCCCACC
ACTCCACGAT TGCGGTGTTG AGTTGAGGCA TGTTATTCGC TCACTCCTTC AACTCAAACT CCTACTGTAC TTGTTCTTCT
TCGCATCATC GCATCGAATA GAGACGTTGA CTTTGAAGGA AGAAGAAGAG AATGGAGCAA TCGGTTTTGG ATGACATAAT
CAGTCGTCTC CTCGAAGTTC GTACCCGACC CGGGAAGCAG GTTCAGCTAT CGGAGTCCGA GATCCGTCAA CTCTGCGTCG
TTTCCAGAGA CATTTTCTTG CAACAACCTA ATTTATTGGA GCTCGAAGCG CCTATTAAGA TTTGTGGTGA TGTACATGGC
CAATATTCTG ATCTCTTAAG GCTTTTTGAG TACGGTGGAT TACCTCCTGA AGCCAACTAC TTGTTTCTGG GGGATTATGT
GGATCGAGGG AAACAGAGTT TAGAAACAAT TTGCCTTCTC CTTGCTTATA AAATAAAATA TCCTGAGAAC TTTTTCCTGT
TAAGGGGAAA CCATGAATGT GCTTCTATAA ATCGGATATA TGGATTTTAT GATGAGTGCA AGAGAAGGTT CAATGTAAGG
TTATGGAAGA CATTTACAGA GTGCTTCAAT TGCCTGCCCG TGGCAGCCCT TGTTGATGAA AAGATTTTAT GTATGCACGG
AGGACTTTCT CCTGACTTAC TTAATTTGGA TCAGATTCGA AATATACAGC GGCCCACAGA TGTTCCTGAT ACAGGTTTGC
TTTGTGATCT CCTTTGGTCT GACCCAAGCA AAGAAGTTCA AGAATGGGGA ATGAATGATA GAGGAGTTTC ATATACATTT
GGTGCTGATA AGGTCTCAGA GTTTCTTCAG AAACATGATC TTGATCTTGT TTGTCGTGCA CATCAGGTTG TGGAAGATGG
ATACGAGTTC TTTGCTAATC GACAGCTTGT AACAATATTT TCAGCACCTA ATTATTGTGG GGAGTTTGAC AATGCCGGTG
CTATGATGAG TGTTGACGAG ACACTAATGT GCTCTTTCCA AATATTAAAG CCAGCTGATA AAAAAACAAA GCACAATTTT
GGAAGTACTA CCACTGCTAA GCCTGGAAAC TCCCCAGCAG GTGTAAAGTT TGGGCTTGAG AAAGTGCAAG TTTGCGCTGA
ATAGCAGAAC CATACCATGT AGGCAGATTT TACCTGCTGT GTGGGTTATG AATCTTATTG CTTGGACTTG GAAGCACCCT
ATGAGAAGGG TCATGACATC AGATTACAAA GTGGGAATCA GTACCGCCCA CAAAGGGTGT GCCCGTGGGG ACACTTGGTG
TTTGGCCAAA ACTACCTAAA CTGTAATGTC CCTAATCTGG CACTCAATTC AAGCGATGGT ATCACATTAC TTAGCACGGA
CACCTGGTGT TTGACCAAAA TTAGCTAAAC T

>Vigan.05G134000.01
ATGGAGCAAT CGGTTTTGGA TGACATAATC AGTCGTCTCC TCGAAGTTCG TACCCGACCC GGGAAGCAGG TTCAGCTATC
GGAGTCCGAG ATCCGTCAAC TCTGCGTCGT TTCCAGAGAC ATTTTCTTGC AACAACCTAA TTTATTGGAG CTCGAAGCGC
CTATTAAGAT TTGTGGTGAT GTACATGGCC AATATTCTGA TCTCTTAAGG CTTTTTGAGT ACGGTGGATT ACCTCCTGAA
GCCAACTACT TGTTTCTGGG GGATTATGTG GATCGAGGGA AACAGAGTTT AGAAACAATT TGCCTTCTCC TTGCTTATAA
AATAAAATAT CCTGAGAACT TTTTCCTGTT AAGGGGAAAC CATGAATGTG CTTCTATAAA TCGGATATAT GGATTTTATG
ATGAGTGCAA GAGAAGGTTC AATGTAAGGT TATGGAAGAC ATTTACAGAG TGCTTCAATT GCCTGCCCGT GGCAGCCCTT
GTTGATGAAA AGATTTTATG TATGCACGGA GGACTTTCTC CTGACTTACT TAATTTGGAT CAGATTCGAA ATATACAGCG
GCCCACAGAT GTTCCTGATA CAGGTTTGCT TTGTGATCTC CTTTGGTCTG ACCCAAGCAA AGAAGTTCAA GAATGGGGAA
TGAATGATAG AGGAGTTTCA TATACATTTG GTGCTGATAA GGTCTCAGAG TTTCTTCAGA AACATGATCT TGATCTTGTT
TGTCGTGCAC ATCAGGTTGT GGAAGATGGA TACGAGTTCT TTGCTAATCG ACAGCTTGTA ACAATATTTT CAGCACCTAA
TTATTGTGGG GAGTTTGACA ATGCCGGTGC TATGATGAGT GTTGACGAGA CACTAATGTG CTCTTTCCAA ATATTAAAGC
CAGCTGATAA AAAAACAAAG CACAATTTTG GAAGTACTAC CACTGCTAAG CCTGGAAACT CCCCAGCAGG TGTAAAGTTT
GGGCTTGAGA AAGTGCAAGT TTGCGCTGAA TAG

>Vigan.05G134000.01
MEQSVLDDII SRLLEVRTRP GKQVQLSESE IRQLCVVSRD IFLQQPNLLE LEAPIKICGD VHGQYSDLLR LFEYGGLPPE
ANYLFLGDYV DRGKQSLETI CLLLAYKIKY PENFFLLRGN HECASINRIY GFYDECKRRF NVRLWKTFTE CFNCLPVAAL
VDEKILCMHG GLSPDLLNLD QIRNIQRPTD VPDTGLLCDL LWSDPSKEVQ EWGMNDRGVS YTFGADKVSE FLQKHDLDLV
CRAHQVVEDG YEFFANRQLV TIFSAPNYCG EFDNAGAMMS VDETLMCSFQ ILKPADKKTK HNFGSTTTAK PGNSPAGVKF
GLEKVQVCAE *