GBrowse Details

Vigan.05G114600.01

Basic Information:
Name: Vigan.05G114600.01
Multiple alignment
Variant Information
Position: Chr05:9044702..9049109 (+ strand)
Length: 4408
Functional Information:
Description: Similar to Uncharacterized protein. [I1MGB0, Glycine max]
GO: Molecular Function: RNA binding (GO:0003723)
InterPro: Ribosomal protein S1, RNA-binding domain (IPR003029)
Nucleic acid-binding, OB-fold (IPR012340)
RNA-binding domain, S1 (IPR022967)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.94,12.79,11.63,17.42,10.61,14.29,10.29,9.23
Arabidopsis thaliana homolog: AT5G30510.1
Automatic updates:
Name: NM_001361096 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S1 (LOC100806905), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361100 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 30S ribosomal protein S1 (LOC100810511), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:9044702..9044884 (+ strand)
Length: 183
Type: five_prime_UTR
Position: Chr05:9044885..9045145 (+ strand)
Length: 261
Type: CDS
Position: Chr05:9045851..9046126 (+ strand)
Length: 276
Type: CDS
Position: Chr05:9046376..9046456 (+ strand)
Length: 81
Type: CDS
Position: Chr05:9047420..9047701 (+ strand)
Length: 282
Type: CDS
Position: Chr05:9047785..9047895 (+ strand)
Length: 111
Type: CDS
Position: Chr05:9048179..9048265 (+ strand)
Length: 87
Type: CDS
Position: Chr05:9048733..9048837 (+ strand)
Length: 105
Type: CDS
Position: Chr05:9048838..9049109 (+ strand)
Length: 272
Type: three_prime_UTR

>Vigan.05G114600.01 class=Sequence position=Chr05:9044702..9049109 (+ strand)
GGTATTACAG AGGGAAAGCA AAGGATGTTT GAATAGAGAT TTGTTTAGAA ATTATAACTT TGATCTTTGA AGTTGTAAGT
CTCTGCGCCA TAAAAAAAAG TGAAACAATT ACTTAATTTC CTTTCATTTC GATAATTCAC GCCTTATCTA TCAAACACCA
AGACTGCACT ATACAAAGCT GCCATGCCGA TGGCGATTAC GGCGTCGCAG TTGCGGTGGG GATGGAGGCC GCCGCCGAAG
CATCAACGGC GTCCTATGGC TCCGGTGGTC TGTTCAGTGG CTATAGAGAA CGCGCAGAAG AAAGAGAGAG CGAGACTAAA
AACACTTTTC GAAGAAGCGT ACGAGAGGTG CCGCACTGCT CCCACTGAAG GCGTCTCCTT CAGCCTCCAG CAATTCACGG
ACGCTCTCGA CAAATATGAC TACGAATCCG AAGTTGGCAC TAAGGCACGT TCCTTTCCCT TTACCATCCA AAAATGGTTT
TGAAGTTGTT TGTGGTTGAG AGTGTTTTGT GTTTACGGCA TTTGCTAATT GATTGTGTGT GAAGAAAATG AAAGAGGGGC
GAGAGGTTTT AAAGTGTGGT TGTAGTTGCT GTTTTGTCTC TGTCCATGTG TTGTAGAGAA TTATGGACAA ATGCAGCTGA
TGTGACTAAT TTAGGTTATA TAGTTATTCT TGATTTTATA AAAGATTGTA GAAAATGCAG CTGATGTAGC GCAAGTGGTA
GAGACCCTAA ATATCTAGTA GGGTTGAGGA CTGAATTTTG GATTCTTGGG AGGGGTTTGT AATTGTAGCC TGAATTATAC
TTAAGTCCTA TCTGGATAAA CTTCTTCGTA AGAGATGATT GGATACACGT TTTTATACAT GCAAGAGAGA ACATAAAAAG
GTAAAATGAA CTGAGTTCGC AGAAAATAAT ACCTAACCGG AGAAACTAAA ATTCTTTTTT CCTTACATAT TTTCTTCTTT
AACTAGTGTT TACAAGGAAG TTTATCTTAA TAGGGCCTAG TACATTTTAC ATTTTTTTTC CCTCACATGT TTTCTTTAAT
AAGTGTTTAC AAAGAAGTTA TCTTAATGGG GTGTAGTACA TTTTAGTTTA CCCTTGCATT TTGAGGGTTT TCGAAATGAA
CTAGTGACGG TTGCTGTTTG GTTTTTCAGG TTAAGGGCAC TGTTTTTGCC ACAGATGCGG GTGGAGCTTA TGTTGACATT
ACTGCAAAGT CCACAGCCTA CTTGCCGCTG CAAGAGGCTT GCATTAGCAG AATTAAGAAA GTTGAAGAAG CAGGTATAGT
TCCTGGGTTG AGGGAGGAAT TTATGATCAT TGGTGAGAAT GGAACGGATG ATACATTGAT CCTGAGTTTG AGGTCTATCC
AATATGACCT TGCATGGGAG CGCTGTAGAC AACTGCAGGC TGAAGATGCT GTTGTCAAGG GTAAGGTGGG TTTTGCTAAC
TGAGAAACTT AATTCGGTTA GGATTTGGCT TTTAACTTAT CTGTTTTTTT CAAGTCTTAT TTGTTATGAC ATCGATTTGT
GGAAATCTTT CAAGTAAAAA TTATAGAGTA AAGCATAAGA AAAATTGATC CCGTTACCTT TGAGAATTTG TTTATTTGAT
CGTGGATTGC ATTAACTGTT TCATTTCCCT ATCCATCTCT ATCTTCTGAC TTATGTATAT TGTATGGCTG GCAGGTTGTC
AGTGCAAACA AAGGCGGTCT GGTGGCTCAA GTGGAAGGCC TCAAGGGTTT TGTTCCATTT TCACAGATAT CAGCGGTAAG
CTTCTTTGAC ATTCATGGAC TGGCATGAAT TATATTCAAC TTGTAGCAAA AGCTCAACAT ATTGGCATTA ATGAAAGTAT
AATAAGGGCT TTGGTGGGAG CAAGAATTGA ATATGGTTAA CTTAATTGTA GGTATTTCAA AAGATGTAAA TCTCAAAAGC
ATATTAACAA AAGGTGTATA AATGAGTTGA ACTGCACTGA ACACTTGAAA CTCAGACTTG GCTTGCATAA AAGTACGGTG
CTCAAGCTTG GCTCAGAGTT AAAACTTTGG CTTGACTTGT TAGGAAGTAT AAAGCTTCAG TTTGACTTGT TTAACTCATT
TATAACTGTT CTTTATCAAA TATATTCTTA ATGATTTTCT TAATTTTATC AGTATTGTAT TTAACAGACA TTTTCTTTAC
AAAAAGAAGT AGAAGTAAGA CGTGAAAGAG AGTATTTGAA CATAGAAGTT ATATATAATC ATAATTTTTT TAGATCAATC
ACATTTTATT ATTATTTTAT TTACGTACAC ATGTACATGT ATTCTTGAGC CTTTAATGTC AAGCCTAATT ATTTCAAGGT
AGCTTGACCT ATCCAAGTCG AAAGTCAAAA GCTTGAGTTT GTTTTGCTTG TTATGTGCTT CATCAAACAT TTAACGGGTG
GAGTTTCAAT ATTTCACAAA TAACTCAACT CATTTATATT CCTAAATGAT ATGGAGAATA ACAAAGCCAT AATAGAATAG
TTCTTTGACA AGTATCGATC ACTACTAAAC TTATAAATGT CCAACTTCCA CTAACATCAA TATTGAAATT GTTTGATGCA
ATTTTACTAA CAGTACTTCT ATCCTTCAAT AAATTAATGT AGATTATTTT GGGTAAATAG AAAGTTTCAT GTCATGTTCA
TTCTTCTGTC TTATTGTAAA AAATTACAAT TTCAGCAGCA CACTCAAGCA ATTTCCCTTT TGCCTCTTTT CTCCTTAGAA
ATCAACTGGA GAAGAGCTTC TTGAGCAGGA GATTTCTTTT AAGTTTGTGG AGGTGGATGA GGAACAGTCT AGACTTGTCC
TCAGTCACCG CAAAGCTGTG GCTGAGAGCC AAGGACAGTT AGGAATTGGA TCCGTAGTCA TTGGCTCTGT TCAAAGCATA
AAGCCATACG GTGCCTTCGT TGACATTGGT GGAATCAGTG GCCTCCTTCA TGTCAGTCAG ATCAGTCATG ACCGTATAAC
TGACATTGCG ACTGTTCTTC AACCTGGTGA TATTCTGAAG GTAAACCTAT GATAAGCTAC ACTGTATTTG CTTGGAATCA
CTGCTGTTAT GTGAACATAA AATCTCATTT GTTGTTTGGT TAGGTGATGA TCTTAAGTCA TGATAGGCAG AGAGGACGTG
TAAGTCTTTC CACAAAGAAG TTGGAACCCT CACCTGGTGA CATGATTCGC AACCCAAAGC TTGTCTTTGA GAAGGTATAA
TTCAAAAGAA GTAAATCAAG ATTTTTGCCT GCTAGTTGTA TAAAATAAAT TATGATTGTA GCACTCAAAG TGGCTTCACT
TGTCATGGTT TATTTTAAGT TTTCCACTTC CTGCTTCTCT CCTCTTGATT GATATCGTAG AACAGCCAAA ATACAGGGTT
CCTTTGATTA TGTTATAACT TCTTTCTATC TCTTGCTTTC TGTGACAAAT CTAATCAAAC CTTCTCATCA CATTTGAAAA
AAAGGCACCC TTATAATTCT AAATTTGTTT TTTACAGGCG GAGGAGATGG CTCAGACATT CAGACAGAGA ATCGCACAAG
CAGAAGCTAT GGCTCGTGCT GATATGCTCA GGTTCCAGCC AGAGGTATTT ATTTGTTCAA AATCTCATCT CAATGATTGA
TAGTGAAGGG AGTTCTAGCC TAGTTAGATT GCAGTAGGTA CAGTGACGAA TTAGCATTTT CGCTTTTGTT AAAAAAAGTA
AAGTCACATA CTTCTGCTGA CTATAAGCAT TATAGATTCT GAAATGACTA TTTAAATGGT GTTTTGGTGG TCCTTTTTAG
TGGATGAAAT ACGAAAGTGT TATATGCATT TCAATTCTGA TGATCCTAGT TAGGATACCA GTAGTTTTGA TATTTTGGAG
TTTGGAGTCC TAAATGACTC ATTTTACTGA CTAAAGATAT ATGAATATAT TCTTGCTTCC AACTATTACA AGTTTCATCT
TTGGGTTGGA TATATTTATT TGATCACGTT ATAGCATTCA TGAATACTTA TAGAGATGCA CTGCTTGTTC ATTGGGTGAA
CCTATTTCGT ACCTATCCTT TTTGTTTACA GGGTGGATTA GGTCTCAGCG GTGAGGGAAT CTTAGGACCA CTTTCTTCAG
ACTTGCCTCC AGAGGGAGTG AATCTGAGTG AGGTACCCCT GGCTGAAGAG TCATGATTCT GAACTGAGAG CCTTTTGTTT
TTCTTTTTTA TACCTTGGTC TGAATATTGT TGTAGAAAGA CGAACCTAAT GTAAAGACCG GTTTTGTAGC AACTCATTTT
TGTAGAATAG GCTGTTGTAG AACTCTTCAT TTTCTCTCTA AATTATTTCG AGCTATTGTC GCTGTTATCT TTGATTAGAT
CGAAAATAGT GAAAACCAGT TCAAAAACAA GATTTACATA TTTGTCTCTG ATAACTTCAT CATTACCAAC TGCTACAGGC
CAAGAGTA

>Vigan.05G114600.01
GGTATTACAG AGGGAAAGCA AAGGATGTTT GAATAGAGAT TTGTTTAGAA ATTATAACTT TGATCTTTGA AGTTGTAAGT
CTCTGCGCCA TAAAAAAAAG TGAAACAATT ACTTAATTTC CTTTCATTTC GATAATTCAC GCCTTATCTA TCAAACACCA
AGACTGCACT ATACAAAGCT GCCATGCCGA TGGCGATTAC GGCGTCGCAG TTGCGGTGGG GATGGAGGCC GCCGCCGAAG
CATCAACGGC GTCCTATGGC TCCGGTGGTC TGTTCAGTGG CTATAGAGAA CGCGCAGAAG AAAGAGAGAG CGAGACTAAA
AACACTTTTC GAAGAAGCGT ACGAGAGGTG CCGCACTGCT CCCACTGAAG GCGTCTCCTT CAGCCTCCAG CAATTCACGG
ACGCTCTCGA CAAATATGAC TACGAATCCG AAGTTGGCAC TAAGGTTAAG GGCACTGTTT TTGCCACAGA TGCGGGTGGA
GCTTATGTTG ACATTACTGC AAAGTCCACA GCCTACTTGC CGCTGCAAGA GGCTTGCATT AGCAGAATTA AGAAAGTTGA
AGAAGCAGGT ATAGTTCCTG GGTTGAGGGA GGAATTTATG ATCATTGGTG AGAATGGAAC GGATGATACA TTGATCCTGA
GTTTGAGGTC TATCCAATAT GACCTTGCAT GGGAGCGCTG TAGACAACTG CAGGCTGAAG ATGCTGTTGT CAAGGGTAAG
GTTGTCAGTG CAAACAAAGG CGGTCTGGTG GCTCAAGTGG AAGGCCTCAA GGGTTTTGTT CCATTTTCAC AGATATCAGC
GAAATCAACT GGAGAAGAGC TTCTTGAGCA GGAGATTTCT TTTAAGTTTG TGGAGGTGGA TGAGGAACAG TCTAGACTTG
TCCTCAGTCA CCGCAAAGCT GTGGCTGAGA GCCAAGGACA GTTAGGAATT GGATCCGTAG TCATTGGCTC TGTTCAAAGC
ATAAAGCCAT ACGGTGCCTT CGTTGACATT GGTGGAATCA GTGGCCTCCT TCATGTCAGT CAGATCAGTC ATGACCGTAT
AACTGACATT GCGACTGTTC TTCAACCTGG TGATATTCTG AAGGTGATGA TCTTAAGTCA TGATAGGCAG AGAGGACGTG
TAAGTCTTTC CACAAAGAAG TTGGAACCCT CACCTGGTGA CATGATTCGC AACCCAAAGC TTGTCTTTGA GAAGGCGGAG
GAGATGGCTC AGACATTCAG ACAGAGAATC GCACAAGCAG AAGCTATGGC TCGTGCTGAT ATGCTCAGGT TCCAGCCAGA
GGGTGGATTA GGTCTCAGCG GTGAGGGAAT CTTAGGACCA CTTTCTTCAG ACTTGCCTCC AGAGGGAGTG AATCTGAGTG
AGGTACCCCT GGCTGAAGAG TCATGATTCT GAACTGAGAG CCTTTTGTTT TTCTTTTTTA TACCTTGGTC TGAATATTGT
TGTAGAAAGA CGAACCTAAT GTAAAGACCG GTTTTGTAGC AACTCATTTT TGTAGAATAG GCTGTTGTAG AACTCTTCAT
TTTCTCTCTA AATTATTTCG AGCTATTGTC GCTGTTATCT TTGATTAGAT CGAAAATAGT GAAAACCAGT TCAAAAACAA
GATTTACATA TTTGTCTCTG ATAACTTCAT CATTACCAAC TGCTACAGGC CAAGAGTA

>Vigan.05G114600.01
ATGCCGATGG CGATTACGGC GTCGCAGTTG CGGTGGGGAT GGAGGCCGCC GCCGAAGCAT CAACGGCGTC CTATGGCTCC
GGTGGTCTGT TCAGTGGCTA TAGAGAACGC GCAGAAGAAA GAGAGAGCGA GACTAAAAAC ACTTTTCGAA GAAGCGTACG
AGAGGTGCCG CACTGCTCCC ACTGAAGGCG TCTCCTTCAG CCTCCAGCAA TTCACGGACG CTCTCGACAA ATATGACTAC
GAATCCGAAG TTGGCACTAA GGTTAAGGGC ACTGTTTTTG CCACAGATGC GGGTGGAGCT TATGTTGACA TTACTGCAAA
GTCCACAGCC TACTTGCCGC TGCAAGAGGC TTGCATTAGC AGAATTAAGA AAGTTGAAGA AGCAGGTATA GTTCCTGGGT
TGAGGGAGGA ATTTATGATC ATTGGTGAGA ATGGAACGGA TGATACATTG ATCCTGAGTT TGAGGTCTAT CCAATATGAC
CTTGCATGGG AGCGCTGTAG ACAACTGCAG GCTGAAGATG CTGTTGTCAA GGGTAAGGTT GTCAGTGCAA ACAAAGGCGG
TCTGGTGGCT CAAGTGGAAG GCCTCAAGGG TTTTGTTCCA TTTTCACAGA TATCAGCGAA ATCAACTGGA GAAGAGCTTC
TTGAGCAGGA GATTTCTTTT AAGTTTGTGG AGGTGGATGA GGAACAGTCT AGACTTGTCC TCAGTCACCG CAAAGCTGTG
GCTGAGAGCC AAGGACAGTT AGGAATTGGA TCCGTAGTCA TTGGCTCTGT TCAAAGCATA AAGCCATACG GTGCCTTCGT
TGACATTGGT GGAATCAGTG GCCTCCTTCA TGTCAGTCAG ATCAGTCATG ACCGTATAAC TGACATTGCG ACTGTTCTTC
AACCTGGTGA TATTCTGAAG GTGATGATCT TAAGTCATGA TAGGCAGAGA GGACGTGTAA GTCTTTCCAC AAAGAAGTTG
GAACCCTCAC CTGGTGACAT GATTCGCAAC CCAAAGCTTG TCTTTGAGAA GGCGGAGGAG ATGGCTCAGA CATTCAGACA
GAGAATCGCA CAAGCAGAAG CTATGGCTCG TGCTGATATG CTCAGGTTCC AGCCAGAGGG TGGATTAGGT CTCAGCGGTG
AGGGAATCTT AGGACCACTT TCTTCAGACT TGCCTCCAGA GGGAGTGAAT CTGAGTGAGG TACCCCTGGC TGAAGAGTCA
TGA

>Vigan.05G114600.01
MPMAITASQL RWGWRPPPKH QRRPMAPVVC SVAIENAQKK ERARLKTLFE EAYERCRTAP TEGVSFSLQQ FTDALDKYDY
ESEVGTKVKG TVFATDAGGA YVDITAKSTA YLPLQEACIS RIKKVEEAGI VPGLREEFMI IGENGTDDTL ILSLRSIQYD
LAWERCRQLQ AEDAVVKGKV VSANKGGLVA QVEGLKGFVP FSQISAKSTG EELLEQEISF KFVEVDEEQS RLVLSHRKAV
AESQGQLGIG SVVIGSVQSI KPYGAFVDIG GISGLLHVSQ ISHDRITDIA TVLQPGDILK VMILSHDRQR GRVSLSTKKL
EPSPGDMIRN PKLVFEKAEE MAQTFRQRIA QAEAMARADM LRFQPEGGLG LSGEGILGPL SSDLPPEGVN LSEVPLAEES
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