VIGGS:GBrowse

Vigan.05G106000.01

Basic Information:

Name:	Vigan.05G106000.01 Multiple alignment Variant Information
Position:	Chr05:8166607..8169312 (+ strand)
Length:	2706

Functional Information:

Description:	Similar to Uncharacterized protein. [O22443, Glycine max]
GO:	Biological Process: response to oxidative stress (GO:0006979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: peroxidase activity (GO:0004601)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Plant peroxidase (IPR000823)
	Haem peroxidase, plant/fungal/bacterial (IPR002016)
	Haem peroxidase (IPR010255)
	Peroxidases heam-ligand binding site (IPR019793)
	Peroxidase, active site (IPR019794)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.00,1.30,0.57,10.59,3.02,44.29,0.25

Automatic updates:

Name:	BT096874 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-21E4 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251386 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max peroxidase (Ep), mRNA.
PubMed ID:	28644760 NCBI(pubmed)
	27292084 NCBI(pubmed)
	9418041 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr05:8166607..8166683 (+ strand)
Length:	77
Type:	five_prime_UTR

Position:	Chr05:8166684..8166902 (+ strand)
Length:	219
Type:	CDS

Position:	Chr05:8167189..8167380 (+ strand)
Length:	192
Type:	CDS

Position:	Chr05:8168417..8168582 (+ strand)
Length:	166
Type:	CDS

Position:	Chr05:8168688..8169166 (+ strand)
Length:	479
Type:	CDS

Position:	Chr05:8169167..8169312 (+ strand)
Length:	146
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.05G106000.01 class=Sequence position=Chr05:8166607..8169312 (+ strand)
ATCCACCCAA TTCATCTCAT CTATAAATAA AGGATCAATG TGAGAGCATA ATAACTTGAG ATTCAAGAAC AGTCAAAATG
GGTTCCATGC GTGTAGTACT AGTGGCAGTG TTGTGTTCAT TTGCTTTGCA TGCAGGGTTT TCTGTAACTA ATGCTCAGCT
TAGTCCTACG TTCTACAGAA CAACATGTCC AAATATATTC AATATTGTGT TTCAAGTCAT CTTTCAAGCT TCCACCACCG
ATCCCCGAAT TGGGGCCAGC CTTCTCAGGC TTCATTTTCA TGATTGCTTT GTTCAAGTAC GTACTTGTTT TTTCAGAACA
CTTATCATTG TTTTTGACTC TTCTTTTGTT GTCCAAGCCA CTGTGTTTGT TAATTACTAA AAATGTTTTT TTTTGAGAAC
CTTATTGGTT TGAAAAATAA TCAGAGGAGA TAAAGAAAGT ACAACATTTC GTGTTTTTTT ATCATGAGTA CAGGATATAG
ATATTCTGTC AGAAAAGAGA AATCTCAATA ATGACAATAA AAAGCTATGG TCGATATCTA GGGTTAAGGT GAGAAATGAT
GAAGCTGTTA TATTCTTGAC AGGGTTGTGA TGCATCAGTT TTGTTGAACA ACACTGCTAC CATAGAAAGC GAGCAAGATG
CAATTCCAAA TAACAATTCA ATAAGGGGCT TGGACGTAGT CAATAACATC AAGACAGCGG TGGAAAATAG TTGTCCAGGG
ACAGTTTCTT GTGCTGATAT TCTTGCCATT GCAGCTGAAG TAGGTTCTGT TCTGGTAAGT CCAAATTCCC AATCATTTAC
TTAACATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATAGT GTCATCAATA ATGCCCTAAT
TAGGGCCAAT TAGATCAAAA AACAAAATTA CAGTTTATTA AAGACTTAAA ATATGGCAGG GACTAAAAAT TACATGGTAT
TGGGATTTAA TTATATAACA AAAAATTCTG AAATATATAT ATAATTACAA TTCAATCTCA ACCCTTTGTA TCAGAGCTAC
TACGTCAGAA TTCATATCAT TGGAAGATCT CAATCCTCCA TAAGTATTAA GGGATGGAAT CGGTATTATG TTTAATTTTA
ATGCTCTTGT AGCCACCAAA AATTTGTCTT ATTGTGATCA ATTAGTAATC ATGTTCGGGA AATTGTCTTT GGGTTTTAGA
AAAAAAGCAA GACAAGGAAG ATTTGCAAGA GTTGTAGGTT ATTCTGTATG ATAATTAACT GGCGTAATTA AAGACTTGAT
TGGAAAAAAA TATGGCGTAA TTAAGATTAA ACCTATTCGA GGGTAGGTAG TTGAAAGGGC ATAGTTTTTA ATACCATAAT
TTTAAGCGAC TCGCTATTAA TCATATAAAG TAATGGATGC AAACCGTGTT GAAATTTGCC TCCAAGATGT ATAAAATTCC
TCTCAAGTAA CATACCCAAA AAATCAGGTA TTTAGGTATT TATTTATAAA GACAATTTGT CATGACGTTG AACTGTAGTA
TACGGCAAAA ATGATTTTGA TAATACCTCT CACCATTAAA GGCCATAATT TAAGTATGTG TTGCATGTGC GACGTGGATG
TTTCGTGTAA AATGCTAATT ACGCAAAGCT GTTTTTTTCT TCTTTCAGAA ATCTGTAAAG GAAAACAACA TATATATTTG
ACTTTTGTTA AATAATTAAT GACTAACCTT CCACAAAATA TTAGTGCAAT ATCTAAAAAA TATAAAATAT GAAATATGGT
AAAAGGGTTT ATAATATATC TATTAAAGCC TTCTAATTTA TCTATTTCAG GGAGGAGGTC CAGGATGGCC AGTTCTATTA
GGAAGAAGAG ATAGTTTAAC AGCAAACAGA ACCCTTGCAA ATCAAAACCT TCCTGCTCCT TTCTTCAACC TCACTCAACT
TAAAGCAGCA TTTGCTGTTC AAGGTCTCAA CACCACTGAT TTAGTTGCAC TCTCAGGTAT ACACATAAAA ATATTAACAT
CAAGTTCATG AGTTTCTTAA GTTTTGTTTA TAATTTCTTA AAAAGTGAAG GCTATCAATA AGTTTTTTGA AACTGATTCA
GGTGGTCATA CGTTTGGAAG AGCTCACTGC AGCACATTCA ACAACCGATT ATACAACTTC AACAACACTG GAAACCCTGA
TCCAACTCTG AATACAACTT ACTTAGCAAC ACTGCGTCTG ATATGCCCCC AGAACGACAC TGGGAATAAC CTCACCAATT
TGGACCTGAC CACACCTGAT CAATTTGATA ACAAATACTA CTCCAATCTA CAGCACCTCA ATGGCTTACT TCAGAGCGAC
CAGGAACTCT TCTCTACTCC TGGTGCTGAT ACCATTCCCA TTGTCAACAG TTTCAGCAGT AACCAAAATG CTTTCTTTGC
CAACTTCGTA GCGTCAATGA TAAAAATGGG AAATATTGGA GTGCTGACAG GAACTGATGG AGAAATTCGC ACCCAATGCA
ATTTTGTGAA TGGAAACTCG TTTGGATTAG CTAGTATGGC GTCCAAAGAT CCTAAGGAAA AGAGGGTTTC TCAATATTAA
TAAGTTAATG GAAAGTGTCA GCTGTAAAAG GCAAATTGGA GGTTGTAAAC CTCTTTGCTA TAATATTGAA ATAAACCACA
GAAATGTGCA TGCAGACGTG ATTTTGCTAT GCACCTGTTA TGTGTTTACT TTGAATCTTA TTATTG

[show][hide][copy]TRANSCRIPT

>Vigan.05G106000.01
ATCCACCCAA TTCATCTCAT CTATAAATAA AGGATCAATG TGAGAGCATA ATAACTTGAG ATTCAAGAAC AGTCAAAATG
GGTTCCATGC GTGTAGTACT AGTGGCAGTG TTGTGTTCAT TTGCTTTGCA TGCAGGGTTT TCTGTAACTA ATGCTCAGCT
TAGTCCTACG TTCTACAGAA CAACATGTCC AAATATATTC AATATTGTGT TTCAAGTCAT CTTTCAAGCT TCCACCACCG
ATCCCCGAAT TGGGGCCAGC CTTCTCAGGC TTCATTTTCA TGATTGCTTT GTTCAAGGTT GTGATGCATC AGTTTTGTTG
AACAACACTG CTACCATAGA AAGCGAGCAA GATGCAATTC CAAATAACAA TTCAATAAGG GGCTTGGACG TAGTCAATAA
CATCAAGACA GCGGTGGAAA ATAGTTGTCC AGGGACAGTT TCTTGTGCTG ATATTCTTGC CATTGCAGCT GAAGTAGGTT
CTGTTCTGGG AGGAGGTCCA GGATGGCCAG TTCTATTAGG AAGAAGAGAT AGTTTAACAG CAAACAGAAC CCTTGCAAAT
CAAAACCTTC CTGCTCCTTT CTTCAACCTC ACTCAACTTA AAGCAGCATT TGCTGTTCAA GGTCTCAACA CCACTGATTT
AGTTGCACTC TCAGGTGGTC ATACGTTTGG AAGAGCTCAC TGCAGCACAT TCAACAACCG ATTATACAAC TTCAACAACA
CTGGAAACCC TGATCCAACT CTGAATACAA CTTACTTAGC AACACTGCGT CTGATATGCC CCCAGAACGA CACTGGGAAT
AACCTCACCA ATTTGGACCT GACCACACCT GATCAATTTG ATAACAAATA CTACTCCAAT CTACAGCACC TCAATGGCTT
ACTTCAGAGC GACCAGGAAC TCTTCTCTAC TCCTGGTGCT GATACCATTC CCATTGTCAA CAGTTTCAGC AGTAACCAAA
ATGCTTTCTT TGCCAACTTC GTAGCGTCAA TGATAAAAAT GGGAAATATT GGAGTGCTGA CAGGAACTGA TGGAGAAATT
CGCACCCAAT GCAATTTTGT GAATGGAAAC TCGTTTGGAT TAGCTAGTAT GGCGTCCAAA GATCCTAAGG AAAAGAGGGT
TTCTCAATAT TAATAAGTTA ATGGAAAGTG TCAGCTGTAA AAGGCAAATT GGAGGTTGTA AACCTCTTTG CTATAATATT
GAAATAAACC ACAGAAATGT GCATGCAGAC GTGATTTTGC TATGCACCTG TTATGTGTTT ACTTTGAATC TTATTATTG

[show][hide][copy]CDS

>Vigan.05G106000.01
ATGGGTTCCA TGCGTGTAGT ACTAGTGGCA GTGTTGTGTT CATTTGCTTT GCATGCAGGG TTTTCTGTAA CTAATGCTCA
GCTTAGTCCT ACGTTCTACA GAACAACATG TCCAAATATA TTCAATATTG TGTTTCAAGT CATCTTTCAA GCTTCCACCA
CCGATCCCCG AATTGGGGCC AGCCTTCTCA GGCTTCATTT TCATGATTGC TTTGTTCAAG GTTGTGATGC ATCAGTTTTG
TTGAACAACA CTGCTACCAT AGAAAGCGAG CAAGATGCAA TTCCAAATAA CAATTCAATA AGGGGCTTGG ACGTAGTCAA
TAACATCAAG ACAGCGGTGG AAAATAGTTG TCCAGGGACA GTTTCTTGTG CTGATATTCT TGCCATTGCA GCTGAAGTAG
GTTCTGTTCT GGGAGGAGGT CCAGGATGGC CAGTTCTATT AGGAAGAAGA GATAGTTTAA CAGCAAACAG AACCCTTGCA
AATCAAAACC TTCCTGCTCC TTTCTTCAAC CTCACTCAAC TTAAAGCAGC ATTTGCTGTT CAAGGTCTCA ACACCACTGA
TTTAGTTGCA CTCTCAGGTG GTCATACGTT TGGAAGAGCT CACTGCAGCA CATTCAACAA CCGATTATAC AACTTCAACA
ACACTGGAAA CCCTGATCCA ACTCTGAATA CAACTTACTT AGCAACACTG CGTCTGATAT GCCCCCAGAA CGACACTGGG
AATAACCTCA CCAATTTGGA CCTGACCACA CCTGATCAAT TTGATAACAA ATACTACTCC AATCTACAGC ACCTCAATGG
CTTACTTCAG AGCGACCAGG AACTCTTCTC TACTCCTGGT GCTGATACCA TTCCCATTGT CAACAGTTTC AGCAGTAACC
AAAATGCTTT CTTTGCCAAC TTCGTAGCGT CAATGATAAA AATGGGAAAT ATTGGAGTGC TGACAGGAAC TGATGGAGAA
ATTCGCACCC AATGCAATTT TGTGAATGGA AACTCGTTTG GATTAGCTAG TATGGCGTCC AAAGATCCTA AGGAAAAGAG
GGTTTCTCAA TATTAA

[show][hide][copy]PROTEIN

>Vigan.05G106000.01
MGSMRVVLVA VLCSFALHAG FSVTNAQLSP TFYRTTCPNI FNIVFQVIFQ ASTTDPRIGA SLLRLHFHDC FVQGCDASVL
LNNTATIESE QDAIPNNNSI RGLDVVNNIK TAVENSCPGT VSCADILAIA AEVGSVLGGG PGWPVLLGRR DSLTANRTLA
NQNLPAPFFN LTQLKAAFAV QGLNTTDLVA LSGGHTFGRA HCSTFNNRLY NFNNTGNPDP TLNTTYLATL RLICPQNDTG
NNLTNLDLTT PDQFDNKYYS NLQHLNGLLQ SDQELFSTPG ADTIPIVNSF SSNQNAFFAN FVASMIKMGN IGVLTGTDGE
IRTQCNFVNG NSFGLASMAS KDPKEKRVSQ Y*