GBrowse Details

Vigan.05G084900.01

Basic Information:
Name: Vigan.05G084900.01
Multiple alignment
Variant Information
Position: Chr05:6469695..6472965 (+ strand)
Length: 3271
Functional Information:
Description: Similar to Uncharacterized protein. [I1KZU3, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Mpv17/PMP22 (IPR007248)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:61.04,21.07,14.82,47.14,22.53,39.61,119.42,16.27
Arabidopsis thaliana homolog: AT4G04470.1
Automatic updates:
Name: NM_001250875 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499909 (LOC100499909), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:6469695..6469814 (+ strand)
Length: 120
Type: five_prime_UTR
Position: Chr05:6469815..6469886 (+ strand)
Length: 72
Type: CDS
Position: Chr05:6469984..6470082 (+ strand)
Length: 99
Type: CDS
Position: Chr05:6471545..6471646 (+ strand)
Length: 102
Type: CDS
Position: Chr05:6471955..6472030 (+ strand)
Length: 76
Type: CDS
Position: Chr05:6472292..6472362 (+ strand)
Length: 71
Type: CDS
Position: Chr05:6472465..6472550 (+ strand)
Length: 86
Type: CDS
Position: Chr05:6472666..6472717 (+ strand)
Length: 52
Type: CDS
Position: Chr05:6472718..6472965 (+ strand)
Length: 248
Type: three_prime_UTR

>Vigan.05G084900.01 class=Sequence position=Chr05:6469695..6472965 (+ strand)
TAAGAACATG GTGAATGTCT TGTCTCCAAG ATATTTTGGG GCAACAACCA TAATAGATAC ACAGAAAAGT GACGGACCCA
GACGCAGTTA GCTGCTATTC AGTCAAAGGG TGGGAGCAAG ATGGGTTCTT TGGCAAAGAA GGGTCTCAAC AATTACGTCA
AACAGCTCCA AGAAAACCCT TTGAGAACAA AGGTACCTCT TCTGCGCCTG CATCAATCTC ACTTTCAATT TTTGTAATTT
TTTATTTTCA ATCCATTTTC GTTGACTTAT TCATTGGGGG TCAAATTAGG TAATCACTGC AGGTGTAGTA TCAGCGATTA
GCGATATTGT GTCTCAGAAA CTTTCTGGGA TACAGAAACT TCAACTGAAA CGTCTTCTTC TCAAAGTCGT GAGTTCCTTT
TTCTTTCTCA TTTAGTTTAA TCTTGTTCTA CCAAATCCTA AGTGGTATCG TAACCTGATT CTGATATGAG TAAATTGCAG
TCCACTTGAG TGATGACGCT TAAATTTCCC TCCCTTGAAA GATTAATATG TGCTATATTT TGGGGTTAAT TTGCTCTTTT
TTTATGGCTG TTGTATTATT GGCAATTGGG TTTGAATATC TACCAAATTT CAGTGTTGAC TTGACAAGTG TTCAGAATAT
CGTTGCATCT GTTAAGTATG CTAATTGAAT GCTATCGGTG GTTCAAATTA GTTGTAACTT ATAAGTGATC TTAAAGTTCA
AAAGAAAAGA ACACAGTCTT ACCAGGTTTT TGCGGTGTTA ACAGACTCAT ATACATTGAA ATAAAGACGT AATTGCATAT
TCTTGCCGCC AACTATTGTA ATTTTGTGGT TTTAATCCTT AAACAAACGG CTGTCATTAT CACATGAACT GTTTCCAATT
AGCAGAGGCT TTAAAATCAC AGAAATTGAG ATATACAGTA GATCTAATTG ACACATTTGG AACTCAAAGA TTAAAATTGC
ACATTGGGGA TACCGAAAGG GCTCGGTGGA CACAATTGAA GTATCGAGAA CTAAAATCGC ACAAATTTCG TATCAGAGGA
AACAAAAATA TTAAAAAGTC TAAAACAAAC TAAAGTGTGT GCACGTTGAT ATCTGTGGAA AGGGGAGTAT AATTTTTAAA
TAAAAGGAGA AGAATATATG ATTTAAGTGC CGGACTATTT CGGATTTACT TTTTGGGGGT TGGTGTGATA GAAAATCTGT
AACAAAAGCT GTTTTTAAAA ATGTTGGAAT GAGGGTTTTT TTTTTTTTTT TTGGGATAGC ATCATTGTAT GAATATGACA
ACTAGCTTGA CAATTCATAC CTCAACAATC AAATGCTTCC TAAGGATATT TATTGAAAGA AAAACAAAAC TGTAAAAGAA
AATATAAGGG ACCAAACCAA AATCCTATGC AATCAAGAAA ATCTATATTC AGGTCAGCCA AACCTATTCC TAAAAAAGTT
TTATGTAATA CTAGAAGGCA AACTATTAAA CCAATGAAAA TCCTATTTCA TATCCACCTC AAGTTAGCTA AACTATCCAC
ACATTTATTT TCTTCTCTAA ATATGTGGAA AACTTTAAAA TTCAAGCATT TACTTATGGC AATGTTTCGA ATCCATCTAC
CATAATAACA ACAAGGAACA ATATTTACTT ATGAAATGAG TCTTTTAGTT ATTAACATGT TGCTGCTCAT CTTGATGAAC
TATGCCATGC CCAAATAGAT AGACGAAGTA GCAGCAAGTG GGCTTCTTTC TTAAACCTGT ATGTCTTAAT TTAGTTACTA
CTACTACTAC AGTTATGAGT GACTTTCGCC TTTTCTAGTT ATATACTTAT ATTTAAGCAT TGGGAATTAT ATATCGTTTA
TTGCATGCAG CTTTTTGGAG CCGGGTATAT TGGACCCTTT GGACACTTTT TTCATTTAAT ACTGGACAAA ATATTCAAAG
GAAAGAGAGA TACAAAAACT GTGGCCAAGA AGGTAAAACC GCAAATCCTT CTGTTCTAAG TTTTCACTAT ATCTATCAGG
ACCTGAATTC AGGCATTGCA GTTGGTACCA TGTCCTCAGT CTGCTTTTCT TACAGTTTTT GCTGCATTAA ATATCTGCTG
ACTTAAAATG CTATAATGAA TTGAATCTTA AAAGAAATTT CTGATCATAT TTATTCCAGA ATTTATTTGT AATTAAATGG
ATGGGTTTTT TATACCACCT TTCTTAACCC AAATGATAGA AAAGTTTAAG TTATCCTTTT CTGTAATTAA TTCTTCTTTC
ATCGATCTTT TTGTTTTCAG GTTCTGATTG AACAGTGTAC ATCTTCTCCT TTGAACAATC TGCTTTTCAT GATTTACTAC
GGATTAGTTG TTGAAGGTTA GTCATTTTTC AACATATAAC TTCTTTATTC ACATTGAAGA AACATGGAGT ACTCCAAGTA
AGATACAGTT GGAAAGCAGG CAAAAAGAAT ATCTCTCATC AATGTGAAAA ACAAGATTTC CAACTCTGAC ATCCCCTGCT
ACTGTTTGTT TACTTATTAA AAAAAATGAG GCTGTCCTAA AAGTGATGTA CGAAATGAAT GGTATACTTG GTTGGTGAAT
TGTGTGCTTA TGTTTATGAT GGAAAATTGG ATTTCAGGCC AACCTTGGGT GAATGTGAAA GCTAAAGTTA GGAAGGATTA
TCCATCAGTG CAGTACACTG CTTGGACGGT AATATTTCTA TTTCAAGTGT AGAAAATGAC AGAATTTAAT GAAAGATCAA
TTTTTTTGTT TTTAATTTTA ACATTATAAC TCCCTTGACT TGAACCACAG ATCTCGCCAA TTGTGGGGTG GATAAATCAT
AAATTCTTGC CTCTTCATTT CCGTGTTGTT TTCCACAGCG TAGCAGCATT TTTCTGGTAC GTGTATTTTG TTTTCCTTTC
CTCTGATTTC CTTGACTTGT TAATGATTGT TCCCATTTTT GCTATAACAG CATGTAAATT GAGATAATTG ATTGTGTGCA
TTTTATTTTA GGTCAATATT CTTAAATCTT CGTGCACGAT CTCTGGCGTT GACTAAAGCC TGAAGCAAAG AAGAGTACTG
ATCATAGTCT TTGAAGTAGA TGCTACTGTT TGTTGGGAGA CTGTTAATCT TTCCAGAGCG GAATATAGAA GTTTAGAATA
TAGATGCTTT TGGACAAGGG TTGATTGATT TGGTTTTCAA CTGAACTGAT TGTGGTTAAG ATTGATTTTA AAGTTGTGTG
ATTTATGTTT GAATGTTTTC ATTATGAAAA CAAGTTAGTA ATAAAAATTG GTATAAATTT GTTATTCAAT G

>Vigan.05G084900.01
TAAGAACATG GTGAATGTCT TGTCTCCAAG ATATTTTGGG GCAACAACCA TAATAGATAC ACAGAAAAGT GACGGACCCA
GACGCAGTTA GCTGCTATTC AGTCAAAGGG TGGGAGCAAG ATGGGTTCTT TGGCAAAGAA GGGTCTCAAC AATTACGTCA
AACAGCTCCA AGAAAACCCT TTGAGAACAA AGGTAATCAC TGCAGGTGTA GTATCAGCGA TTAGCGATAT TGTGTCTCAG
AAACTTTCTG GGATACAGAA ACTTCAACTG AAACGTCTTC TTCTCAAAGT CCTTTTTGGA GCCGGGTATA TTGGACCCTT
TGGACACTTT TTTCATTTAA TACTGGACAA AATATTCAAA GGAAAGAGAG ATACAAAAAC TGTGGCCAAG AAGGTTCTGA
TTGAACAGTG TACATCTTCT CCTTTGAACA ATCTGCTTTT CATGATTTAC TACGGATTAG TTGTTGAAGG CCAACCTTGG
GTGAATGTGA AAGCTAAAGT TAGGAAGGAT TATCCATCAG TGCAGTACAC TGCTTGGACG ATCTCGCCAA TTGTGGGGTG
GATAAATCAT AAATTCTTGC CTCTTCATTT CCGTGTTGTT TTCCACAGCG TAGCAGCATT TTTCTGGTCA ATATTCTTAA
ATCTTCGTGC ACGATCTCTG GCGTTGACTA AAGCCTGAAG CAAAGAAGAG TACTGATCAT AGTCTTTGAA GTAGATGCTA
CTGTTTGTTG GGAGACTGTT AATCTTTCCA GAGCGGAATA TAGAAGTTTA GAATATAGAT GCTTTTGGAC AAGGGTTGAT
TGATTTGGTT TTCAACTGAA CTGATTGTGG TTAAGATTGA TTTTAAAGTT GTGTGATTTA TGTTTGAATG TTTTCATTAT
GAAAACAAGT TAGTAATAAA AATTGGTATA AATTTGTTAT TCAATG

>Vigan.05G084900.01
ATGGGTTCTT TGGCAAAGAA GGGTCTCAAC AATTACGTCA AACAGCTCCA AGAAAACCCT TTGAGAACAA AGGTAATCAC
TGCAGGTGTA GTATCAGCGA TTAGCGATAT TGTGTCTCAG AAACTTTCTG GGATACAGAA ACTTCAACTG AAACGTCTTC
TTCTCAAAGT CCTTTTTGGA GCCGGGTATA TTGGACCCTT TGGACACTTT TTTCATTTAA TACTGGACAA AATATTCAAA
GGAAAGAGAG ATACAAAAAC TGTGGCCAAG AAGGTTCTGA TTGAACAGTG TACATCTTCT CCTTTGAACA ATCTGCTTTT
CATGATTTAC TACGGATTAG TTGTTGAAGG CCAACCTTGG GTGAATGTGA AAGCTAAAGT TAGGAAGGAT TATCCATCAG
TGCAGTACAC TGCTTGGACG ATCTCGCCAA TTGTGGGGTG GATAAATCAT AAATTCTTGC CTCTTCATTT CCGTGTTGTT
TTCCACAGCG TAGCAGCATT TTTCTGGTCA ATATTCTTAA ATCTTCGTGC ACGATCTCTG GCGTTGACTA AAGCCTGA

>Vigan.05G084900.01
MGSLAKKGLN NYVKQLQENP LRTKVITAGV VSAISDIVSQ KLSGIQKLQL KRLLLKVLFG AGYIGPFGHF FHLILDKIFK
GKRDTKTVAK KVLIEQCTSS PLNNLLFMIY YGLVVEGQPW VNVKAKVRKD YPSVQYTAWT ISPIVGWINH KFLPLHFRVV
FHSVAAFFWS IFLNLRARSL ALTKA*