VIGGS:Variant information

Chr05:6469695 - 6472965

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6470101	C	T	57	2285.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|4612\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6470247	G	A	68	2593.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|4466\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6470513	T	C	55	2217.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|4200\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6470719	A	T	60	2376.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3994\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6470779	G	A	40	1570.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3934\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6470875	T	A	43	1706.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3838\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471055	A	C	54	2105.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3658\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471113	C	G	49	2072.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3600\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471359	G	A	53	2000.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3354\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471423	T	G	47	1955.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3290\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471559	G	T	53	2037.77	1.00	SYNONYMOUS_CODING(SILENT\|ggG/ggT\|G62\|None\|Vigan.05G084900.01), UPSTREAM(\|3154\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471679	C	A	48	1940.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3034\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471817	G	A	55	2291.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2896\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471871	A	G	54	2360.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2842\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471883	C	A	56	2397.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2830\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472056	T	G	56	2196.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2657\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472127	C	T	54	2097.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2586\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472190	A	G	62	2493.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2523\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472420	T	A	58	2281.77	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2293\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472728	A	T	74	2748.77	1.00	UPSTREAM(\|1985\|\|None\|Vigan.05G085000.01), UTR_3_PRIME(\|11\|\|None\|Vigan.05G084900.01)	Vigna nepalensis
6472821	C	T	51	2036.77	1.00	UPSTREAM(\|1892\|\|None\|Vigan.05G085000.01), UTR_3_PRIME(\|104\|\|None\|Vigan.05G084900.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
6470461	TCATATACATTGAAATAAAGACGTAATTG	T	59	2610.73	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|4251\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6471007	ATGCTTCCTAAGGATATTTAT	A	47	2069.73	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|3705\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472611	T	TTCCC	51	2380.73	1.00	INTRON(\|\|\|None\|Vigan.05G084900.01), UPSTREAM(\|2101\|\|None\|Vigan.05G085000.01)	Vigna nepalensis
6472716	GA	G	74	2710.73	1.00	FRAME_SHIFT(\|tga/\|186\|None\|Vigan.05G084900.01), STOP_LOST(\|tga/\|186\|None\|Vigan.05G084900.01), UPSTREAM(\|1996\|\|None\|Vigan.05G085000.01)	Vigna nepalensis