GBrowse Details

Vigan.05G058700.01

Basic Information:
Name: Vigan.05G058700.01
Multiple alignment
Variant Information
Position: Chr05:4207640..4210197 (+ strand)
Length: 2558
Functional Information:
Description: Similar to Uncharacterized protein. [I1MEW7, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:85.74,66.42,37.30,14.20,0.22,22.93,0.39,14.41
Automatic updates:
Name: NM_001255076 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin NIP1-8 (NIP1-8), mRNA.
PubMed ID: 23771580 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr05:4207640..4207872 (+ strand)
Length: 233
Type: five_prime_UTR
Position: Chr05:4207873..4207998 (+ strand)
Length: 126
Type: CDS
Position: Chr05:4208337..4208561 (+ strand)
Length: 225
Type: CDS
Position: Chr05:4209057..4209254 (+ strand)
Length: 198
Type: CDS
Position: Chr05:4209574..4209635 (+ strand)
Length: 62
Type: CDS
Position: Chr05:4209728..4209938 (+ strand)
Length: 211
Type: CDS
Position: Chr05:4209939..4210197 (+ strand)
Length: 259
Type: three_prime_UTR

>Vigan.05G058700.01 class=Sequence position=Chr05:4207640..4210197 (+ strand)
AATCAGAATT TTAAAAGACG TATGTACCGA GGAAATACAT TAAAAGTGGT TGTTTTGGTC AAACCTCTCG TGGAAAAAAT
GGTATAAGTT TAGTCTTTGA ATCCCAGGCT TTTTGGTGCC CATAAATTGG AGTTGGCTGC TTCTCTTCTC CATCACTTTT
TGGCCTATGA GGCAAAGCTA GTTTATCACC AATACACCCT TTTCGTTCTT TCTCTTAGCT TTATCCAAAG ACCATGTCGG
TGGTGGCTGA TAATTCCGCA AACGGTGGAA ACCACCAGGT TGTTTTAAAT GTGAACGGCG AAACCCCCAA AAAGTGTGAT
CCCTCGACCA ACCAAGACTG TGTTCCTCTC TTGCAGAAGG TGTTTATCCC TCCTAATCCT TTCTTTTCCA TTCAATTTAC
CACAAACAAC CCATATGGAT TTCTCTATCT AATTCTCACT ACAAAGTATT AGTCACTGAA TGTAGTGACG AAAATTGCCT
TTTTTTTTTT GACAAATTTC TTAAAATTTA CATGTAAATT ACTTCCCGAC TAAAGTTTTT TTTCTGTAGT AATTATAGGA
TGGCGTTTCA CTTTTTTATT TTTCTTTAAC TGGCTGGTTT TAGAAACCCT GAAGCTTACT GGATTCAAAA CATTTGGAAT
AAATATGTTG AGCTGGACAT TGATTATGAT TTGGTTGCAT GTGTTTAATA AGTACAGTTG GTGGCAGAGG TGGTGGGAAC
GTACTTTTTG ATATTTGCAG GGTGTGCTTC GGTGGTGGTG AACCTTGACA AGGACAGAGT GATAACACAA CCAGGGATTT
CAATTGTTTG GGGACTCACT GTTATGGTTT TGGTTTACTC TGTTGGTCAT ATATCTGGTG CTCATTTCAA CCCTGCTGTA
ACCATTGCTC ATGCTTCCAC CAGAAGGTTC CCACTGAAGC AGGTGACGCA CTCTTTTCTC TTGGCTAATA TATTTTACCA
ACATTTGGTC AGTTAAATTG TTTTATTTTC ATTAGATTCT GTGTATCAAT TTAGAATATT GATCGATTAT TTACTTTTAA
GTGTGTGCAG TCAAACGGTG ATGAAAATGG TCTAAAAATA ACTGTCACTC AGATTAATTT CCCAGGAAAA AAAAAGATAC
CAGCACCAAA ATTTAAGAAA TATGAAAGAA ATAGCACGTT AAGATTCATG AAGCGATTTT ATTTTCTAAA AGTAGTGAAC
AAAATTAGAG GAAAGACTTA TAAATATGCA ATAAACTGAA AAAACAAACT ACGAATATTC AACGCGCTGC CTTATGGAGA
CAACTTTCGC CAGAACAGTT TCATCGGCAT TTATGCTTGG TTAATAACTA AGCATACTTC ATTTCCAAAC AAAAACACAT
ATAATGGTCT CAGTTTGTCT CTAATTACTG AATTTTCTTC TGTTTTATGT GTTGTAGGTA CCGGCTTATG TGATAGCTCA
GGTGGTTGGA TCCACACTTG CCAGCGGAAC TCTGAGACTT CTATTCAATG GCAAGAATGA CCATTTCACA GGAACACTCC
CCGCTGGTTC TGACTTACAA TCTTTTGTGA TCGAATTCAT AATCACTTTT TATCTCATGT TTGTCATTTC TGGAGTTGCC
ACCGATAACA GAGCGGTAAT TTATCCTGCT TTTCTTAAAA ATAAAATAAT TCTTGTCTTT TTACTTGTTT GGTGATGGTT
GTCGTTTATT TGTGCCGAAC ATTTTGAATT TAGCAAATAG CGGTGGAATT CGCATATCTT GCCAAATTCT TTGGCCCTTC
CTCGTATAAA CGGTTACTTA AATTGACTAA CTGCAAAATC ATTTGGAATA GGTTGAGTCA CAGTTTACAT CCTAATACAC
ATGCAATGCG TATCAAAATC AGCATTTGAA TATTCTTGAG CCAACATTTC ATAGCTTTTG TCGATTGAAA TTAACTTTAT
CTAAAATGGT GCAGATTGGT GAGTTGGCAG GGCTTGCAGT TGGATCGACG GTACTGCTAA ATGTGATGTT TGCCGGGTAT
TGTATTAACT TATCTTCAAA CCTAATTGAT TTTAACACAG TATTAACAGG CCAATCACAT GGAAATGAGT TGTGAGATTT
ATGAACAGGC CAATCACAGG GGCATCGATG AATCCAGCAA GAAGCTTAGG GCCAGCAATT GTGCACAATG AGTACAGAGG
AATATGGATA TATCTGGTGT CAACAACTCT TGGAGCTGTG GCGGGTGCAT GGGCCTACAA TTTCATCAGA TACACTAACA
AGCCAGTGCG TGAAATCACC CAGAGTGCCT CTTTCCTCAA AGGTGATCAA GCCGACTGAT TCAACACCAA ATGCAAGCAT
TTTCCCCGGG ATTAGGGTTA AAATGCGAGG AAGAATCACT GATTTAGTGC CAAATAATTC TGTAATATAC CTAGAGGATA
TCAAAAGATT CTGCTTGTCT ACGCATCCAC CAATAGTCAT ATTTTTGGAT AAATCTTGCA ACATATGTTT TACGATAATC
TATAGTTAGA AGACAACAAA TCGTGACACA CAAGATTAGC GGGAGATAAG GGAAAAATTA ATAAATAATA AAAAAAAT

>Vigan.05G058700.01
AATCAGAATT TTAAAAGACG TATGTACCGA GGAAATACAT TAAAAGTGGT TGTTTTGGTC AAACCTCTCG TGGAAAAAAT
GGTATAAGTT TAGTCTTTGA ATCCCAGGCT TTTTGGTGCC CATAAATTGG AGTTGGCTGC TTCTCTTCTC CATCACTTTT
TGGCCTATGA GGCAAAGCTA GTTTATCACC AATACACCCT TTTCGTTCTT TCTCTTAGCT TTATCCAAAG ACCATGTCGG
TGGTGGCTGA TAATTCCGCA AACGGTGGAA ACCACCAGGT TGTTTTAAAT GTGAACGGCG AAACCCCCAA AAAGTGTGAT
CCCTCGACCA ACCAAGACTG TGTTCCTCTC TTGCAGAAGT TGGTGGCAGA GGTGGTGGGA ACGTACTTTT TGATATTTGC
AGGGTGTGCT TCGGTGGTGG TGAACCTTGA CAAGGACAGA GTGATAACAC AACCAGGGAT TTCAATTGTT TGGGGACTCA
CTGTTATGGT TTTGGTTTAC TCTGTTGGTC ATATATCTGG TGCTCATTTC AACCCTGCTG TAACCATTGC TCATGCTTCC
ACCAGAAGGT TCCCACTGAA GCAGGTACCG GCTTATGTGA TAGCTCAGGT GGTTGGATCC ACACTTGCCA GCGGAACTCT
GAGACTTCTA TTCAATGGCA AGAATGACCA TTTCACAGGA ACACTCCCCG CTGGTTCTGA CTTACAATCT TTTGTGATCG
AATTCATAAT CACTTTTTAT CTCATGTTTG TCATTTCTGG AGTTGCCACC GATAACAGAG CGATTGGTGA GTTGGCAGGG
CTTGCAGTTG GATCGACGGT ACTGCTAAAT GTGATGTTTG CCGGGCCAAT CACAGGGGCA TCGATGAATC CAGCAAGAAG
CTTAGGGCCA GCAATTGTGC ACAATGAGTA CAGAGGAATA TGGATATATC TGGTGTCAAC AACTCTTGGA GCTGTGGCGG
GTGCATGGGC CTACAATTTC ATCAGATACA CTAACAAGCC AGTGCGTGAA ATCACCCAGA GTGCCTCTTT CCTCAAAGGT
GATCAAGCCG ACTGATTCAA CACCAAATGC AAGCATTTTC CCCGGGATTA GGGTTAAAAT GCGAGGAAGA ATCACTGATT
TAGTGCCAAA TAATTCTGTA ATATACCTAG AGGATATCAA AAGATTCTGC TTGTCTACGC ATCCACCAAT AGTCATATTT
TTGGATAAAT CTTGCAACAT ATGTTTTACG ATAATCTATA GTTAGAAGAC AACAAATCGT GACACACAAG ATTAGCGGGA
GATAAGGGAA AAATTAATAA ATAATAAAAA AAAT

>Vigan.05G058700.01
ATGTCGGTGG TGGCTGATAA TTCCGCAAAC GGTGGAAACC ACCAGGTTGT TTTAAATGTG AACGGCGAAA CCCCCAAAAA
GTGTGATCCC TCGACCAACC AAGACTGTGT TCCTCTCTTG CAGAAGTTGG TGGCAGAGGT GGTGGGAACG TACTTTTTGA
TATTTGCAGG GTGTGCTTCG GTGGTGGTGA ACCTTGACAA GGACAGAGTG ATAACACAAC CAGGGATTTC AATTGTTTGG
GGACTCACTG TTATGGTTTT GGTTTACTCT GTTGGTCATA TATCTGGTGC TCATTTCAAC CCTGCTGTAA CCATTGCTCA
TGCTTCCACC AGAAGGTTCC CACTGAAGCA GGTACCGGCT TATGTGATAG CTCAGGTGGT TGGATCCACA CTTGCCAGCG
GAACTCTGAG ACTTCTATTC AATGGCAAGA ATGACCATTT CACAGGAACA CTCCCCGCTG GTTCTGACTT ACAATCTTTT
GTGATCGAAT TCATAATCAC TTTTTATCTC ATGTTTGTCA TTTCTGGAGT TGCCACCGAT AACAGAGCGA TTGGTGAGTT
GGCAGGGCTT GCAGTTGGAT CGACGGTACT GCTAAATGTG ATGTTTGCCG GGCCAATCAC AGGGGCATCG ATGAATCCAG
CAAGAAGCTT AGGGCCAGCA ATTGTGCACA ATGAGTACAG AGGAATATGG ATATATCTGG TGTCAACAAC TCTTGGAGCT
GTGGCGGGTG CATGGGCCTA CAATTTCATC AGATACACTA ACAAGCCAGT GCGTGAAATC ACCCAGAGTG CCTCTTTCCT
CAAAGGTGAT CAAGCCGACT GA

>Vigan.05G058700.01
MSVVADNSAN GGNHQVVLNV NGETPKKCDP STNQDCVPLL QKLVAEVVGT YFLIFAGCAS VVVNLDKDRV ITQPGISIVW
GLTVMVLVYS VGHISGAHFN PAVTIAHAST RRFPLKQVPA YVIAQVVGST LASGTLRLLF NGKNDHFTGT LPAGSDLQSF
VIEFIITFYL MFVISGVATD NRAIGELAGL AVGSTVLLNV MFAGPITGAS MNPARSLGPA IVHNEYRGIW IYLVSTTLGA
VAGAWAYNFI RYTNKPVREI TQSASFLKGD QAD*