VIGGS:Variant information

Chr05:4207640 - 4210197

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4207843	C	T	38	1605.77	1.00	START_GAINED(\|\|\|None\|Vigan.05G058700.01), UTR_5_PRIME(\|30\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4207965	G	A	50	1954.77	1.00	SYNONYMOUS_CODING(SILENT\|tcG/tcA\|S31\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208089	T	C	54	2456.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208095	C	A	53	2356.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208097	G	T	49	2356.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208108	C	T	50	2249.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208317	C	T	49	1920.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208411	G	A	54	2111.77	1.00	SYNONYMOUS_CODING(SILENT\|aaG/aaA\|K67\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208598	C	T	48	1949.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208611	G	A	41	1807.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208612	T	C	40	1807.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208762	G	T	54	2040.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208828	A	T	61	2429.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208856	C	T	53	2122.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4208953	T	C	55	2171.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4209281	T	A	52	2423.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4209286	T	A	52	2294.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4209402	C	A	66	2590.77	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4210161	G	A	52	2110.77	1.00	UTR_3_PRIME(\|223\|\|None\|Vigan.05G058700.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
4208118	CT	C	54	2288.73	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4209275	T	TAA	50	2167.73	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4209460	C	CAGAATACGTGGTAGA	60	3227.73	1.00	INTRON(\|\|\|None\|Vigan.05G058700.01)	Vigna nepalensis
4210044	A	AAACAC	55	2475.73	1.00	UTR_3_PRIME(\|107\|\|None\|Vigan.05G058700.01)	Vigna nepalensis