GBrowse Details

Vigan.05G044800.01

Basic Information:
Name: Vigan.05G044800.01
Multiple alignment
Variant Information
Position: Chr05:3144065..3146427 (+ strand)
Length: 2363
Functional Information:
Description: Similar to Nucleic acid-binding. [XP_007025552.1, Theobroma cacao]
InterPro: Nucleic acid-binding, OB-fold (IPR012340)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.26,73.97,63.76,49.90,103.58,127.64,49.92,46.60
Automatic updates:
Name: NM_001248308 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499987 (LOC100499987), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248907 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306493 (LOC100306493), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249680 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305527 (LOC100305527), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:3144065..3144301 (+ strand)
Length: 237
Type: five_prime_UTR
Position: Chr05:3144302..3144551 (+ strand)
Length: 250
Type: CDS
Position: Chr05:3145874..3146064 (+ strand)
Length: 191
Type: CDS
Position: Chr05:3146065..3146427 (+ strand)
Length: 363
Type: three_prime_UTR

>Vigan.05G044800.01 class=Sequence position=Chr05:3144065..3146427 (+ strand)
ATAAAAGAAA AATGGGAAAG TGAAGTCACG TGAGGTTTAG AGGATGGGAG TGGAAACGAC GTGTCGCTTG ATTCAGAAGG
GAAGTTCAAT GGAAGGTGCG AAAGAAATGC ATAAAACTGG TCGGTTTTAA GGTAGGGCTT GTGTTTGGTA GAAGAGTGTT
AGAGAGAAGA GTGAGTGAGC GAGGAGTGAG TGTGTCTGTG AGTGATTTTA TTCGGATCGA TCGAGTGTTC AATTCCAATG
GCATCATCCA ATTCCACTCA GCAAGATGTC AATAAACCTG CCAAGAGAAA ACCCGTCTTC ACCAAAGTCG ATCAGCTCAA
ACCCGGAACC AACGGTCACA CTTTAGTGGC TAAGGTCTTG TCCTCCGACA CCGTCGTGCA CAAACCGCGA CCTTCCTCTG
CCCATAACAT CAAACCCACT GTCATCGCCG AGTGCCTCAT CGGCGACGAC ACCGGCACCA TCATCTTCAC CGCTCGCAAC
GAACAAGGTA CTCCAATTTC GCCTACCCAT CCTTGTAAAA CTTATTCTTT TTTACTTATT TCAATTTCCC TTTTATCAAA
ACGGAAACTT TCCACACGGG CACTGTTTTA TTTGTCTCAA TTTTGTGTTT TTATTTTCAT TTTGGGGTTT TCTTTTTGCG
ATCCGCATTG TTCTTGGGTT TGTGAGATTG CGCGTGTTTG GTGCCCTGCT TTCAATAAAG CATCTGGGCC TATGATGGTG
GTGAGTGGAT CATGAGTGCC TGATTCCATA GATAAGATAA GCCTTTCTTC TCATATATTA TATTGGTTTG ACTGCGTGAT
ACCTTAATCC TTTTTAATCC GGTTGAAATC TCCTTTTTCT TTACTGATCT TACTCCAAGA GGTTTGATTC GGTTCTATAA
TGTGTCAACC GGCGTAGATT TGGTAAATTC TCGTGCTTCT TGCTCTGCTC TCGTGATGAA GACTGTATTT CCTCTTCCTT
GAGGTGTTGA TACGAACTAT GAATATGATT TGACATGCTG GGTGAATTTT TTGTGGGAAT GAAAGTGTGA TTAATATTGT
TCCTTTTTTG TGTTTTGCGA TTACAAAGAA GTTTTGCTTA GAAGGTGATA GTAACGATCT TAGGTGTCTT CCTTTTAACT
TTATATTCCT AACTCAAATT ACTTTTATCA AAGTGTTTTA GTTTATGCTT GTCTGCGCCA AGTTAGTTAT ATTTTTCCTG
GTCCAACTTT TTTTGTTAAT ATTTCTCTTG CTTTTTCTTC ATCTATATTG TTCATGAATC ACGGGATTGT TTAACCAGGA
ATGACCTTGT CGTTACCTTA GTACTTAGTA CTTCTTGATT AATCTTGGCT TCTTTCAAAC TTATGGGTTT TGACTTAAAT
GTTATCATGC CTTCCCTGAT GAACAACATC TTGATTTTAT ACTTTTCCAG ATCCACGTTC TTGAATAACA TCGGTGCCTT
CTGTTTTTAT ACTTCATCAG GAAGAAAATA GGAGTTGAAT TATGAAAATT CAATGTATAT AGACAGAATA TTGATCTGAC
ATTACTTATT TTCACTCTTT TCTCCTTCTT TCTATTTTGA ACAGACAAAA CCTTGAGTGA TGAGTTTAAT TTTTATTTGA
GCAGTTCATA CTATGCAAGT CTGCATGTAT GAGCATTTGC ATTTGCATAG AGTTTCAGTT GATTTCGTTT AGTGAAAGTT
ACCTTGATGT ACTTCCTTGG TAGGTAATCA ACCTACAGGT ATTGATAATT CATATAAATG TAGGCAGAGA TCAAGGGACT
AATATATGTT ATATGTTTAA GTTATTAGAT GACCTTTTCT TCTGTGCAGT TGATTTGATG AAGGCTGGTT CAACTGTAAT
TCTTCGTAAT GCAAAGATTG ACATGTTCAA GGGATCAATG AGGCTGGCTG TTGACAAATG GGGGCGTGTT GAGGTAACTG
AACCTGCAGA TTTTGTAGTT AAAGAGGATA ATAACCTATC CCTGGTTGAA TATGAATTGG TGAACGTGGT TGAAGAATAA
TCCCGTCGAA GAGTGCAAGA ACAGCTTTAT GATTTGGTTA TGGTGCATTG GATACCCCCA AAGGTAAAAC TTAACTGGTG
ATGGATGGTT GGTAAACTTT CTCACTTTAA TTAGCTTGTA TTTCCCCTTT AACATGCTTG ACATGATTTT GGGTTAAGTT
GATGTCTCTT GAACAACCTT GTGTCAAGCG AACAAGATTT GCTATTATCT TCATCAGCAA CTGTATTCAA TGAACATATA
GTATTATGTT AATATAGTTA TCCGTATCAC ATGTTTCTTT GCAGTTTCCT GTGCATCGAT ATACATAGGT ATGCCTGTGT
TTGAGTTAAT GAAGCAGCGC AATCATTATT CGTATCTTTG GCT

>Vigan.05G044800.01
ATAAAAGAAA AATGGGAAAG TGAAGTCACG TGAGGTTTAG AGGATGGGAG TGGAAACGAC GTGTCGCTTG ATTCAGAAGG
GAAGTTCAAT GGAAGGTGCG AAAGAAATGC ATAAAACTGG TCGGTTTTAA GGTAGGGCTT GTGTTTGGTA GAAGAGTGTT
AGAGAGAAGA GTGAGTGAGC GAGGAGTGAG TGTGTCTGTG AGTGATTTTA TTCGGATCGA TCGAGTGTTC AATTCCAATG
GCATCATCCA ATTCCACTCA GCAAGATGTC AATAAACCTG CCAAGAGAAA ACCCGTCTTC ACCAAAGTCG ATCAGCTCAA
ACCCGGAACC AACGGTCACA CTTTAGTGGC TAAGGTCTTG TCCTCCGACA CCGTCGTGCA CAAACCGCGA CCTTCCTCTG
CCCATAACAT CAAACCCACT GTCATCGCCG AGTGCCTCAT CGGCGACGAC ACCGGCACCA TCATCTTCAC CGCTCGCAAC
GAACAAGTTG ATTTGATGAA GGCTGGTTCA ACTGTAATTC TTCGTAATGC AAAGATTGAC ATGTTCAAGG GATCAATGAG
GCTGGCTGTT GACAAATGGG GGCGTGTTGA GGTAACTGAA CCTGCAGATT TTGTAGTTAA AGAGGATAAT AACCTATCCC
TGGTTGAATA TGAATTGGTG AACGTGGTTG AAGAATAATC CCGTCGAAGA GTGCAAGAAC AGCTTTATGA TTTGGTTATG
GTGCATTGGA TACCCCCAAA GGTAAAACTT AACTGGTGAT GGATGGTTGG TAAACTTTCT CACTTTAATT AGCTTGTATT
TCCCCTTTAA CATGCTTGAC ATGATTTTGG GTTAAGTTGA TGTCTCTTGA ACAACCTTGT GTCAAGCGAA CAAGATTTGC
TATTATCTTC ATCAGCAACT GTATTCAATG AACATATAGT ATTATGTTAA TATAGTTATC CGTATCACAT GTTTCTTTGC
AGTTTCCTGT GCATCGATAT ACATAGGTAT GCCTGTGTTT GAGTTAATGA AGCAGCGCAA TCATTATTCG TATCTTTGGC
T

>Vigan.05G044800.01
ATGGCATCAT CCAATTCCAC TCAGCAAGAT GTCAATAAAC CTGCCAAGAG AAAACCCGTC TTCACCAAAG TCGATCAGCT
CAAACCCGGA ACCAACGGTC ACACTTTAGT GGCTAAGGTC TTGTCCTCCG ACACCGTCGT GCACAAACCG CGACCTTCCT
CTGCCCATAA CATCAAACCC ACTGTCATCG CCGAGTGCCT CATCGGCGAC GACACCGGCA CCATCATCTT CACCGCTCGC
AACGAACAAG TTGATTTGAT GAAGGCTGGT TCAACTGTAA TTCTTCGTAA TGCAAAGATT GACATGTTCA AGGGATCAAT
GAGGCTGGCT GTTGACAAAT GGGGGCGTGT TGAGGTAACT GAACCTGCAG ATTTTGTAGT TAAAGAGGAT AATAACCTAT
CCCTGGTTGA ATATGAATTG GTGAACGTGG TTGAAGAATA A

>Vigan.05G044800.01
MASSNSTQQD VNKPAKRKPV FTKVDQLKPG TNGHTLVAKV LSSDTVVHKP RPSSAHNIKP TVIAECLIGD DTGTIIFTAR
NEQVDLMKAG STVILRNAKI DMFKGSMRLA VDKWGRVEVT EPADFVVKED NNLSLVEYEL VNVVEE*