GBrowse Details

Vigan.05G039500.01

Basic Information:
Name: Vigan.05G039500.01
Multiple alignment
Variant Information
Position: Chr05:2616468..2620163 (+ strand)
Length: 3696
Functional Information:
Description: Similar to NADH-quinone oxidoreductase subunit I. [G7ZWQ4, Medicago truncatula]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: membrane (GO:0016020)
Molecular Function: oxidoreductase activity, acting on NAD(P)H (GO:0016651)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539)
InterPro: 4Fe-4S binding domain (IPR001450)
NADH-quinone oxidoreductase, chain I (IPR010226)
4Fe-4S ferredoxin-type, iron-sulpur binding domain (IPR017896)
4Fe-4S ferredoxin, iron-sulphur binding, conserved site (IPR017900)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:211.29,113.28,80.04,53.40,100.95,106.41,92.89,59.64
Arabidopsis thaliana homolog: AT1G16700.1
Automatic updates:
Name: NM_001249607 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499826 (LOC100499826), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251157 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306645 (LOC100306645), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:2616468..2616778 (+ strand)
Length: 311
Type: five_prime_UTR
Position: Chr05:2616779..2616832 (+ strand)
Length: 54
Type: CDS
Position: Chr05:2617179..2617257 (+ strand)
Length: 79
Type: CDS
Position: Chr05:2617809..2617862 (+ strand)
Length: 54
Type: CDS
Position: Chr05:2617959..2618050 (+ strand)
Length: 92
Type: CDS
Position: Chr05:2618134..2618247 (+ strand)
Length: 114
Type: CDS
Position: Chr05:2619169..2619236 (+ strand)
Length: 68
Type: CDS
Position: Chr05:2619314..2619425 (+ strand)
Length: 112
Type: CDS
Position: Chr05:2619602..2619697 (+ strand)
Length: 96
Type: CDS
Position: Chr05:2619698..2620163 (+ strand)
Length: 466
Type: three_prime_UTR

>Vigan.05G039500.01 class=Sequence position=Chr05:2616468..2620163 (+ strand)
TTTTTCTCTT CGCTTTTTTT TTTTTCCTTT CTTAAACACT TCCACCATCA ATGTTAAACG CGGAACCCAT ACAATTTATC
GTTTTCTTTT ATTGCTTCAA TTTTTGCGCT ATTTCTCAAT ATTAATTTGT GTTTGGTTCA ACCACCACTT GTGTACCCCT
TTTGATTCAA TATTCTCTTC CCACTTTTTC GGTTCTTGGT TACGCCGTTG AATCTTTGTA AATAATTGTT TCGCTCGAAC
TTAATTGTTA TGTTTGAATT CATTACCATA CTGCATTTGA TTCTTTAACT TTTCATTTCC AGGTTTAGGG AATGGCTGCG
ATTTTAGCTC GGAAATCACT CCTTGCTCTT CGTGCCCGCC AATTGGTAAC ATTAATATGG TTTCGATTCT TATTTATTTG
TGGAAATGAA AGAAACAATG AAAAAAACCC ACTTGATCGG ATGTTGATTC ACTTGAGAAG CTAAATTTTA TCTGAATACC
TTGTACTTCT TCCATCACTT CCTTCGAGCT GTGAAATGGA CTATTTTTTT CTCCCTTTTT TTGTTACTCT GATTCCTATC
TGGCTTTGTG ATGCACTGTT ACTATTAAAT TACAATTTAC TGGATAATAT ATAAGAGGTT GCTGTGAATT ATATATGTAT
CATTTTAATT GTAGGATGCC AAATGTTTTG GTTAGTACTT GATACTATCC CTTGTTGTTC TGCGTGTTTA GGCTGTAAGC
GGTCAAGGCC TGCACAGCTC CCAATCCTAT GGGCTTCGAT TAAGTGCACA CTCCTTCTCT ACCAAACTAG GTCTGTTATT
TCTCTTAACA TTCTTGTGGG CATATTTCCT GCTGTTACAG AATAGTTAGA ATTAAAAAGC AAAACTATTG ATGATTGGCT
GAGTCTGAGT TTTTATTGTT TCCTGCATCA AATTGTCTAC TACATAAAAA TCATGATCCA GTTTCAAGAA ATGGACTTTT
TGAAATGGGA TAGTGTGCTG GGTCCACACG TACAAGTAAA GAATATATTT AATTATGTAT TCCTTGAAAC ACTACAATGC
ATTCCACTGC CTCATCCTCA GACGATACTG ATCCTGTGAG TTTTTACCTA GTTCCCTCTC TTTAACATCC CCTCCCCTCC
TATAAAGGCA GATAATTACG TGGGTCAAAG GAATGACTTT TCAGAATTGT GTATAGTGAA CAAACACGGC ATTTCTTTAA
CTTTGCAAAT ACCTTCACTA GCATGACCAT TTGTCTGTCA ATTGAGATAT CTCTTGGATG TCCATTTTCT TTTCACTTGC
ATGTGTTATG TATTCATGCC TTCCTTCTAT ATATCATAAT TCCGAGATGC ACAAACTACA GAGGATGAAC AAAGGGAGCA
ACTTGCAAAG GAAATTTCAA AGGATTGGAG TTCTGGTATT TATTTAGAAT CCTCTGTTTT CAGCTTGATC GTTGTTCTTT
TTGACTTTCT CCATAATGTA ACTAATTCAT TGTTGGTGTT CTGGATGATA GTTTTTGAAC GAAGCATCAA CACTCTTTTT
CTCACTGAAA TGGTTCGAGG TCTAATGCTT ACTCTGAAAT ACTTCTTTGA AACAAAAGTT ACAGTAAGTG TCTTCTGAAA
CTGTTTGCCA TCCAATAGTG TTGCATCTTC TAATTAAATG CTGAATGCCC AACATCTTTA ATGCAGATCA ATTATCCATT
TGAGAAAGGA CCTTTGAGCC CTCGTTTTCG TGGTGAACAT GCTCTCCGAA GATATCCAAC AGGGGAGGAA CGTTGTATTG
CTTGCAAACT TTGTGAAGCT GTAAGGCTGT GATTATTTAT AATTTTGGTT CGACTATGAT CCTTGAGAGC ATGCATACAC
CAAATTGCAT ATAACTTCAG GACAGCATTT TCCTGCTTCT TCCATAAACT GGACTACTAA TAATCTTGCA ATTTTACAGA
CTATTTTGTA TATTCCTGTT ATGTGTGTAT GTTACCAAGT GTTGTTTCTA TATTGGTTAA TGTAGAAAAA AATGTGCAGC
TGTTTTTTGT ATTTGAAAAA ACACTCCACA AATTGTAAGG CCTAGACCAT TGTGAATTTG TGGCTTGTCA TTTTGTTGAA
TCGGGCTTAG GAAAGTATGC TTGCGAATTG CAATTACTAA GGGATAAAAA TCTATCTAAT CAAGCTATCC CTAACATAGC
TGTAATAGTC AAATCCCTCT CATCCTCGGA GGAGGCTGTA ATGGATATAT TTTCCTATGC ATCAATAATA GCAGTTTTAT
TTGCTTTGAA TTATTTTCTT TTTGACTGAG ACAGTAGTAC TGCTGCAGCA TTATCCCTCT TCGGAGTATA AACAAATTAA
GCTACTTGAG TATTAGGGTA AAGGACATTA GTACAAATAG GGGGTTGAGG AGAATGTCTG GATAGCAGTT CACAGCATAG
GTTTTGAGCT CAAACCATGC GGCAGTCTCT AAATAGTGAA ATCCAGTAAA GGATCGATCC ATTACTAGAA AGGACTACTA
GGGACCAACT AACCCCTAAG AAATGAGCTA TAATCTATAC ATGAATAGCC TAGTTAATAA TTACAACTAA TGATCAATCC
ATTACATATT TGCATTCTCC TAATATCTCT TTTATAGGTA TTCTTTCTCC ATTTTGATAC TTTCCCCATT TCTCTCCTTC
CGGTTCGTAG AGTGAGCAGC TGTATGTTAT TGTTTTCTCT TAATCGTATT TTTTTTATTA GATATGCCCT GCACAAGCAA
TCACAATTGA GGCTGAGGAG CGAGAAGATG GCAGCCGCAG GACAACTCGG TAAATTACCT GCCTTATCTG CCCCCTCTTC
TCTTCGCCCA CTCCATTCTT GCTCTCTTAT CTGTTAAATC TTTCAGGTAC GATATTGACA TGACCAAGTG CATCTATTGT
GGTTTTTGTC AAGAGGCCTG CCCTGTTGAT GCCATTGTTG AAGGGCCAAA CTTTGAATTT GCTACAGAGA CTCATGAGGT
TCATCTTTAT TTCTTTTATG TTGAATTTTG TAAATACGTT TTGTTGTTTC TTGCTAATAA TTCTCTCTAT TGTTCTATAT
TATTAATTAT ATGTTTGACT ACTATTTATT AGTACATGTC AGTAATTGTT TACTCGCGTA TTTATTTACT TCTATTCGTG
TTTACCTGTG CTAGGAACTT TTATATGACA AAGAGAAGCT GCTTGAAAAC GGTGATCGAT GGGAGACTGA AATTGCAGAG
AACCTTAGAT CTGAAAGCCT TTACCGCTGA ATTTTACCAT GTGATCATTG CCTGTTGCTT TTTCGGTGGC AATGATGAAT
AAAATGACCA CTGAATGGTT TTAAAGAAGT GTATGCATTC ACGATTGTTA AGTCAGTTTT TTTGTCAATG TTTTTGCATT
GCTGTTAAGT ATACAATATT GTTGATGTTT ATCTTATTGA AATCTTGAAC AACTATGGAA ATAATTGAAC TATTCAACAG
ATTAGCAACT TGTAGGCGTA ATTCATCCTT AGAGGATGGA AGTACTGACG CAGTAATGCA GTTCACAGAA TCAAAAACAT
TGAGGATTCG GTGTCAATTC TGATGAAATA GTAAAATCAC TTTTGGTAGG GAATTTTAAC ACGGGTAGGG ATCAATGTAG
CTTTTGGCCC TGCTTTACTT TTTGATTTTC TTTACTCAAA ATTACCATTG TTCATTTTCT GTTTAGTATT TACAAAGTGG
AAATTTATTT GCCTTT

>Vigan.05G039500.01
TTTTTCTCTT CGCTTTTTTT TTTTTCCTTT CTTAAACACT TCCACCATCA ATGTTAAACG CGGAACCCAT ACAATTTATC
GTTTTCTTTT ATTGCTTCAA TTTTTGCGCT ATTTCTCAAT ATTAATTTGT GTTTGGTTCA ACCACCACTT GTGTACCCCT
TTTGATTCAA TATTCTCTTC CCACTTTTTC GGTTCTTGGT TACGCCGTTG AATCTTTGTA AATAATTGTT TCGCTCGAAC
TTAATTGTTA TGTTTGAATT CATTACCATA CTGCATTTGA TTCTTTAACT TTTCATTTCC AGGTTTAGGG AATGGCTGCG
ATTTTAGCTC GGAAATCACT CCTTGCTCTT CGTGCCCGCC AATTGGCTGT AAGCGGTCAA GGCCTGCACA GCTCCCAATC
CTATGGGCTT CGATTAAGTG CACACTCCTT CTCTACCAAA CTAGAGGATG AACAAAGGGA GCAACTTGCA AAGGAAATTT
CAAAGGATTG GAGTTCTGTT TTTGAACGAA GCATCAACAC TCTTTTTCTC ACTGAAATGG TTCGAGGTCT AATGCTTACT
CTGAAATACT TCTTTGAAAC AAAAGTTACA ATCAATTATC CATTTGAGAA AGGACCTTTG AGCCCTCGTT TTCGTGGTGA
ACATGCTCTC CGAAGATATC CAACAGGGGA GGAACGTTGT ATTGCTTGCA AACTTTGTGA AGCTATATGC CCTGCACAAG
CAATCACAAT TGAGGCTGAG GAGCGAGAAG ATGGCAGCCG CAGGACAACT CGGTACGATA TTGACATGAC CAAGTGCATC
TATTGTGGTT TTTGTCAAGA GGCCTGCCCT GTTGATGCCA TTGTTGAAGG GCCAAACTTT GAATTTGCTA CAGAGACTCA
TGAGGAACTT TTATATGACA AAGAGAAGCT GCTTGAAAAC GGTGATCGAT GGGAGACTGA AATTGCAGAG AACCTTAGAT
CTGAAAGCCT TTACCGCTGA ATTTTACCAT GTGATCATTG CCTGTTGCTT TTTCGGTGGC AATGATGAAT AAAATGACCA
CTGAATGGTT TTAAAGAAGT GTATGCATTC ACGATTGTTA AGTCAGTTTT TTTGTCAATG TTTTTGCATT GCTGTTAAGT
ATACAATATT GTTGATGTTT ATCTTATTGA AATCTTGAAC AACTATGGAA ATAATTGAAC TATTCAACAG ATTAGCAACT
TGTAGGCGTA ATTCATCCTT AGAGGATGGA AGTACTGACG CAGTAATGCA GTTCACAGAA TCAAAAACAT TGAGGATTCG
GTGTCAATTC TGATGAAATA GTAAAATCAC TTTTGGTAGG GAATTTTAAC ACGGGTAGGG ATCAATGTAG CTTTTGGCCC
TGCTTTACTT TTTGATTTTC TTTACTCAAA ATTACCATTG TTCATTTTCT GTTTAGTATT TACAAAGTGG AAATTTATTT
GCCTTT

>Vigan.05G039500.01
ATGGCTGCGA TTTTAGCTCG GAAATCACTC CTTGCTCTTC GTGCCCGCCA ATTGGCTGTA AGCGGTCAAG GCCTGCACAG
CTCCCAATCC TATGGGCTTC GATTAAGTGC ACACTCCTTC TCTACCAAAC TAGAGGATGA ACAAAGGGAG CAACTTGCAA
AGGAAATTTC AAAGGATTGG AGTTCTGTTT TTGAACGAAG CATCAACACT CTTTTTCTCA CTGAAATGGT TCGAGGTCTA
ATGCTTACTC TGAAATACTT CTTTGAAACA AAAGTTACAA TCAATTATCC ATTTGAGAAA GGACCTTTGA GCCCTCGTTT
TCGTGGTGAA CATGCTCTCC GAAGATATCC AACAGGGGAG GAACGTTGTA TTGCTTGCAA ACTTTGTGAA GCTATATGCC
CTGCACAAGC AATCACAATT GAGGCTGAGG AGCGAGAAGA TGGCAGCCGC AGGACAACTC GGTACGATAT TGACATGACC
AAGTGCATCT ATTGTGGTTT TTGTCAAGAG GCCTGCCCTG TTGATGCCAT TGTTGAAGGG CCAAACTTTG AATTTGCTAC
AGAGACTCAT GAGGAACTTT TATATGACAA AGAGAAGCTG CTTGAAAACG GTGATCGATG GGAGACTGAA ATTGCAGAGA
ACCTTAGATC TGAAAGCCTT TACCGCTGA

>Vigan.05G039500.01
MAAILARKSL LALRARQLAV SGQGLHSSQS YGLRLSAHSF STKLEDEQRE QLAKEISKDW SSVFERSINT LFLTEMVRGL
MLTLKYFFET KVTINYPFEK GPLSPRFRGE HALRRYPTGE ERCIACKLCE AICPAQAITI EAEEREDGSR RTTRYDIDMT
KCIYCGFCQE ACPVDAIVEG PNFEFATETH EELLYDKEKL LENGDRWETE IAENLRSESL YR*