Variant information

Chr05:2616468 - 2620163

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2616509CT512335.771.00UPSTREAM(|1532||None|Vigan.05G039400.01), UTR_5_PRIME(|270||None|Vigan.05G039500.01)Vigna nepalensis
2616510CA522335.771.00UPSTREAM(|1533||None|Vigan.05G039400.01), UTR_5_PRIME(|269||None|Vigan.05G039500.01)Vigna nepalensis
2616545AC532117.771.00UPSTREAM(|1568||None|Vigan.05G039400.01), UTR_5_PRIME(|234||None|Vigan.05G039500.01)Vigna nepalensis
2616673CG622324.771.00UPSTREAM(|1696||None|Vigan.05G039400.01), UTR_5_PRIME(|106||None|Vigan.05G039500.01)Vigna nepalensis
2617007TG481958.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|2030||None|Vigan.05G039400.01)Vigna nepalensis
2617076AG682702.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|2099||None|Vigan.05G039400.01)Vigna nepalensis
2617322AG682793.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|2345||None|Vigan.05G039400.01)Vigna nepalensis
2617353TC682717.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|2376||None|Vigan.05G039400.01)Vigna nepalensis
2617805AG672759.771.00INTRON(|||None|Vigan.05G039500.01), SPLICE_SITE_REGION(|||None|Vigan.05G039500.01), UPSTREAM(|2828||None|Vigan.05G039400.01), UPSTREAM(|4742||None|Vigan.05G039600.01)Vigna nepalensis
2617878CA521910.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|2901||None|Vigan.05G039400.01), UPSTREAM(|4669||None|Vigan.05G039600.01)Vigna nepalensis
2618291TC542160.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3314||None|Vigan.05G039400.01), UPSTREAM(|4256||None|Vigan.05G039600.01)Vigna nepalensis
2618323TC522134.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3346||None|Vigan.05G039400.01), UPSTREAM(|4224||None|Vigan.05G039600.01)Vigna nepalensis
2618478AT572248.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3501||None|Vigan.05G039400.01), UPSTREAM(|4069||None|Vigan.05G039600.01)Vigna nepalensis
2618530GC552232.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3553||None|Vigan.05G039400.01), UPSTREAM(|4017||None|Vigan.05G039600.01)Vigna nepalensis
2618583AG471857.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3606||None|Vigan.05G039400.01), UPSTREAM(|3964||None|Vigan.05G039600.01)Vigna nepalensis
2618866AC371483.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3681||None|Vigan.05G039600.01), UPSTREAM(|3889||None|Vigan.05G039400.01)Vigna nepalensis
2618955AG582314.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3592||None|Vigan.05G039600.01), UPSTREAM(|3978||None|Vigan.05G039400.01)Vigna nepalensis
2619067AT552090.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3480||None|Vigan.05G039600.01), UPSTREAM(|4090||None|Vigan.05G039400.01)Vigna nepalensis
2619112TC642516.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3435||None|Vigan.05G039600.01), UPSTREAM(|4135||None|Vigan.05G039400.01)Vigna nepalensis
2619259CT421551.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3288||None|Vigan.05G039600.01), UPSTREAM(|4282||None|Vigan.05G039400.01)Vigna nepalensis
2619422TC431727.771.00SYNONYMOUS_CODING(SILENT|caT/caC|H190|None|Vigan.05G039500.01), UPSTREAM(|3125||None|Vigan.05G039600.01), UPSTREAM(|4445||None|Vigan.05G039400.01)Vigna nepalensis
2619455TA512031.771.00INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3092||None|Vigan.05G039600.01), UPSTREAM(|4478||None|Vigan.05G039400.01)Vigna nepalensis
2619880CA572314.771.00UPSTREAM(|2667||None|Vigan.05G039600.01), UPSTREAM(|4903||None|Vigan.05G039400.01), UTR_3_PRIME(|183||None|Vigan.05G039500.01)Vigna nepalensis
2620091GT522065.771.00UPSTREAM(|2456||None|Vigan.05G039600.01), UTR_3_PRIME(|394||None|Vigan.05G039500.01)Vigna nepalensis
2620136TC492131.771.00UPSTREAM(|2411||None|Vigan.05G039600.01), UTR_3_PRIME(|439||None|Vigan.05G039500.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
2616480CTTTC381844.731.00UPSTREAM(|1504||None|Vigan.05G039400.01), UTR_5_PRIME(|296||None|Vigan.05G039500.01)Vigna nepalensis
2616492TTCCCCC452069.731.00UPSTREAM(|1516||None|Vigan.05G039400.01), UTR_5_PRIME(|286||None|Vigan.05G039500.01)Vigna nepalensis
2618112AATG642589.730.95INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3136||None|Vigan.05G039400.01), UPSTREAM(|4434||None|Vigan.05G039600.01)Vigna nepalensis
2619155AAT651817.730.98INTRON(|||None|Vigan.05G039500.01), UPSTREAM(|3391||None|Vigan.05G039600.01), UPSTREAM(|4179||None|Vigan.05G039400.01)Vigna nepalensis
2620117GGT502191.731.00UPSTREAM(|2429||None|Vigan.05G039600.01), UTR_3_PRIME(|421||None|Vigan.05G039500.01)Vigna nepalensis