GBrowse Details

Vigan.05G002200.01

Basic Information:
Name: Vigan.05G002200.01
Multiple alignment
Variant Information
Position: Chr05:136643..142324 (+ strand)
Length: 5682
Functional Information:
Description: Similar to Uncharacterized protein. [V4T0F2, Citrus clementina.]
GO: Biological Process: protein phosphorylation (GO:0006468)
Molecular Function: protein kinase activity (GO:0004672)
Molecular Function: protein serine/threonine kinase activity (GO:0004674)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro: Protein kinase domain (IPR000719)
Serine/threonine- / dual specificity protein kinase, catalytic domain (IPR002290)
Serine/threonine-protein kinase, active site (IPR008271)
Protein kinase-like domain (IPR011009)
Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:124.03,97.41,52.44,50.47,20.69,37.20,38.63,47.46
Arabidopsis thaliana homolog: AT1G06390.1, AT1G09840.1, AT1G57870.3, AT2G30980.1, AT3G05840.2, AT3G61160.2, AT4G00720.1, AT4G18710.1, AT5G14640.1, AT5G26751.1
Automatic updates:
Name: NM_001253989 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max shaggy-related protein kinase kappa-like (LOC100820098), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254144 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max shaggy-related protein kinase kappa-like (LOC100799387), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:136643..136996 (+ strand)
Length: 354
Type: five_prime_UTR
Position: Chr05:136997..137137 (+ strand)
Length: 141
Type: CDS
Position: Chr05:137380..137472 (+ strand)
Length: 93
Type: CDS
Position: Chr05:137599..137658 (+ strand)
Length: 60
Type: CDS
Position: Chr05:137762..138034 (+ strand)
Length: 273
Type: CDS
Position: Chr05:138318..138392 (+ strand)
Length: 75
Type: CDS
Position: Chr05:139628..139684 (+ strand)
Length: 57
Type: CDS
Position: Chr05:139774..139914 (+ strand)
Length: 141
Type: CDS
Position: Chr05:140010..140060 (+ strand)
Length: 51
Type: CDS
Position: Chr05:140466..140561 (+ strand)
Length: 96
Type: CDS
Position: Chr05:141576..141659 (+ strand)
Length: 84
Type: CDS
Position: Chr05:141748..141850 (+ strand)
Length: 103
Type: CDS
Position: Chr05:142000..142088 (+ strand)
Length: 89
Type: CDS
Position: Chr05:142089..142324 (+ strand)
Length: 236
Type: three_prime_UTR

>Vigan.05G002200.01 class=Sequence position=Chr05:136643..142324 (+ strand)
GAAAAAAAGA AAAAAAAGAA GAAGAAAGAA TTGAAATGGT AAAGTGGGTA TAGGGAAGGT TGAAGAAGGA GGAATAATTG
GTATTATTGT ATAGATGTAA AGGGAAAAGG TGGAATGGAA TAAATAAGAA GAGAGAATGG AAGTGAAGAA GAAGAAGAGA
TGAGAATGGT TGAAAGTGAG AGAGAGTAAG ATGCAATTCC ACTGCTTTCA TTCTCACCAC AAACTGACAC TTCCACTTCA
ACAAGGTCAC TCTCACATCT TCTTTACCAT TATCTTTTTT CCTCTCTCCT CTCTCCATCC ATCTCTCTTC CCTTTTCCCT
TTCCGATTAG ATCTGATCCA ACTCTTCCTC ATCAATGGCC TCCGCTAGCC TCGGAACTGG TGGGGTCGGC AGTTCCAGGT
CCGTTAACGC TGCCTTCAGG GGTTCTTCCA GTTCCGTCGA TTGGCTTGGC AGAGAGATGC TCGAGATGAG ATTGAGAGAC
CACGACGAAG ACAGGGTCTG TTCACTGTTA CCCTTTTTCA ACTTTTTTTT TTCATTTTTT TTTAATTCAA GAAGCACCAT
CTCTCAATTC ATCTTTTTCC TGTTCCATTC TCTTCTTCTT TAACCACTAT CAAAAGTGCT CGGGACACAA ACACAAGTTT
TGAAACCACC TTCTCCCGAA ATTTTAATTT TTTTTCCTAC CGTTTTTGTT GTTTCTGTTT CAGTAGGTTT CAATTGCCCC
TGGTTTATAT TATGCAGGAT AGTGAGCCTG ACATCATCGA TGGTGTGGGT GCTGAGACCG GGCACGTGAT AAGAACCAGT
ATCGGTGGCC GAAATGGTCA ATCTAAGCAG GTAAGAAAAT AAATTATGGG TCATTTGGTG TTTGAGAATT CTCGAATTCT
CGAGGTTCTG GAATCATGGT TGAACTGTTG ACAACTGGCG AGTTCTTTCT GACAAGTTCT TTGTTTGAGT TGACAGAATG
TCAGTTATAT TGCAGAACAC GTGGTTGGAA CAGGCTCTTT TGGTGTTGTT TTTCAGGTGA GACATACCAA CATAGTTTGG
TTTTGATATC TTTTGTGAAC CTGTGCTGTC CACGTATGAC ATTCTGATAC CTTTTTCATT TTATCAATGC TTTTATCAGG
CAAAATGTAG AGAAACGGGA GAGATTGTAG CCATCAAGAA GGTTCTCCAG GACAAGCGCT ACAAGAATAG AGAGTTACAG
ATTATGCAAA TGCTGGATCA TCCAAATATT GTTGCCCTAC GACATTGTTT CTTCTCAACA ACTGACAAAG AAGAAGTTTA
CTTGAATCTT GTCCTTGAAT ATGTTCCTGA AACCGTGAAT CGTATCGCAA GGAGCTACAG CAGGATTAAC CAGCGAATGC
CTTTGATATA TGTAAAGCTC TATACCTACC AGGTATGTGA TTGCTTGCTT CCTGTTAGAT CTGGAAATGA AAAACTAAAG
TTCCCCAGCT TTAGCTATGT CTGATGTGAA TATTTTGAGT TCCAGTTTGA CCTATGGATT TCTTTTTCAA AGGAATTGTT
AAAAAAGGAA AAAATAGTGG ATATTGCTTT TTGTGCATGA GAAACAGACT TGCAGAACGA AAGTGAGGGA TCGTGTCATT
TACACATTCT AAATCCTTAT TCCTTTCTTG CCCATTTATA TCTTTATTTC TTCTTTTCTC TGGTTTTGTC TGCAGATTTG
CAGGGCACTT GCTTATATAC ATAACTGCAT TGGTATATGT CACCGTGACA TCAAACCTCA GAACCTACTT GTAAGATAAT
TCTGAGTTAC GGATTTATTT GTTGTGTGGA ACTTATTTTG TATACAGTAT TTCTCTCATT TGTTATGATA TTATTTATTA
TTTATTTTTA GCATTCTTAT ATCTGATATA AATCTACACT GAAAAAGGAA GTAGGAAGCA CTAGTGAACT CCAATTAATA
TTTTGTGATC AACAACAATC AAGTCTTTTT CCCTTTAGGT ATGGTTGACC ACATGAACCA AGTGATGTCA TTATGTTCTA
TCATAAATCA TATACAAAAA CAAAACATTG AACTCTAAAT CCTTTTTAAT GGTTTCAACT ATAGCTTTTC TCAATCTCCC
TTTGTCTAAC ACATTAACGA TTGAATTGCC TTTTATCCAG CAGTATACTC TCCCAACTAG GGCTTCTACA TGTCTTCTCC
ACACATGTTT ACGCATCCCT CTTTCAATTA GTATGTTATG TTCTCAAGCA AATAATCACT CGTCTTATTC TGTTCATTTT
AATTTTATTA TTCTTGAAAT GCATGCCTGA CTGCTTGGTC CCACATCCTC CCACGTCTCT GCATGTGCGA ATAAAGGTGA
TTCTATATTG TTAAATGTAG TCTGCTTTAA TCAGTTGATG ATGTCTGAAT TTTCCTTTAA TTTGCATTGA AGTTGATGGT
TTTGTGAATG CTGGTCGTAC TTTATAATTG TGTGGAAGCC CAGTCTTCAT ATTACTAATA ACATGTCCTA ACCAATTGGT
CAAAGAAATT CAGTACCATG TTATGTCCAA CCTCCTAAAG CTCGAGCTAT TAAGTTAGAG AGGCACAAGC TGCAAAGCAA
TAATAGCTTG ATTTTGCTAA TAACATGTCC TAATCACTTA GTCAAAGAGA TTCAGTACCA TGTTCTGGTC CAACTTCCTA
AAAGCTTGAG CGATTAAGTT AGAGAGGTTG AAGCTGCACG GCAACAATGG CTTTATTTTA CCAACACTGT TAAATCTTTA
TGCGAAAGTC TTGTTTCATT GTTTTTCGGT TAGAATCATG TAGTAGTGAT TATTTGGATT GTCAGACTTT AACTTTTTGT
TAAAAAAAAA TTAATATCTA GATCTTTTGG AATAAATTCT TATATAATGT GAAAGATAAG TGAAGCTTTT ATAACCATTT
AAGACTATGG CTTAGCAGCC TACCTGAAAG ATTATAGAGT ATGTAGCAAA TATACTTGTA TGCCATCTGT TACTATTTGT
TTGACTCAAA TGTATGTCAT GTCAGGTGAA TCCGCATACT CATCAGCTGA AACTATGTGA TTTTGGTAGT GCAAAAGTGT
TGGTAAGATA TTGATTTAAG TGCACTGTTG GTTGATGGAA GCTACTATAT TTTGTTCTTG AGTTTCATCC ATATTCTTCT
AATACATCCA GGTAAAAGGA GAACCAAACG TTTCTTACAT CTGTTCAAGA TACTACCGTG CTCCGGAACT TATATTTGGG
GCCACCGAAT ATACAACTGC CATAGACATA TGGTCTACTG GTTGCGTAAT GGCTGAATTA CTCCTTGGAC AGGTAATGTA
GTTCTTGAAA AATTGTGGCT ACATTTTTCT CATTTCATCA TTTATCTGTT TCATTGTGTT TTTCCTGAAG TTCAAGTTGG
TTTGCAGCCA TTGTTTCCTG GAGAGAGTGG AGTTGATCAG CTAGTTGAAA TCATCAAGGT AAGAATTTAC CTTATGGTTT
TCAATTAATC TGGATTTTGC TATCCTAGAT TGTGAATATA TTTTTTAGAT GTTATATGCA CAATATATTC AGTTTGGTCC
ACCAGAAACG GTATATGTCC TGAGGATTTC TACATTTTCT CTGCATCCTG GCTCAAGGAA AGGAATGTAT TTATTTTCTT
TAGAGCAACG ATTGCAGTCT TAATGTACAA ATATTCTGCT ACGCTTGATC TTCTTGTCTT GGTTTGAGAG AAATATACAA
AACAAAAAGT AAATTTTCCT TTACTTGTAC ATTTTTGTAA TTGAAAGTTC TCAAGTTCTT TCATTGTTCT GGTATAAAGT
TTTATCGTTC ACTATTCTCA CAATAGAGTC ATGAACAATT ACATTTAATT GTTTCTATTT CAGGTTTTGG GAACTCCAAC
TAGGGAGGAG ATAAAGTGCA TGAACCCTAA TTATACTGAG TTTAAGTTTC CACAGATAAA ACCTCATCCA TGGCACAAGG
TTCTTTCTCT CATCTTCTTT CTTGCATTCT GTAACTTCCC ATGACTGTAG TAATTCAGGA TTTAGGTTAA ATTTCCTTTG
CTAATTCATT GCCTAGAACA GTGCATTTTA ATCACTGTTG AACCTGTACC ATGCTGATAC TATGCACTTC ATAAACGATA
TGTATGTCGA TGTGGTCCAT TTGATGGTAT TTGCATTCTT TTTCTTGTGG GGACTCTAAG CAACTGGTAT AGTTGAGTAA
TTGAGTTGCT AAAATTAGTC TATGGGAGGG TGATGAATTC CACATTACCA TCCGGTATTT TGAATATAGT TTATTCCTAC
AAGTACGATA TTTCACAGGG AAAATGGGAA CCGAGTGTTT CATATAAACG AGAAGTAGAA TCTTTTTGAT ACTTGTATTC
TGACCCTATC CCAACACCAT TTTTCAAAGT AATAGTATTA TGAAAAATCA TTATACTGTT GTGCATTTTT TGGGGTGGGG
GTTCTTTGTG CAAGTATTTC AATATGATAT TATTATAATG TAGCAGAATT TCGTGTTTTT CCCTCACAAG CAGTAGAAAC
TACATTTTCT TTTAATTTAG TTTTTTTCCC ACTTTCTAGT TGTAGTTTAA TTGTAGTTGT TGCAGGTTGA TATAAATGGT
TTTGGTTGTA AGTTTTTGGG CATTAAAAAG AGTTGAATAT AGATCAAGGA GTCAGCCTTT TTCTGGGTTT GGTTTGTCTG
CCACACTGGA TATGCATGAG ACTGGATTAG TGCATTAGTA CTGATAGTTG TAGGTAGATA GGACAGTACG TCGTCAAAAG
TTAAATTGTA ATGGGCTACA TTTTTAAAAC ATGGTCCCAG TTTCTCAATG GTTAGCGAGG GATTGAATCA ATGTTATATA
TCAGTTCCTC TAATGTATAA CATTGATTAA TATTTGTGTG CACGCGTGAA GCTATTTAAT TTGAGCATAT GCAAAGTATT
AGTAAAACAG GTGTGAATGA GAGATTTACA ATGATATTAT CATGATTCAA TAGGTCTTTC AGAAACGTTT ACCCCCGGAA
GCAGTGGATC TTGTCTGTAG GTTCTTTCAG TACTCTCCCA ATTTGAGATG CACTGCGGTA AGTTGAATGT CTGCAATGTT
TTTATAATTT ACTTTTCTCT GTTGTAAAAT TGTTTGACTA TTATGATGTT ATGGCACTGC TGCAGTTGGA GGCTTGCATT
CATCCCTTTT TTGATGAATT GAGGGACCCG AACACCCGTC TTCCTAATGG TCGACCACTT CCTCCACTTT TCAATTTTAA
ATCTCAGGGT GAGTTTAATT AGCTCCCGCA ATCTAATAAT GATGTTTCTT TGAATTAGCA TAGTATGGGT TTTAGTCTTA
TGCTTTGGGA TCTCGGGGTT ACAAAGCAAA TTCTGTTATA TTATTTTCGT TAATTTTCTG CTTGTTCATT TATGCAGAAC
TTTCTGGCAT ACCCCCTGAT GTCATCAATC TTCTTATTCC AGAGCATGCG CGTAAACAGA ACTTATTTAT GGCTTTGCAC
ACTTAGCTAT TTTACTCTCT AAGTTGTCGT CATTTTCTAG CAGCCTGTAA ATTATCTGGT GCATCTGAGA AAAACTCCAC
AGAAAGAGTT CTTAGAATTA TATTTTATTA TATATAATAT AATATATAAC GTTTTTTTTT TCTTTTTGAA ATTTTATTGT
CAAAAGGAGT TGTTTTTCTA TTCTGGTTGA GGAGACGTTT TCATGTATAT TTATGTCATA CGTGTGCCAC TGCTTATTCG
AA

>Vigan.05G002200.01
GAAAAAAAGA AAAAAAAGAA GAAGAAAGAA TTGAAATGGT AAAGTGGGTA TAGGGAAGGT TGAAGAAGGA GGAATAATTG
GTATTATTGT ATAGATGTAA AGGGAAAAGG TGGAATGGAA TAAATAAGAA GAGAGAATGG AAGTGAAGAA GAAGAAGAGA
TGAGAATGGT TGAAAGTGAG AGAGAGTAAG ATGCAATTCC ACTGCTTTCA TTCTCACCAC AAACTGACAC TTCCACTTCA
ACAAGGTCAC TCTCACATCT TCTTTACCAT TATCTTTTTT CCTCTCTCCT CTCTCCATCC ATCTCTCTTC CCTTTTCCCT
TTCCGATTAG ATCTGATCCA ACTCTTCCTC ATCAATGGCC TCCGCTAGCC TCGGAACTGG TGGGGTCGGC AGTTCCAGGT
CCGTTAACGC TGCCTTCAGG GGTTCTTCCA GTTCCGTCGA TTGGCTTGGC AGAGAGATGC TCGAGATGAG ATTGAGAGAC
CACGACGAAG ACAGGGATAG TGAGCCTGAC ATCATCGATG GTGTGGGTGC TGAGACCGGG CACGTGATAA GAACCAGTAT
CGGTGGCCGA AATGGTCAAT CTAAGCAGAA TGTCAGTTAT ATTGCAGAAC ACGTGGTTGG AACAGGCTCT TTTGGTGTTG
TTTTTCAGGC AAAATGTAGA GAAACGGGAG AGATTGTAGC CATCAAGAAG GTTCTCCAGG ACAAGCGCTA CAAGAATAGA
GAGTTACAGA TTATGCAAAT GCTGGATCAT CCAAATATTG TTGCCCTACG ACATTGTTTC TTCTCAACAA CTGACAAAGA
AGAAGTTTAC TTGAATCTTG TCCTTGAATA TGTTCCTGAA ACCGTGAATC GTATCGCAAG GAGCTACAGC AGGATTAACC
AGCGAATGCC TTTGATATAT GTAAAGCTCT ATACCTACCA GATTTGCAGG GCACTTGCTT ATATACATAA CTGCATTGGT
ATATGTCACC GTGACATCAA ACCTCAGAAC CTACTTGTGA ATCCGCATAC TCATCAGCTG AAACTATGTG ATTTTGGTAG
TGCAAAAGTG TTGGTAAAAG GAGAACCAAA CGTTTCTTAC ATCTGTTCAA GATACTACCG TGCTCCGGAA CTTATATTTG
GGGCCACCGA ATATACAACT GCCATAGACA TATGGTCTAC TGGTTGCGTA ATGGCTGAAT TACTCCTTGG ACAGCCATTG
TTTCCTGGAG AGAGTGGAGT TGATCAGCTA GTTGAAATCA TCAAGGTTTT GGGAACTCCA ACTAGGGAGG AGATAAAGTG
CATGAACCCT AATTATACTG AGTTTAAGTT TCCACAGATA AAACCTCATC CATGGCACAA GGTCTTTCAG AAACGTTTAC
CCCCGGAAGC AGTGGATCTT GTCTGTAGGT TCTTTCAGTA CTCTCCCAAT TTGAGATGCA CTGCGTTGGA GGCTTGCATT
CATCCCTTTT TTGATGAATT GAGGGACCCG AACACCCGTC TTCCTAATGG TCGACCACTT CCTCCACTTT TCAATTTTAA
ATCTCAGGAA CTTTCTGGCA TACCCCCTGA TGTCATCAAT CTTCTTATTC CAGAGCATGC GCGTAAACAG AACTTATTTA
TGGCTTTGCA CACTTAGCTA TTTTACTCTC TAAGTTGTCG TCATTTTCTA GCAGCCTGTA AATTATCTGG TGCATCTGAG
AAAAACTCCA CAGAAAGAGT TCTTAGAATT ATATTTTATT ATATATAATA TAATATATAA CGTTTTTTTT TTCTTTTTGA
AATTTTATTG TCAAAAGGAG TTGTTTTTCT ATTCTGGTTG AGGAGACGTT TTCATGTATA TTTATGTCAT ACGTGTGCCA
CTGCTTATTC GAA

>Vigan.05G002200.01
ATGGCCTCCG CTAGCCTCGG AACTGGTGGG GTCGGCAGTT CCAGGTCCGT TAACGCTGCC TTCAGGGGTT CTTCCAGTTC
CGTCGATTGG CTTGGCAGAG AGATGCTCGA GATGAGATTG AGAGACCACG ACGAAGACAG GGATAGTGAG CCTGACATCA
TCGATGGTGT GGGTGCTGAG ACCGGGCACG TGATAAGAAC CAGTATCGGT GGCCGAAATG GTCAATCTAA GCAGAATGTC
AGTTATATTG CAGAACACGT GGTTGGAACA GGCTCTTTTG GTGTTGTTTT TCAGGCAAAA TGTAGAGAAA CGGGAGAGAT
TGTAGCCATC AAGAAGGTTC TCCAGGACAA GCGCTACAAG AATAGAGAGT TACAGATTAT GCAAATGCTG GATCATCCAA
ATATTGTTGC CCTACGACAT TGTTTCTTCT CAACAACTGA CAAAGAAGAA GTTTACTTGA ATCTTGTCCT TGAATATGTT
CCTGAAACCG TGAATCGTAT CGCAAGGAGC TACAGCAGGA TTAACCAGCG AATGCCTTTG ATATATGTAA AGCTCTATAC
CTACCAGATT TGCAGGGCAC TTGCTTATAT ACATAACTGC ATTGGTATAT GTCACCGTGA CATCAAACCT CAGAACCTAC
TTGTGAATCC GCATACTCAT CAGCTGAAAC TATGTGATTT TGGTAGTGCA AAAGTGTTGG TAAAAGGAGA ACCAAACGTT
TCTTACATCT GTTCAAGATA CTACCGTGCT CCGGAACTTA TATTTGGGGC CACCGAATAT ACAACTGCCA TAGACATATG
GTCTACTGGT TGCGTAATGG CTGAATTACT CCTTGGACAG CCATTGTTTC CTGGAGAGAG TGGAGTTGAT CAGCTAGTTG
AAATCATCAA GGTTTTGGGA ACTCCAACTA GGGAGGAGAT AAAGTGCATG AACCCTAATT ATACTGAGTT TAAGTTTCCA
CAGATAAAAC CTCATCCATG GCACAAGGTC TTTCAGAAAC GTTTACCCCC GGAAGCAGTG GATCTTGTCT GTAGGTTCTT
TCAGTACTCT CCCAATTTGA GATGCACTGC GTTGGAGGCT TGCATTCATC CCTTTTTTGA TGAATTGAGG GACCCGAACA
CCCGTCTTCC TAATGGTCGA CCACTTCCTC CACTTTTCAA TTTTAAATCT CAGGAACTTT CTGGCATACC CCCTGATGTC
ATCAATCTTC TTATTCCAGA GCATGCGCGT AAACAGAACT TATTTATGGC TTTGCACACT TAG

>Vigan.05G002200.01
MASASLGTGG VGSSRSVNAA FRGSSSSVDW LGREMLEMRL RDHDEDRDSE PDIIDGVGAE TGHVIRTSIG GRNGQSKQNV
SYIAEHVVGT GSFGVVFQAK CRETGEIVAI KKVLQDKRYK NRELQIMQML DHPNIVALRH CFFSTTDKEE VYLNLVLEYV
PETVNRIARS YSRINQRMPL IYVKLYTYQI CRALAYIHNC IGICHRDIKP QNLLVNPHTH QLKLCDFGSA KVLVKGEPNV
SYICSRYYRA PELIFGATEY TTAIDIWSTG CVMAELLLGQ PLFPGESGVD QLVEIIKVLG TPTREEIKCM NPNYTEFKFP
QIKPHPWHKV FQKRLPPEAV DLVCRFFQYS PNLRCTALEA CIHPFFDELR DPNTRLPNGR PLPPLFNFKS QELSGIPPDV
INLLIPEHAR KQNLFMALHT *