GBrowse Details

Vigan.04G422600.01

Basic Information:
Name: Vigan.04G422600.01
Multiple alignment
Variant Information
Position: Chr04:53116314..53120161 (+ strand)
Length: 3848
Functional Information:
Description: Similar to Sieve element occlusion i. [E2FKI2, Glycine max]
InterPro: Sieve element occlusion, N-terminal (IPR027942)
Sieve element occlusion, C-terminal (IPR027944)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,0.60,0.16,0.07,0.18,0.05,1.76
Automatic updates:
Name: NM_001253296 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sieve element occlusion i (SEOI), mRNA.
PubMed ID: 20932300 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:53116314..53116502 (+ strand)
Length: 189
Type: five_prime_UTR
Position: Chr04:53116503..53116625 (+ strand)
Length: 123
Type: CDS
Position: Chr04:53116798..53116905 (+ strand)
Length: 108
Type: CDS
Position: Chr04:53116991..53117436 (+ strand)
Length: 446
Type: CDS
Position: Chr04:53117593..53117705 (+ strand)
Length: 113
Type: CDS
Position: Chr04:53117798..53117925 (+ strand)
Length: 128
Type: CDS
Position: Chr04:53118644..53119132 (+ strand)
Length: 489
Type: CDS
Position: Chr04:53119222..53119836 (+ strand)
Length: 615
Type: CDS
Position: Chr04:53119837..53120161 (+ strand)
Length: 325
Type: three_prime_UTR

>Vigan.04G422600.01 class=Sequence position=Chr04:53116314..53120161 (+ strand)
TAAACATAAT AAGAATACTT CAATAGACAC ATATTGATGG TTCCCATCAT CTTTCTGTTT TGATCAAAAG AATATAAATA
TAGCTACAGA ATTATCCAAT GATAGCAGAA TCTCGTAAAT TTTGCAGTGT GGCAAGCTCA TGTGGTGCAT TTCAACCTTG
AGTTCCTTTT TTCTTTCTCA ATTTGAAACA TGCAACGTGA TAATCTTATA AAGAAGCTCC TCCTTACACA TGATCCAGAT
GGTCGTAGGT TGGATTCTGA GGCAATTCTT CTTGCAGTGG GCAACATTAT GTTTCATTCT TCCAAAATAA TAGTAATTTT
TATCTACCTA GATACACCCT TCATGCTGTA GCCATAAACT CATGCAATCT CATACCATTT TTAAAACTAT CCCTAACAAG
AAATTCATTA AACTGAGTGT GGCATAGAAA ACATATTACC TGTATTGAAA ATTTCAGATT ATAATTTCTA TTGGCTTGTT
TCAGGTGACT TGTAATTTAT ATTCTGCTTC CTTTCATAAG ACGGATATAA CTGAAATTGA AACGATTGGT TGTAGTGAAT
CGGTAGGATT CATCATCACA AAAATATGCA AGGTATTCTA CATGTTTGCT GTTTTGACAA TGTGAGTGCA TGCATTTGAT
GTTGGACTTA TGATTAACAT ATCTATTTTG TTGGCAGATG CTCTGCAGAT GCTCTGGTGA AGGTGATATT AACTCAAGGG
TCATAAATTT GTTTGATTTG ATAGGGAAGT ATAGCTGGGA CGCAAAAGTA GTTCTAGTGC TTGCTGCTTT TGCTGTAAGA
TATGGTGAAT TTTGGCAACT TATGCAGCTA CATTATGATA ACAGTTTGGC AGCTTTAATT TCAAGTATTA AGAAGCTTCC
CTGCAACTTA AAGCCACTGA AGCTACAAAT CAAGGCATTG AGCTTGTTGG TTGAGACCAT GATGGATGTG GCTATGTGTA
TAATTAAGTT TGAATACTTG CCTCTTCAAC ATGTTGAGCA TGGAGATCAT ATATTCCGTG TCACAAAGTC TCAAATATAC
GAAGCTGCAT ACTGGATCGC CAGAAGCTGT TTAGCATGTT TTTCCCAAGT CAAGGACTTC ACAACCAAGC AACATGAGCA
AGTGCATGTT TCTTCTCTTT GAGGCTCAGA TCAATACTGC CAAACATGCA TAATTCTTTT ATTTATTTGA ATAGCCTCTC
AGAATTTTTG ACAGTTTGGA AAGCACGTAA AAAATTTGCC TAGGATGATA TTTGATTTAT TGGTATCCAC ACATTTCAGG
TACTCAGATT CAGCAATAAT TGCTGCTTGG GAGCTTTCAA GTTTGGCGTA TAGATTAAGT GGCACACGCT GCAATCTTAG
AAGACAGGTG GATCTGTGTT ACGAAGAAAT AGGTTACTTT TTAGCTTCAT AATAATGCTT ACAATGACAG GTTTATTAAA
CAATTCTGAT TTATGTGATC AGTGATTTAT AATTAATGTT TCAGAGAGAA ACTTGTATCA GAGGCTGTCG GATCTTGCTC
GTGAGGAGCA CATTGATAAT CAAAAGATTC TCACTTTATT TTTTCCTTCA AATAATTACT TGCCACTGAA GGATTGCTCA
ACAGAAGTAA AGGTATTATG CTCTTCGATT GTGGTGGGAA ACACATCGTC CTAACCACAA CCACTTACTT TTAGAAGGAT
TATTTTAGTA AACTATAGTT TTTGGTGTAT TTTGAGGAAA TAAAGATTAT AATTTGCTAA TACTCTTCTT AACAATGAAG
TGGGTATAAA TAGGCAAATT TACGTACACG TAAGTATACT TTTAGGAACA AATCTAACAT CAGTGGAATA GAAGCAAATA
AAAGGATATA CCAGAGAATC ATGAATCTAG AGTGTTAACA TACTTTTGGC AAACATATAA TTTAAGTTGA GACTTTTAAC
TAAATGAACT ATACAATCAC ACACATACAT ACATATAAAT ATATAAATAC ATATACATAT ATGTACATAA ACATACGTAT
ACATATTATT CAAAAGAAGA CAAGTTGGTG AAAAGGAGAG TAGTATTTCT TAAATAAGAA ACTCCCTGTG CATATTGGGA
TATACGTAAT GAGAACACTT CTCATTTTTT GAACATAAGA ATCATTAAAT TTAGATTATA CGCATGGGTG GGATTTGAAT
GAATAACAAC ATTGGTAGGA TTTTTCAATG CAATCTTGCT TGTTTTCCGG AAGTATGTTA ATAGCTCTAG CTAGTTTCAG
ATTTGTTAAA ATATTTCTGA AGATGCAACT TGCGAATATA TTCTTTCTAG CCTTAGCAAT CTTCTAATCT TAATCCTCTT
TTATCAACAG TTAGGTGTGT CTGAGCTGAA AAACCAGATA GTTCTGTTGT TGATCACAAA ACCACAGTTA CTCAGCCCAG
TGGATATATT CTTACTTGTC CAGAAAACAT GCGATCATCC TCTGAATGAG TGGCTGAAGG AGAGTTATAA GATTGTGTGG
ATTCCCCTTC CATCTTCTGA TTCATGGACT GAAGCTGAAG AAAGTAGTTT TAATTTTCTA TCAGATTCCT TGCCTTGGCA
TGCTGTTCGG AAACCAAGGT TACTTAGCCC AGCAGTGGTC AAGTACATAA GGGAAAGATG GAACTACAAG GATGAGCCCA
TCATGGTGGC TCTAGATTCG AAAGGGAAGG TCACAAATTA CAATGCTCTT GATATGATCA ACATTTGGGG AGCCAAAGCT
TACCCTTTTT CAGCTTCCAA AGAGGAAGAG CTGTGGCAAG ACCAAAATTT GACAATGCAA CTTTTGCTAG ATGAGATCAA
TCCTCTCCTT GCTTATTGGG TAGGAGTCTG ATTACAGCAT ATTTTCATGC AGATTTTAGC AGTTTAATTC AGTAATGTTA
CTAGATTTGA CATTGTACCA TGTGTCAGGT TGAGCAAGGC AAAAGTATTT GCCTTTATGG GAGTGAAAAC TTGGTTTGGA
TCCAACAATT CAATGATAAG ATAACTGAGC TCAAACGAGC AGGTCTGCAG CTGGAAACAA TATATGTTGG TAATAGTCAA
TTGGGTGAAC ATGTTAAGCA AATAATGGCA AGAAGTGGTG CAACAAGTCG CAGTGATCCA CTTTCCTTCA CAAACGTGCA
ATTCTTCTGG CTTCGGTTGG CGAGTATGTT AAGGTCTAAA CTCAGACTAG GGAAGACACC AAGTGGTGAT TATGTACTAG
CAGAGTTGTC AGCTTTGCTT AAAATGGATG ATAGGGAGGA AGGTTGGGCA GTGATTGGAA GTGGGGGTTC AACAGATATT
ATCAGGCTTC GAGGGATGCA GGTGATGGAA TTCTTAAGGA AATGTTCTGT GTGGAGAGAA AATATAACCA AGTTTGGATT
GTGGGGTGCT CCAACAAACA TCCTAGAAGC TGATTTTGTT GAGGGGAGTT GCACTCACTC TTACTTTGTT CCCTCAAGAA
AAAATGGAAG ACTGAGTCAA GGAACTGTAA TTTGTCAAGT GTGCAAGCGT CCCATGAAGA AGTTCGTGGT GTACAAGCCA
TGAATCAGAG ACATACAATA GGTGAATTGA ACTGTGTATT GTTGTGCATG ACTAAGCAAG AACAGATATA GAGGAGCGTA
AGCAAACCAA GAGGAGTGGA GTGCAGGCAA AACCAATTAA ATTTTATTTT TTTGAATCGA TTTTGTCTAG TTTAATTAAT
AGTTGAGTGC TTTAATTTTT TGAAGTGGTA TGAATGTCAC GTCCTAACGA CCGAGACAAA TTACATTTTC GCATTTCATG
TGTTTTTATT TGTATTTCTG TTTGGTGAAC ACTATAACAA TGATACATTT TTACGGAAGT AGTCTTTGGA ATTCATACCA
AGAACAAG

>Vigan.04G422600.01
TAAACATAAT AAGAATACTT CAATAGACAC ATATTGATGG TTCCCATCAT CTTTCTGTTT TGATCAAAAG AATATAAATA
TAGCTACAGA ATTATCCAAT GATAGCAGAA TCTCGTAAAT TTTGCAGTGT GGCAAGCTCA TGTGGTGCAT TTCAACCTTG
AGTTCCTTTT TTCTTTCTCA ATTTGAAACA TGCAACGTGA TAATCTTATA AAGAAGCTCC TCCTTACACA TGATCCAGAT
GGTCGTAGGT TGGATTCTGA GGCAATTCTT CTTGCAGTGG GCAACATTAT GTTTCATTCT TCCAAAATAA TAGTGACTTG
TAATTTATAT TCTGCTTCCT TTCATAAGAC GGATATAACT GAAATTGAAA CGATTGGTTG TAGTGAATCG GTAGGATTCA
TCATCACAAA AATATGCAAG ATGCTCTGCA GATGCTCTGG TGAAGGTGAT ATTAACTCAA GGGTCATAAA TTTGTTTGAT
TTGATAGGGA AGTATAGCTG GGACGCAAAA GTAGTTCTAG TGCTTGCTGC TTTTGCTGTA AGATATGGTG AATTTTGGCA
ACTTATGCAG CTACATTATG ATAACAGTTT GGCAGCTTTA ATTTCAAGTA TTAAGAAGCT TCCCTGCAAC TTAAAGCCAC
TGAAGCTACA AATCAAGGCA TTGAGCTTGT TGGTTGAGAC CATGATGGAT GTGGCTATGT GTATAATTAA GTTTGAATAC
TTGCCTCTTC AACATGTTGA GCATGGAGAT CATATATTCC GTGTCACAAA GTCTCAAATA TACGAAGCTG CATACTGGAT
CGCCAGAAGC TGTTTAGCAT GTTTTTCCCA AGTCAAGGAC TTCACAACCA AGCAACATGA GCAAGTGTAC TCAGATTCAG
CAATAATTGC TGCTTGGGAG CTTTCAAGTT TGGCGTATAG ATTAAGTGGC ACACGCTGCA ATCTTAGAAG ACAGGTGGAT
CTGTGTTACG AAGAAATAGA GAGAAACTTG TATCAGAGGC TGTCGGATCT TGCTCGTGAG GAGCACATTG ATAATCAAAA
GATTCTCACT TTATTTTTTC CTTCAAATAA TTACTTGCCA CTGAAGGATT GCTCAACAGA AGTAAAGTTA GGTGTGTCTG
AGCTGAAAAA CCAGATAGTT CTGTTGTTGA TCACAAAACC ACAGTTACTC AGCCCAGTGG ATATATTCTT ACTTGTCCAG
AAAACATGCG ATCATCCTCT GAATGAGTGG CTGAAGGAGA GTTATAAGAT TGTGTGGATT CCCCTTCCAT CTTCTGATTC
ATGGACTGAA GCTGAAGAAA GTAGTTTTAA TTTTCTATCA GATTCCTTGC CTTGGCATGC TGTTCGGAAA CCAAGGTTAC
TTAGCCCAGC AGTGGTCAAG TACATAAGGG AAAGATGGAA CTACAAGGAT GAGCCCATCA TGGTGGCTCT AGATTCGAAA
GGGAAGGTCA CAAATTACAA TGCTCTTGAT ATGATCAACA TTTGGGGAGC CAAAGCTTAC CCTTTTTCAG CTTCCAAAGA
GGAAGAGCTG TGGCAAGACC AAAATTTGAC AATGCAACTT TTGCTAGATG AGATCAATCC TCTCCTTGCT TATTGGGTTG
AGCAAGGCAA AAGTATTTGC CTTTATGGGA GTGAAAACTT GGTTTGGATC CAACAATTCA ATGATAAGAT AACTGAGCTC
AAACGAGCAG GTCTGCAGCT GGAAACAATA TATGTTGGTA ATAGTCAATT GGGTGAACAT GTTAAGCAAA TAATGGCAAG
AAGTGGTGCA ACAAGTCGCA GTGATCCACT TTCCTTCACA AACGTGCAAT TCTTCTGGCT TCGGTTGGCG AGTATGTTAA
GGTCTAAACT CAGACTAGGG AAGACACCAA GTGGTGATTA TGTACTAGCA GAGTTGTCAG CTTTGCTTAA AATGGATGAT
AGGGAGGAAG GTTGGGCAGT GATTGGAAGT GGGGGTTCAA CAGATATTAT CAGGCTTCGA GGGATGCAGG TGATGGAATT
CTTAAGGAAA TGTTCTGTGT GGAGAGAAAA TATAACCAAG TTTGGATTGT GGGGTGCTCC AACAAACATC CTAGAAGCTG
ATTTTGTTGA GGGGAGTTGC ACTCACTCTT ACTTTGTTCC CTCAAGAAAA AATGGAAGAC TGAGTCAAGG AACTGTAATT
TGTCAAGTGT GCAAGCGTCC CATGAAGAAG TTCGTGGTGT ACAAGCCATG AATCAGAGAC ATACAATAGG TGAATTGAAC
TGTGTATTGT TGTGCATGAC TAAGCAAGAA CAGATATAGA GGAGCGTAAG CAAACCAAGA GGAGTGGAGT GCAGGCAAAA
CCAATTAAAT TTTATTTTTT TGAATCGATT TTGTCTAGTT TAATTAATAG TTGAGTGCTT TAATTTTTTG AAGTGGTATG
AATGTCACGT CCTAACGACC GAGACAAATT ACATTTTCGC ATTTCATGTG TTTTTATTTG TATTTCTGTT TGGTGAACAC
TATAACAATG ATACATTTTT ACGGAAGTAG TCTTTGGAAT TCATACCAAG AACAAG

>Vigan.04G422600.01
ATGCAACGTG ATAATCTTAT AAAGAAGCTC CTCCTTACAC ATGATCCAGA TGGTCGTAGG TTGGATTCTG AGGCAATTCT
TCTTGCAGTG GGCAACATTA TGTTTCATTC TTCCAAAATA ATAGTGACTT GTAATTTATA TTCTGCTTCC TTTCATAAGA
CGGATATAAC TGAAATTGAA ACGATTGGTT GTAGTGAATC GGTAGGATTC ATCATCACAA AAATATGCAA GATGCTCTGC
AGATGCTCTG GTGAAGGTGA TATTAACTCA AGGGTCATAA ATTTGTTTGA TTTGATAGGG AAGTATAGCT GGGACGCAAA
AGTAGTTCTA GTGCTTGCTG CTTTTGCTGT AAGATATGGT GAATTTTGGC AACTTATGCA GCTACATTAT GATAACAGTT
TGGCAGCTTT AATTTCAAGT ATTAAGAAGC TTCCCTGCAA CTTAAAGCCA CTGAAGCTAC AAATCAAGGC ATTGAGCTTG
TTGGTTGAGA CCATGATGGA TGTGGCTATG TGTATAATTA AGTTTGAATA CTTGCCTCTT CAACATGTTG AGCATGGAGA
TCATATATTC CGTGTCACAA AGTCTCAAAT ATACGAAGCT GCATACTGGA TCGCCAGAAG CTGTTTAGCA TGTTTTTCCC
AAGTCAAGGA CTTCACAACC AAGCAACATG AGCAAGTGTA CTCAGATTCA GCAATAATTG CTGCTTGGGA GCTTTCAAGT
TTGGCGTATA GATTAAGTGG CACACGCTGC AATCTTAGAA GACAGGTGGA TCTGTGTTAC GAAGAAATAG AGAGAAACTT
GTATCAGAGG CTGTCGGATC TTGCTCGTGA GGAGCACATT GATAATCAAA AGATTCTCAC TTTATTTTTT CCTTCAAATA
ATTACTTGCC ACTGAAGGAT TGCTCAACAG AAGTAAAGTT AGGTGTGTCT GAGCTGAAAA ACCAGATAGT TCTGTTGTTG
ATCACAAAAC CACAGTTACT CAGCCCAGTG GATATATTCT TACTTGTCCA GAAAACATGC GATCATCCTC TGAATGAGTG
GCTGAAGGAG AGTTATAAGA TTGTGTGGAT TCCCCTTCCA TCTTCTGATT CATGGACTGA AGCTGAAGAA AGTAGTTTTA
ATTTTCTATC AGATTCCTTG CCTTGGCATG CTGTTCGGAA ACCAAGGTTA CTTAGCCCAG CAGTGGTCAA GTACATAAGG
GAAAGATGGA ACTACAAGGA TGAGCCCATC ATGGTGGCTC TAGATTCGAA AGGGAAGGTC ACAAATTACA ATGCTCTTGA
TATGATCAAC ATTTGGGGAG CCAAAGCTTA CCCTTTTTCA GCTTCCAAAG AGGAAGAGCT GTGGCAAGAC CAAAATTTGA
CAATGCAACT TTTGCTAGAT GAGATCAATC CTCTCCTTGC TTATTGGGTT GAGCAAGGCA AAAGTATTTG CCTTTATGGG
AGTGAAAACT TGGTTTGGAT CCAACAATTC AATGATAAGA TAACTGAGCT CAAACGAGCA GGTCTGCAGC TGGAAACAAT
ATATGTTGGT AATAGTCAAT TGGGTGAACA TGTTAAGCAA ATAATGGCAA GAAGTGGTGC AACAAGTCGC AGTGATCCAC
TTTCCTTCAC AAACGTGCAA TTCTTCTGGC TTCGGTTGGC GAGTATGTTA AGGTCTAAAC TCAGACTAGG GAAGACACCA
AGTGGTGATT ATGTACTAGC AGAGTTGTCA GCTTTGCTTA AAATGGATGA TAGGGAGGAA GGTTGGGCAG TGATTGGAAG
TGGGGGTTCA ACAGATATTA TCAGGCTTCG AGGGATGCAG GTGATGGAAT TCTTAAGGAA ATGTTCTGTG TGGAGAGAAA
ATATAACCAA GTTTGGATTG TGGGGTGCTC CAACAAACAT CCTAGAAGCT GATTTTGTTG AGGGGAGTTG CACTCACTCT
TACTTTGTTC CCTCAAGAAA AAATGGAAGA CTGAGTCAAG GAACTGTAAT TTGTCAAGTG TGCAAGCGTC CCATGAAGAA
GTTCGTGGTG TACAAGCCAT GA

>Vigan.04G422600.01
MQRDNLIKKL LLTHDPDGRR LDSEAILLAV GNIMFHSSKI IVTCNLYSAS FHKTDITEIE TIGCSESVGF IITKICKMLC
RCSGEGDINS RVINLFDLIG KYSWDAKVVL VLAAFAVRYG EFWQLMQLHY DNSLAALISS IKKLPCNLKP LKLQIKALSL
LVETMMDVAM CIIKFEYLPL QHVEHGDHIF RVTKSQIYEA AYWIARSCLA CFSQVKDFTT KQHEQVYSDS AIIAAWELSS
LAYRLSGTRC NLRRQVDLCY EEIERNLYQR LSDLAREEHI DNQKILTLFF PSNNYLPLKD CSTEVKLGVS ELKNQIVLLL
ITKPQLLSPV DIFLLVQKTC DHPLNEWLKE SYKIVWIPLP SSDSWTEAEE SSFNFLSDSL PWHAVRKPRL LSPAVVKYIR
ERWNYKDEPI MVALDSKGKV TNYNALDMIN IWGAKAYPFS ASKEEELWQD QNLTMQLLLD EINPLLAYWV EQGKSICLYG
SENLVWIQQF NDKITELKRA GLQLETIYVG NSQLGEHVKQ IMARSGATSR SDPLSFTNVQ FFWLRLASML RSKLRLGKTP
SGDYVLAELS ALLKMDDREE GWAVIGSGGS TDIIRLRGMQ VMEFLRKCSV WRENITKFGL WGAPTNILEA DFVEGSCTHS
YFVPSRKNGR LSQGTVICQV CKRPMKKFVV YKP*