Variant information

Chr04:53116314 - 53120161

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53116556TC431790.771.00DOWNSTREAM(|4044||None|Vigan.04G422700.01), DOWNSTREAM(|4262||None|Vigan.04G422800.01), SYNONYMOUS_CODING(SILENT|ggT/ggC|G18|None|Vigan.04G422600.01)Vigna nepalensis
53116638TC421867.771.00DOWNSTREAM(|3962||None|Vigan.04G422700.01), DOWNSTREAM(|4180||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53116643AT421853.771.00DOWNSTREAM(|3957||None|Vigan.04G422700.01), DOWNSTREAM(|4175||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53116740GC501940.771.00DOWNSTREAM(|3860||None|Vigan.04G422700.01), DOWNSTREAM(|4078||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53116781CT411631.771.00DOWNSTREAM(|3819||None|Vigan.04G422700.01), DOWNSTREAM(|4037||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53116952AC562213.771.00DOWNSTREAM(|3648||None|Vigan.04G422700.01), DOWNSTREAM(|3866||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53117140GA692661.771.00DOWNSTREAM(|3460||None|Vigan.04G422700.01), DOWNSTREAM(|3678||None|Vigan.04G422800.01), SYNONYMOUS_CODING(SILENT|caG/caA|Q127|None|Vigan.04G422600.01)Vigna nepalensis
53117547AT492177.771.00DOWNSTREAM(|3053||None|Vigan.04G422700.01), DOWNSTREAM(|3271||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53117551GT492207.771.00DOWNSTREAM(|3049||None|Vigan.04G422700.01), DOWNSTREAM(|3267||None|Vigan.04G422800.01), INTRON(|||None|Vigan.04G422600.01)Vigna nepalensis
53119128AT552190.771.00DOWNSTREAM(|1472||None|Vigan.04G422700.01), DOWNSTREAM(|1690||None|Vigan.04G422800.01), NON_SYNONYMOUS_CODING(MISSENSE|tAt/tTt|Y468F|None|Vigan.04G422600.01)Vigna nepalensis
53119344TC682661.771.00DOWNSTREAM(|1256||None|Vigan.04G422700.01), DOWNSTREAM(|1474||None|Vigan.04G422800.01), SYNONYMOUS_CODING(SILENT|ggT/ggC|G510|None|Vigan.04G422600.01)Vigna nepalensis
53119400GA612405.771.00DOWNSTREAM(|1200||None|Vigan.04G422700.01), DOWNSTREAM(|1418||None|Vigan.04G422800.01), NON_SYNONYMOUS_CODING(MISSENSE|aGt/aAt|S529N|None|Vigan.04G422600.01)Vigna nepalensis
53119551GA612449.771.00DOWNSTREAM(|1049||None|Vigan.04G422700.01), DOWNSTREAM(|1267||None|Vigan.04G422800.01), SYNONYMOUS_CODING(SILENT|gaG/gaA|E579|None|Vigan.04G422600.01)Vigna nepalensis
53119905AG431775.771.00DOWNSTREAM(|695||None|Vigan.04G422700.01), DOWNSTREAM(|913||None|Vigan.04G422800.01), UTR_3_PRIME(|69||None|Vigan.04G422600.01)Vigna nepalensis
53119929GA421760.771.00DOWNSTREAM(|671||None|Vigan.04G422700.01), DOWNSTREAM(|889||None|Vigan.04G422800.01), UTR_3_PRIME(|93||None|Vigan.04G422600.01)Vigna nepalensis
53120150AG572368.771.00DOWNSTREAM(|450||None|Vigan.04G422700.01), DOWNSTREAM(|668||None|Vigan.04G422800.01), UTR_3_PRIME(|314||None|Vigan.04G422600.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
53116462AATTTCAACCTTG401826.731.00DOWNSTREAM(|4137||None|Vigan.04G422700.01), DOWNSTREAM(|4355||None|Vigan.04G422800.01), UTR_5_PRIME(|40||None|Vigan.04G422600.01)Vigna nepalensis
53119959AAT371149.731.00DOWNSTREAM(|640||None|Vigan.04G422700.01), DOWNSTREAM(|858||None|Vigan.04G422800.01), UTR_3_PRIME(|124||None|Vigan.04G422600.01)Vigna nepalensis