GBrowse Details

Vigan.04G366700.01

Basic Information:
Name: Vigan.04G366700.01
Multiple alignment
Variant Information
Position: Chr04:48595118..48597432 (+ strand)
Length: 2315
Functional Information:
Description: Similar to ADP-ribosylation factor GTPase-activating protein AGD11-like protein. [T2DLR6, Phaseolus vulgaris]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: C2 domain (IPR000008)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.49,5.30,20.22,16.85,12.99,23.65,39.66,14.15
Automatic updates:
Name: NM_001248586 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein C2-DOMAIN ABA-RELATED 4-like (LOC100306214), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48595118..48595186 (+ strand)
Length: 69
Type: five_prime_UTR
Position: Chr04:48595187..48595297 (+ strand)
Length: 111
Type: CDS
Position: Chr04:48596344..48596439 (+ strand)
Length: 96
Type: CDS
Position: Chr04:48596771..48597061 (+ strand)
Length: 291
Type: CDS
Position: Chr04:48597062..48597432 (+ strand)
Length: 371
Type: three_prime_UTR

>Vigan.04G366700.01 class=Sequence position=Chr04:48595118..48597432 (+ strand)
GGGGTTCCTA TTACCATTTG CTCTGTCTTG AAAAATTCCA TTTTTCTTCT TTTCCTCACA CATTTAGTTA TGGAGGACTT
GCTGGGTCTG TTGAGAATTC ATGTTGAGAA AGGTGTCAAT CTTGCAATCA GGGATGTGGT GAGCAGTGAT CCTTATGTTG
TCATCAAAAT GGGCAAGCAG GTACCATTTT CTCCACTTTT GTTATCATCA ATTTTCTCAC TTTCTTTCAT CTTTTGTTTC
TGGGACATGT TCCTGAAGGT GTTGACTTGT TCTGTTATTT TTTCTCTTGA TTTCCTTTTT CTATTCTTAA TCCCTTTTTC
TTGTGTTCTT CTTTCATCTT ATTCTCTGTT TCTCATCCCC CTCTTTTGTT AGCAGCTCTG ACTCTGATGC ATGCTCATTT
TTCTTGACTA AAAATGGAGT ATGTATTTCA TTTTTCGTGT CATCTCACTA TCCGCCATAG ATGGTTCTAG AACTTTGTTG
GAAAACAAGA TGAATTTAAA ACCATTAACA TAATATATAA TATATCTGTA AGTAAACAAT TTTTAGAGAA ATTGACTAAT
TCAAGTTGGA AGCTCATAGT CTCCCACCCT TACATCCTTC CATCTAGAGA CTAAATCTGA AAATTTGCAA CTTGCCTGTA
CAGTAAGTGA GGAAGATAAG CCAAACCAAC AAGTCCAGTA ATGACAGATT AAAATAAATA AAGAATTGTT ACAAAGATAT
GAAACCTTGG AAATATTAAA ATATTTTCAA CAAACAGTTT ACTTTGGGTT AAAAACTTAC ACTCATGGAT GTGGCCGGCA
TATAAATTAT AATAAATTTT GTCTAAGCTG TTTTTGGTCA GCTAAATGAG TGTTGACCCT CTTCTCTTAT TTTTTTGCGG
TTGCTTTCTA ATAAAAGAGT GAGGATAAAA TTTGTGTACA TCCCAAAGTA GCCTTTTCTG TCTTCTTTTG TTGGTTTTTT
CACTAAAACT AGATTCTCCT CTAGTCATCA CAACTCAATA ACTTAAATAT GGATATGCAG AAAAGTTAAT ATGTATTGGC
TAATTAAGTG GATATCCTAA ATTTCTGTCT ACCAGAAGTT AGAATATTCC GTGTAATTAA TTGTGTTTTT CCAAGTTTTG
GGTTGTTACA TGACATTAAA CAGTAGAGGG CAGAATGAAA CCTTTTGTTT TTTTGTTGTT GTTGTCTACA CATCCATCTC
ATTGCTACAT TTTATGTCTC ATGCAGAAGC TGAAGACTCG GGTGGTTAAA AAGAATTTAA ATCCTGAATG GAATGATGAC
TTGACCCTGT CTATTTCAGA TCCTCATGCT CCAGTCCATT TAGTAAGTAA CTCTTTCTAT AATGTCTGTG TTTCAAATTT
CAATACAATA CCCGAGAGCA AAACTTGGGT ACAAAATTAA AGCTTCATAG ACAGACCATC TGAAGCAATC ATGTTAAATA
CACATAGTAC TCTGAACAAT AAGGCCATAT GAATATTGTC ATAGCACAAA GATGTTGAAC TTTGGGGTCT ATGAACAATA
ACTTATGAGT GCTTTTCTGA AACAATGCTT AGTCTTGTTT GTTGCTTGGT GTGCACAGGG GAGATCATGG AGATATGAAT
TAATTCAATA TATCAGCAAA AACTAGAAAT AATGTTATTG TGTTTTGATG CAGCATGTGT ATGACAAGGA CACATTCAGC
TTAGATGACA AAATGGGGGA TGCTGATTTT TCCATTGGTC CATTCATTGA AGCAGTGAAG ATGCGCTTGA CAGGTCTCCC
CAACAATACC ATAGTTACAA AAGTGTTGCC TAGCAGACAA AACTGCTTAG CTGAAGAGAG TCACATTGTG TGGAAGGATG
GCAAAGTTGT GCAAAACCTG GTTCTTAGAC TAAGAAATGT AGAGTGTGGG GAGGTGGAAC TCCAGTTGAA TTGGATTGAC
ATTCCTGGTT CAAGGCATCT CTAGATCACA GTCCAAGACT TGGCATATTG TAAAGTTTAG ACTTGCAGCC TCATAAACCA
GCAACACCTT ATGTTTTATA TTATGCTATC TTTTACTCTT TCGCACAACT ATGGTGTTGC AATTAGTAGT AATTAGTGAA
GAAGAATGGG AGAGGTTGTT TCCCTAGCTA TAATTTAGAA TCATCTCCTA GTTCCGTGTA ATAATGTGCA AGAAACGTAG
CATATAGATT TTGCACATAC TATGTTAGTC GCTAGTCATA TATCAGTTTT TTCTATATTG ATTGTTTGGA CATTTATTGG
TACTATATGG TTTATATGAT ATACTTAGGT AAATCACATG CCAATGTTAG AGTAGAAATA TCACCTTTAC TTTAT

>Vigan.04G366700.01
GGGGTTCCTA TTACCATTTG CTCTGTCTTG AAAAATTCCA TTTTTCTTCT TTTCCTCACA CATTTAGTTA TGGAGGACTT
GCTGGGTCTG TTGAGAATTC ATGTTGAGAA AGGTGTCAAT CTTGCAATCA GGGATGTGGT GAGCAGTGAT CCTTATGTTG
TCATCAAAAT GGGCAAGCAG AAGCTGAAGA CTCGGGTGGT TAAAAAGAAT TTAAATCCTG AATGGAATGA TGACTTGACC
CTGTCTATTT CAGATCCTCA TGCTCCAGTC CATTTACATG TGTATGACAA GGACACATTC AGCTTAGATG ACAAAATGGG
GGATGCTGAT TTTTCCATTG GTCCATTCAT TGAAGCAGTG AAGATGCGCT TGACAGGTCT CCCCAACAAT ACCATAGTTA
CAAAAGTGTT GCCTAGCAGA CAAAACTGCT TAGCTGAAGA GAGTCACATT GTGTGGAAGG ATGGCAAAGT TGTGCAAAAC
CTGGTTCTTA GACTAAGAAA TGTAGAGTGT GGGGAGGTGG AACTCCAGTT GAATTGGATT GACATTCCTG GTTCAAGGCA
TCTCTAGATC ACAGTCCAAG ACTTGGCATA TTGTAAAGTT TAGACTTGCA GCCTCATAAA CCAGCAACAC CTTATGTTTT
ATATTATGCT ATCTTTTACT CTTTCGCACA ACTATGGTGT TGCAATTAGT AGTAATTAGT GAAGAAGAAT GGGAGAGGTT
GTTTCCCTAG CTATAATTTA GAATCATCTC CTAGTTCCGT GTAATAATGT GCAAGAAACG TAGCATATAG ATTTTGCACA
TACTATGTTA GTCGCTAGTC ATATATCAGT TTTTTCTATA TTGATTGTTT GGACATTTAT TGGTACTATA TGGTTTATAT
GATATACTTA GGTAAATCAC ATGCCAATGT TAGAGTAGAA ATATCACCTT TACTTTAT

>Vigan.04G366700.01
ATGGAGGACT TGCTGGGTCT GTTGAGAATT CATGTTGAGA AAGGTGTCAA TCTTGCAATC AGGGATGTGG TGAGCAGTGA
TCCTTATGTT GTCATCAAAA TGGGCAAGCA GAAGCTGAAG ACTCGGGTGG TTAAAAAGAA TTTAAATCCT GAATGGAATG
ATGACTTGAC CCTGTCTATT TCAGATCCTC ATGCTCCAGT CCATTTACAT GTGTATGACA AGGACACATT CAGCTTAGAT
GACAAAATGG GGGATGCTGA TTTTTCCATT GGTCCATTCA TTGAAGCAGT GAAGATGCGC TTGACAGGTC TCCCCAACAA
TACCATAGTT ACAAAAGTGT TGCCTAGCAG ACAAAACTGC TTAGCTGAAG AGAGTCACAT TGTGTGGAAG GATGGCAAAG
TTGTGCAAAA CCTGGTTCTT AGACTAAGAA ATGTAGAGTG TGGGGAGGTG GAACTCCAGT TGAATTGGAT TGACATTCCT
GGTTCAAGGC ATCTCTAG

>Vigan.04G366700.01
MEDLLGLLRI HVEKGVNLAI RDVVSSDPYV VIKMGKQKLK TRVVKKNLNP EWNDDLTLSI SDPHAPVHLH VYDKDTFSLD
DKMGDADFSI GPFIEAVKMR LTGLPNNTIV TKVLPSRQNC LAEESHIVWK DGKVVQNLVL RLRNVECGEV ELQLNWIDIP
GSRHL*