Variant information

Chr04:48595118 - 48597432

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
48595138CT451819.771.00UPSTREAM(|2892||None|Vigan.04G366800.01), UTR_5_PRIME(|49||None|Vigan.04G366700.01)Vigna nepalensis
48595193GA572218.771.00NON_SYNONYMOUS_CODING(MISSENSE|Gac/Aac|D3N|None|Vigan.04G366700.01), UPSTREAM(|2837||None|Vigan.04G366800.01)Vigna nepalensis
48595208TC622454.771.00SYNONYMOUS_CODING(SILENT|Ttg/Ctg|L8|None|Vigan.04G366700.01), UPSTREAM(|2822||None|Vigan.04G366800.01)Vigna nepalensis
48595320TG532120.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2710||None|Vigan.04G366800.01)Vigna nepalensis
48595438TG622437.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2592||None|Vigan.04G366800.01)Vigna nepalensis
48595651AC592358.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2379||None|Vigan.04G366800.01)Vigna nepalensis
48595670TC552220.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2360||None|Vigan.04G366800.01)Vigna nepalensis
48595884GA512105.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2146||None|Vigan.04G366800.01)Vigna nepalensis
48596014GA692703.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2016||None|Vigan.04G366800.01)Vigna nepalensis
48596062CA773028.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1968||None|Vigan.04G366800.01)Vigna nepalensis
48596095CG723311.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1935||None|Vigan.04G366800.01)Vigna nepalensis
48596106CT723211.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1924||None|Vigan.04G366800.01)Vigna nepalensis
48596193AT703332.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1837||None|Vigan.04G366800.01)Vigna nepalensis
48596624GT572169.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1406||None|Vigan.04G366800.01)Vigna nepalensis
48596712AT552245.771.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1318||None|Vigan.04G366800.01)Vigna nepalensis
48597022GC441815.771.00NON_SYNONYMOUS_CODING(MISSENSE|caG/caC|Q153H|None|Vigan.04G366700.01), UPSTREAM(|1008||None|Vigan.04G366800.01)Vigna nepalensis
48597146TC552461.771.00UPSTREAM(|884||None|Vigan.04G366800.01), UTR_3_PRIME(|85||None|Vigan.04G366700.01)Vigna nepalensis
48597154TA582557.771.00UPSTREAM(|876||None|Vigan.04G366800.01), UTR_3_PRIME(|93||None|Vigan.04G366700.01)Vigna nepalensis
48597207GA552163.771.00UPSTREAM(|823||None|Vigan.04G366800.01), UTR_3_PRIME(|146||None|Vigan.04G366700.01)Vigna nepalensis
48597227AG622370.771.00UPSTREAM(|803||None|Vigan.04G366800.01), UTR_3_PRIME(|166||None|Vigan.04G366700.01)Vigna nepalensis
48597278CG662653.771.00UPSTREAM(|752||None|Vigan.04G366800.01), UTR_3_PRIME(|217||None|Vigan.04G366700.01)Vigna nepalensis
48597305GA632591.771.00UPSTREAM(|725||None|Vigan.04G366800.01), UTR_3_PRIME(|244||None|Vigan.04G366700.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
48595121GGT411424.731.00UPSTREAM(|2908||None|Vigan.04G366800.01), UTR_5_PRIME(|65||None|Vigan.04G366700.01)Vigna nepalensis
48595381GAG642524.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2648||None|Vigan.04G366800.01)Vigna nepalensis
48596029TTTC683143.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|2000||None|Vigan.04G366800.01)Vigna nepalensis
48596123AATATGGA743337.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1906||None|Vigan.04G366800.01)Vigna nepalensis
48596189CCG713179.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1840||None|Vigan.04G366800.01)Vigna nepalensis
48596199GAATATTCCGTGTAATTAATG703111.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1830||None|Vigan.04G366800.01)Vigna nepalensis
48596289TTTGT552399.731.00INTRON(|||None|Vigan.04G366700.01), UPSTREAM(|1740||None|Vigan.04G366800.01)Vigna nepalensis