GBrowse Details

Vigan.04G354600.01

Basic Information:
Name: Vigan.04G354600.01
Multiple alignment
Variant Information
Position: Chr04:47566909..47574069 (+ strand)
Length: 7161
Functional Information:
Description: Similar to deoxyribonuclease TATDN1-like. [XP_004494257.1, Cicer arietinum]
GO: Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888)
InterPro: TatD family (IPR001130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.73,6.55,4.80,5.34,7.24,3.60,6.06,4.68
Arabidopsis thaliana homolog: AT3G52390.2
Automatic updates:
Name: NM_001254631 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative deoxyribonuclease TATDN1-like (LOC100814321), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47566909..47566979 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr04:47566980..47567001 (+ strand)
Length: 22
Type: CDS
Position: Chr04:47567089..47567109 (+ strand)
Length: 21
Type: CDS
Position: Chr04:47567179..47567279 (+ strand)
Length: 101
Type: CDS
Position: Chr04:47567575..47567632 (+ strand)
Length: 58
Type: CDS
Position: Chr04:47567723..47567766 (+ strand)
Length: 44
Type: CDS
Position: Chr04:47567835..47567915 (+ strand)
Length: 81
Type: CDS
Position: Chr04:47568147..47568217 (+ strand)
Length: 71
Type: CDS
Position: Chr04:47568338..47568448 (+ strand)
Length: 111
Type: CDS
Position: Chr04:47568875..47568957 (+ strand)
Length: 83
Type: CDS
Position: Chr04:47569352..47569568 (+ strand)
Length: 217
Type: CDS
Position: Chr04:47569852..47569935 (+ strand)
Length: 84
Type: CDS
Position: Chr04:47573427..47573493 (+ strand)
Length: 67
Type: CDS
Position: Chr04:47573494..47574069 (+ strand)
Length: 576
Type: three_prime_UTR

>Vigan.04G354600.01 class=Sequence position=Chr04:47566909..47574069 (+ strand)
CTCCTTCTTC CATTTACCAA CGAACTAAAC TCCACTTGCT CCTCACTGTT GAGCACGCAA GCCAACCAAT CATGGCAGGC
ATTCGAATGA TAGGTAAGTA ACACGCTTCC TCACTTTTCG ATTCAGATTC TAATTCAAGT GAATTAACCA TTTTTTGTTC
TACAACGAAC ACAAATGCAG ATATAGCCGT CAATTTCACC GGTGAGGCAT TTCATCAAAC ATTTTTTGTT CGTCATTCGC
CTATTCTCTA TCTAATTCCA AAAACTGCAG ATGGCATGTT CAAGGGAATC TACCACGGCA AGCAATGTCA CGTCTCCGAT
ATTGCAACCG TTTTGAACAG GGCTTGGGCT GCTGGCGTCA CCCGAATTAT TGTAATGTTT TCTTAACCAA CCTTTCATGT
CTGTAATGTC AAATTTTATT ACGAATGTTA GTTTTGCTTT AATCATTAAT TGAGCAAATT AAGAGAAATT CAGAGTTATG
AAATTGAAAG TTTAAGAAGA TATTATATGT TTCAATTGGG ACAACGAGAG ATGCTTCGGG TATTTAAATT TAAAGCTGTT
GATTGGACAA AGGATTTTTC GACACCAGTT TGATAACATA AATTATGAAC TGTGTTTTAT GTTTGAATAG TTTCTGGTCA
GTTAGGACTT GCTTTTTGTG TTGCAGGTAA CTGGTGGGTC TCTTGAAGAA TCAAGGGAAG CACTTGCAAT TGCAGAAACA
GATGGTTTGT CTTATTAACA TTGCTTTCTC TTGATGACTT TCAAATGAAG AATGTGGATT TTCACTAATT TGATGATTTA
TTGATCACTT ATAGGAAGAC TTTTCTGCAC CGTTGGTGTG CATCCAACAC GATGCAAGGT TGTTTTTCTC CTTTAGGAAC
TTTTCTATGG AAGTGTTTGT AACTATGACT TAGTCTATTG GTTCAGGAAT TTGAGGAGAG TGGAGATCCA GAGAAGCATT
TTCAAGCTCT TTTGTCCTTG GCTAAAGACG GAATTCAGAA AGGAAAGGTA TGGTTATACA CTTGTGGTAA GACAACTATC
AAACATCTCT AAATTTTAAC TAGACATCTA AGATCTGCAT AGTTGAGTTC CATCTCATTT GTAATAAACA TACTCACTAA
ACATTTTCAT TGTGTACGTT GTTCTCATAT AGTTGCAGAA CTTGTGTTCC TAGTTCAGAA ACTACCCAAG TACTTAGAAA
TAACTGTCAT ATCATATTTA CTTCTCTTCA TATGCAAGGT GGTTGCTATT GGAGAATGTG GATTGGACTA TGACAGGCTT
CATTTTTGCC CAGCAGAGAT TCAAAAGAAG TATGCAATCT CTCCATAGTC TCAATTAGAT ATGCCTCATA TTCGTTTTCT
CTTTTATTGA TTTTTGTAAT ATATTAAAAT CATCGACAAA TCATATTTTT TTTTATCTGT GAAAGCAAGG TATTTCGAGA
AGCAATTTGA ATTAGCACAT ACCACAAAAC TGCCTATGTT TTTGCACATG CGAGAAGCTG CTGCAGATTT CTGTGAAATA
GTGGAGAAAA ATAAGGACAG GTGAGATTGC TGGATCTCAC TGTTTTCAAA TTAATAAAGT TCTAATCCTG CAGCTTTAAT
TTATCTAATG GTTAGCTTAT CATTCTATTT ATTTTGTGAA GATGAATTTA ATTGTGAGAG TTGACTGTAC CATGGCCATC
TAGGCTGTGG TACTTCTGCT TTCAACTTCA GGAATGAAGG GGAAAATAAA TATAAACGGT TTAAGATCCC CTTATAGACA
ACGTGCAACA TTGAGGCCTT TGACAACACA CATGATACAA ACATTATTTG CAAAAATAGA ATAAGTAACA TTAAATTTTA
TATCTCGTTT ACCCATTTTT TGAGCTTAAT ATACGTCAGC GCATGTGTTT TATTCTATTC CTTGTATTTT ATGAGATAAT
CAATTCAAAA TGTAAGTTGT CTTAACCATT TTTACCTGTA CATCAGGTTC ACTGCCGGAG TCACCCATTC CTTTACTGGT
AGTATGGATG ATAGCATTAA GCTTCTCTCA TTTGATAAAA TGTACATAGG TAATTCACCT TTTGAAGGAT TACTTTTGAC
CAATTTGAAG TTACCTTGAT ATGTCTGATA TTAGGCTTTT CCTTTTCAAA GATAGGATTT TATTGTTCTA ATTGTAATTT
TGTTGAGATA AAAAGATGAA TATACCTTGA GAAAGATTTC TGTTTTCATA TCATTGGTTC TGATGTTTGG ATACTAAAAA
AAGAAAAGGA AACACAAAAA TAAACGTAAA ATTTATGAGT TCAATATGTA AAGGCTAATT ACGTGTTTCT GGAGAGGATA
TTGGTGTGTT TAATTTTCCT TGTTAAAAGT TGCACAAAAT TTCTGTTTCA GATATTGGAT TGTAGTGATT GAGTACTAGA
AATCCAGTTA AATCTCATCA ATATTACCTT GGTCCTGTGG CAGGCATAAA TGGGTGCTCT CTGAAGACAA CTGAGAACCT
TGATGTTGTT AAGGGTATAC CTATTGAAAG AATGATGATT GAGACAGACT CACCATACTG TGAAATCAAG AATACTCATG
CAGGAATTGG TTTTGTTAAA TCTACATGGC CTTCTAAGAA GAAAGAGAAG TATGATCAAG AGTGCATTGT TAAAGGCCGA
AATGAACCTT GTTTAGTTAA GTAAGTGGGA TGGTTTTGTT TAAGCTGGCT TGTGACAACT TCCTAGTTTA TTAACTGCTT
CAATATGGCT TTGGCACCAT AGCCACAAGG AATATCTTCT ATTCAATGTA ACTGTAGTTA GGAAATCAAT ATTCAAGTTT
ACTAGAATCG AAACCCTCGG CATGATTTGC TAGTTTTTTC CTTCTTGTTA CGTTATAAGA CTATCCTATA CTTATAACTA
AATGAATTTA ACATTATGCA TAGAATTATA CCTCTTCAAA TAATCATGAT TGCAATTTTT CAGGCAAGTT CTTGAAGTTG
TTGCTGGCTG TAAAGGCATC ACTGACGTGG CTAACCTCAG CAGAACAGTA TACCATAACA CTTGCAGGTA ACATAGCTTG
TCTCTAGACT TGGGTCTATT ACTGATGGAA GTAAGAACTT GTGCAATTAC TAGTCTTTGA TCATGCGCAG ATACAACATT
ATCAGATATG ACTCATCCAC CAATTTGTCA ATTCTTGAAA AGTATAGGAT ATGATATGTA TAGTATTCGT ATTGAAAATA
ATCAAATTAA GATATACTTC TATACTTCTT AAACATTGGT AAATATAAAA TAAAAATTAT AAATAACTGT TTTCCTAAAA
TCCAAACAAG AAACATACTT CTACATTACC AACTATAAAA TAGAAATTAC AAGTAATTTC TTAATTTCCC AGAAATAGGA
ATAGTACCAA TTTATTTTCT CGTTGTGCAT TATCTAGAAA TAGGATAATT TCGGTAACTA GCTATGTTTT TTCAAGAAAA
AAAGATTCCA TTTCAAGATT TCTAGCAGCA TCAAAGCTAT CTCGGCATAT GCATGACTCC ACCAGTGTCC AATGTCTTAG
TACTTCCATG CACGTATAAT TCATCTTTCA AAAATAAAAA TGCGTATTGT TACTATGGGC TTATAGCTGA CCGATCGGGT
AAGTGGCAAA ATAATTAGAA AGAACCGAGC AGTTGACATG CCACGAAAGC ATCTCTTGAA CGTTCGGTCC CGACAATCGT
TAAGCAGAGT TAAGACACAA TTAATGTCAC AACGGCTACT GTCAAGCGGT TAAGGTTTGC ATTAATGATC ATTAAGGGGT
AAATTAATTG GTCAGATTCT TTTAAATTCT ATGTTTAATT TCGAGGTAAA CTTACTTTTG ACTCACTATT GAATTACTAA
AGACCTACAG AGAAAGATTC TGACTTGAGC TTCGGAGTGT ATTCTGCAGG TCACCCCCCA CACAAGGACA AACGTTCGGC
ACACCGGAGC ATCACTTAGG CGACATCCTC GTCCCAATTC AACCGAAACA TTTTGGCGCT GCGCGACCGA TCGGTGTGTG
GGGGTGACCT GTAGAATACA CTCCGACGCT CAAGTTAGAA TCTTTCTTTG TAGGTCTTTA GTAATTCAAC GGTGAGTCAA
AAGTAAGTTT ACCTCGAAAT TAAACTCCTA TTTTATAGAG TTTAAAAGAA ACTGACCAAT TAATTTACCC CTTAATGATC
ATTAATGCAA ACCTTAACCG CTTGACAGTA GCCGTTGTGA CATTAATTGC GCCTTAACTC TACTTAATGG TTGTCGGGAC
CGAGCGGTCA AGAGATGCTT TCGTGGTATG TCAACCGCTC GGTTCTTTCC AATTATTTTG TCACTTACCC GATCAGTCAG
TTATAAGCCC ATAATAACAC TTATAAACCA ATTTTATGAT TTAACTTGTT TCTTTTGCAA TGGCAGAATG AAGAAACAGG
TAATCTAGTT CCTACGATAA TAACAATTGT CTTAATTGAG AAAAAAATAG TCAACTTATT TGTTTTTCAT GAGAAATTGA
CATATGCTAT TACATCCTTT TTTCTAATCT CAACGGTTGT AATTTTTTTT TAAACATTTA TTCCTCTCCA TAGAAATCTC
GTCAGCCTCT TGAAGTTATT CTTCACTATA ATTCCTACAA AAGTCAGTAG ATTACTTACA GGAGTTAACT AACTATATAT
TTACCTAGGA TTCAAATAGT GAATAATAGA GGGAAGTGCA ACTCTTGGTA TACCTATCAA TTAAGTCTAT AAACAACTTC
ATAAAACGTT GAAGTATCCT GTTCTCTTTT CCTTCATATT TGTACTCTCT GGACTCAAAT ATAAACGAAA ATGAGTCATA
TATGGTGGAT TCAAATATAA GCAAATTTCA ATTCCTAAAC CTTATTTAAT GTTCCCATTT AAAATAAAAA TGACTTTTAA
ACCTAAACAT AATTATCAAT AAATATAATT TGGGGGCAAT TTAGGAAAAA TATCACTCTA TTGTACGAAA AGAATAATAT
TAAATAAATT TGACTTATAA GTAGTATAAT TATAAGTGAT TAGATTATTA CTACAAGTAA TCTATTATCT TTTGCTGGAC
GAATAGGTAT TATAGTGAGA AGTGGCTCCA AATAGAATTT CCCCTTGAGG ATGATGAGAT TTTATTGTAA AGAAACAAGG
GTTTGAAAAT GTTTTTCACA ACTGTTGAGA ATAGAAAAAA TGTTGTACTT TAATATGACG ATATGATTCC TCGTATAAAG
AAAATAGTAT GCTTCCTTTG ACTCAAATGA AAATAGGTGG ACATTAGATT CTAAATCTTA ATGGGTGATG CGTGGTTCTC
TTGTCCTCTC CTTAAAAAGT TTGCTTTAGG GCCTATAGTG CACATCCTAG TTTCTATATT GTGAAAGGAA TTGGAGAACC
ATTCACTCAT CAAAGATAAA AATGTTGAAT CCCAAAAGCA CTGGGTTTAT GTGCATACTA ATTTGAAGCT TGTCTTGAAA
AAAGAATACA TGTATAAGGG AGTACATTCT CTAATATACA CACTTCATTG GCTCTTGAAA ATAAAAAAAT AGAAATGGTC
TTATTTACTA AAGGAGGGGA TGCAGTTAAT GCTATTCCTA TTTCTGGGCA ATAAGAAATC GAGAGTTCAC TAACAACTTT
TGTTTTATAT TTAGTTATGT CTAAGTCAGT TCTTTGTTTA GATTTTTGAA ACTCGGGTTT TCAATTTTTT TATTTTATTT
TAGACAAGGA ATGCTAGCTC TCAAACACTC TTTAATACTT TCTCTTCAAT TGGTCGAAAT TGTATGGAAA TCACAATTTT
AGGTGGGTCT CACTTCCAAA TCAAAAGAGA GACTCGTTAA ATGAGAAACG AGACTCGTAA AAGGTTGTGA TTTCTGATAA
ATTTCGGTTA ATAATATGGA GAATGTTGCT ACTATTCCTC ATTTTATGTT TATCTTGGTT TAGTAAGTAT GTTGTTAAGA
GATTTTTGAA TATGTATTCT AACCTTTATA TCTCTTAAGA ATTGACATAT CAACGTTATG TAATAGGGAA AGTTCTAGAA
CACTCTAACA TGCTCTTGTA TCAGTTAAAA AAGTTTTACA ATCGCAAAAA TTGGTAAAGA GAATCATTAA TTGTGGGGAG
ATGGCATATT CAAAAGATTA TGTTAGAGAG TATGTTGTTC GTATTTCATT GTGTGTTGTA TCTGATGCTC ATGTTGTATG
CCTATGATAA TCATAGGAAG AAAGTGAAAA TACAAATCTA GGTCATCAAT TTACATTAGG CTTGGCCAAA TTTGTCTCGG
ACTAGAAGAT TGACCTCATG CATATTTTTC TTTTTCAAAA AATTGAACTT AACTTATTGC TAAGTTGTTA GATGATTAAA
GTCTTGATTG ATGGGCAGCG TCTCGGACCA GTACTAGAAT ACCATCTAAT GATTTTGAAT ACCATGCTGC TTGCCAAATT
TGCTCGTGAC TCGTTGCCAT ATGGACTGTC TCTGTTGTTA TTCTGTAGGG TGTGCTTGTG CATATGTATA TTTTCCTAAT
ATGCGCTCTG GAGCTCCAAT AAAAATATTG CTTTGCAGGA TTTTTTTCCC TCATGACTTA GATTCTGCAG CTGATGCTCT
ACTAGCTGGC GGTAATCCTT CTTAAACAGA CCTGCCAGTG ACTTGACCTT TGCTTTTCTT CGGAGCTGTT CGGTAACCCA
TATCTGCATT TTCTTGAGAA AGCTAAGTGT CCTTGAAATG CAGCTGAGAT TGTCCGTCCA GTCCTCTTTG GGAAGTGACA
AATCAGAACT GATTCCCAGA GGTCGATCTG ATGAGTGTAT GACAAATTAT TTTATTGTAT TTTATTGTAT TTTAATGAGC
TTATAATGTG AAGAAACTGT GGTACTAAAC CAGAAGCCAA TAGGATTCGA TATGTCGTAT GGAGTGGATA TGTTTTTGTT
GGATGTCATG TTAAGAAGTA AATCGATGGA GGCTAATTGG TGGTCGATCT GCAGTCTCTT AAGTGCTGCT GCCTCCAAAC
ATTTTTGTTG CTTTTCACCT TTTTTTAAGT CAGTAGAGTT CCACTGCTCA AGCCTGGTGT AAGATGATGC AACAGTCACT
GTCATCGTCA TATCATGCTG TTTCAAAAAG TTATTAAATT AACTAATTAT AAAACCTGTT GTTGACAATG ATGGACATTG
ATCTGAAAAT GTGATATCGA GCAGAGCTAT CATGAAGGAA T

>Vigan.04G354600.01
CTCCTTCTTC CATTTACCAA CGAACTAAAC TCCACTTGCT CCTCACTGTT GAGCACGCAA GCCAACCAAT CATGGCAGGC
ATTCGAATGA TAGATATAGC CGTCAATTTC ACCGATGGCA TGTTCAAGGG AATCTACCAC GGCAAGCAAT GTCACGTCTC
CGATATTGCA ACCGTTTTGA ACAGGGCTTG GGCTGCTGGC GTCACCCGAA TTATTGTAAC TGGTGGGTCT CTTGAAGAAT
CAAGGGAAGC ACTTGCAATT GCAGAAACAG ATGGAAGACT TTTCTGCACC GTTGGTGTGC ATCCAACACG ATGCAAGGAA
TTTGAGGAGA GTGGAGATCC AGAGAAGCAT TTTCAAGCTC TTTTGTCCTT GGCTAAAGAC GGAATTCAGA AAGGAAAGGT
GGTTGCTATT GGAGAATGTG GATTGGACTA TGACAGGCTT CATTTTTGCC CAGCAGAGAT TCAAAAGAAG TATTTCGAGA
AGCAATTTGA ATTAGCACAT ACCACAAAAC TGCCTATGTT TTTGCACATG CGAGAAGCTG CTGCAGATTT CTGTGAAATA
GTGGAGAAAA ATAAGGACAG GTTCACTGCC GGAGTCACCC ATTCCTTTAC TGGTAGTATG GATGATAGCA TTAAGCTTCT
CTCATTTGAT AAAATGTACA TAGGCATAAA TGGGTGCTCT CTGAAGACAA CTGAGAACCT TGATGTTGTT AAGGGTATAC
CTATTGAAAG AATGATGATT GAGACAGACT CACCATACTG TGAAATCAAG AATACTCATG CAGGAATTGG TTTTGTTAAA
TCTACATGGC CTTCTAAGAA GAAAGAGAAG TATGATCAAG AGTGCATTGT TAAAGGCCGA AATGAACCTT GTTTAGTTAA
GCAAGTTCTT GAAGTTGTTG CTGGCTGTAA AGGCATCACT GACGTGGCTA ACCTCAGCAG AACAGTATAC CATAACACTT
GCAGGATTTT TTTCCCTCAT GACTTAGATT CTGCAGCTGA TGCTCTACTA GCTGGCGGTA ATCCTTCTTA AACAGACCTG
CCAGTGACTT GACCTTTGCT TTTCTTCGGA GCTGTTCGGT AACCCATATC TGCATTTTCT TGAGAAAGCT AAGTGTCCTT
GAAATGCAGC TGAGATTGTC CGTCCAGTCC TCTTTGGGAA GTGACAAATC AGAACTGATT CCCAGAGGTC GATCTGATGA
GTGTATGACA AATTATTTTA TTGTATTTTA TTGTATTTTA ATGAGCTTAT AATGTGAAGA AACTGTGGTA CTAAACCAGA
AGCCAATAGG ATTCGATATG TCGTATGGAG TGGATATGTT TTTGTTGGAT GTCATGTTAA GAAGTAAATC GATGGAGGCT
AATTGGTGGT CGATCTGCAG TCTCTTAAGT GCTGCTGCCT CCAAACATTT TTGTTGCTTT TCACCTTTTT TTAAGTCAGT
AGAGTTCCAC TGCTCAAGCC TGGTGTAAGA TGATGCAACA GTCACTGTCA TCGTCATATC ATGCTGTTTC AAAAAGTTAT
TAAATTAACT AATTATAAAA CCTGTTGTTG ACAATGATGG ACATTGATCT GAAAATGTGA TATCGAGCAG AGCTATCATG
AAGGAAT

>Vigan.04G354600.01
ATGGCAGGCA TTCGAATGAT AGATATAGCC GTCAATTTCA CCGATGGCAT GTTCAAGGGA ATCTACCACG GCAAGCAATG
TCACGTCTCC GATATTGCAA CCGTTTTGAA CAGGGCTTGG GCTGCTGGCG TCACCCGAAT TATTGTAACT GGTGGGTCTC
TTGAAGAATC AAGGGAAGCA CTTGCAATTG CAGAAACAGA TGGAAGACTT TTCTGCACCG TTGGTGTGCA TCCAACACGA
TGCAAGGAAT TTGAGGAGAG TGGAGATCCA GAGAAGCATT TTCAAGCTCT TTTGTCCTTG GCTAAAGACG GAATTCAGAA
AGGAAAGGTG GTTGCTATTG GAGAATGTGG ATTGGACTAT GACAGGCTTC ATTTTTGCCC AGCAGAGATT CAAAAGAAGT
ATTTCGAGAA GCAATTTGAA TTAGCACATA CCACAAAACT GCCTATGTTT TTGCACATGC GAGAAGCTGC TGCAGATTTC
TGTGAAATAG TGGAGAAAAA TAAGGACAGG TTCACTGCCG GAGTCACCCA TTCCTTTACT GGTAGTATGG ATGATAGCAT
TAAGCTTCTC TCATTTGATA AAATGTACAT AGGCATAAAT GGGTGCTCTC TGAAGACAAC TGAGAACCTT GATGTTGTTA
AGGGTATACC TATTGAAAGA ATGATGATTG AGACAGACTC ACCATACTGT GAAATCAAGA ATACTCATGC AGGAATTGGT
TTTGTTAAAT CTACATGGCC TTCTAAGAAG AAAGAGAAGT ATGATCAAGA GTGCATTGTT AAAGGCCGAA ATGAACCTTG
TTTAGTTAAG CAAGTTCTTG AAGTTGTTGC TGGCTGTAAA GGCATCACTG ACGTGGCTAA CCTCAGCAGA ACAGTATACC
ATAACACTTG CAGGATTTTT TTCCCTCATG ACTTAGATTC TGCAGCTGAT GCTCTACTAG CTGGCGGTAA TCCTTCTTAA

>Vigan.04G354600.01
MAGIRMIDIA VNFTDGMFKG IYHGKQCHVS DIATVLNRAW AAGVTRIIVT GGSLEESREA LAIAETDGRL FCTVGVHPTR
CKEFEESGDP EKHFQALLSL AKDGIQKGKV VAIGECGLDY DRLHFCPAEI QKKYFEKQFE LAHTTKLPMF LHMREAAADF
CEIVEKNKDR FTAGVTHSFT GSMDDSIKLL SFDKMYIGIN GCSLKTTENL DVVKGIPIER MMIETDSPYC EIKNTHAGIG
FVKSTWPSKK KEKYDQECIV KGRNEPCLVK QVLEVVAGCK GITDVANLSR TVYHNTCRIF FPHDLDSAAD ALLAGGNPS*