GBrowse Details

Vigan.04G307800.01

Basic Information:
Name: Vigan.04G307800.01
Multiple alignment
Variant Information
Position: Chr04:43091391..43094987 (+ strand)
Length: 3597
Functional Information:
Description: Similar to Lesion inducing protein. [U5TZH0, Phaseolus vulgaris]
InterPro: HR-like lesion-inducer (IPR008637)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:33.59,22.72,29.11,6.96,12.92,24.41,34.03,10.10
Automatic updates:
Name: NM_001248526 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500514 (LOC100500514), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:43091391..43091556 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr04:43091557..43091624 (+ strand)
Length: 68
Type: CDS
Position: Chr04:43093171..43093285 (+ strand)
Length: 115
Type: CDS
Position: Chr04:43093905..43093994 (+ strand)
Length: 90
Type: CDS
Position: Chr04:43094081..43094179 (+ strand)
Length: 99
Type: CDS
Position: Chr04:43094288..43094389 (+ strand)
Length: 102
Type: CDS
Position: Chr04:43094390..43094987 (+ strand)
Length: 598
Type: three_prime_UTR

>Vigan.04G307800.01 class=Sequence position=Chr04:43091391..43094987 (+ strand)
TTTTTCCCTA AAAGACTATA TCACCCCTCA TCGACCTTAT TTTCAATTTT CGCTTCGCAC GCTCTTTTCT CTCTCGTTCT
CGCTCTGACC GGGAAAAAGA AAAGAAAGAG CAGTTTTCTT CGCCCACCCT AGATTTTCTC TTTCTCCGTC TCTCTCTAAA
TTCTCAATGG CGTTCTCTTC GTTTCTCGGC AGAGTCCTCT TTGCGTCCGT TTTCATCCTC TCTGCTTACC AAGAGTTAGT
TCATATTCCT CACTCATCTT TTACTCGCAC TTCGAATCAT GCATGTCGGT TAATTTTTGT TGTTGCAGTA ATTTATTGGT
TTAACTTCTT TTTTTCTACT TCTGCTGTGT TGCTTGTTGT GGTAGTTTCT CTGTTTGGAT CCGTTGGGTG CAATTGACTA
GTTAAAACGA TTATGCAGAT CTGTGTTTCA CATAGTTGAA GTGCATAAAA CCAATATTTT TTCGCTTTTA GATTTTTTTG
CTTTTTTTGG ATTTCACTTG TTGGTCGCAG TGATAGATTT CTTATATGCG TTAGTCCATT TTCTTGGTAT GGTAGTTGGA
TCTTCTCGCA TCTATTGCTT TTGTTGATCT GCAATTGCTA CCACTGTAGT GTAGTTGCAA GCTTTGATGA TTGCTGGTGT
GGTTTTGGAA TCGTTTTATT GCATTAGCGG TTTCGGGTTT TGTCAATCTA ACTTTGGTTG GGTAGTTTAC GAATGAGTTT
TGACCGTGTG CTGTTCTTAT CAGCTAGCAA TTAAGAAGTA GTGTGGGCGC AGGGTAATTT TTGCTGGTTA TTAAATAATT
AGTGTGGTTG TTTCACTCTC TCTCTCTCTC TCTCTCTCTC TCTCTTCGTT TGTAATGTGT TATTTTGAAA CTAGGATATT
ATTCCGAAAA AAATGGATAT TCTTACATTA TTAATGTTAT ATGAAGGTTA ATCAATTTTC AGTTTTCGTT CAAGGAACTC
ATCCCTGATT TTTATTAGTG TGTATTTAAA TAAAATTCTC ATTAAGCACT CATAGAAAAT TAATATAAGA TGAAACTTTT
CTCTTAAGTA AAAAATGTTT ATACATAATT TAATTTTTGG TACTCCCTTT TAGCTTCTTC AAAAAGCTAA TTTTAACATT
GCATAAGATT ATTTCAACTG ATGAGATAAA CTTAATTTAT TTCACCATCT TATTATCGAT GCCTTCAATT ATTTGTTAAA
TTTAATCGAA ACATGACCTA AGTCCTTGAG CTAAAAATGA CTATTTGTCG GGGATGGGGG TATATTAAAA ATGGTCGTAT
CCTGTTCCTT GCTTGTTGAG GGCAAGGGCA AGGTGATGAT GACATTTATC TTGTATCAAG TTAGGTTCCA ACAGAGATTT
GCATGTCTTT GTTTTAGGGT TAAGGATTGA GGGAGGGAAA TCTGTAATCT TTATAACACA ATATTACACT AACTGAATTT
CTGGTTGTCG TTGCTAGTGG ACTATTACCT TCTAATTTAA GTGGAATAAT GTGAATTATG TTCCTCTTTT CTTTTCTATA
CTTTCCCATG TTTAATTCTT ATTTAGATTT GATTGTTTGC ATTCATATAA GAATCTGATT TATAGGCTCA TTTGATATAT
TCTTGGGCTA GTTGATAGAG TTTCTTTTTA GTGTTCTGTT TACATTTAAT CAGACATTAG AAACTAATAA ATCTTTTCAT
TTGTCATTTT TTATTCTGGA AGCACATAGC AATCAATCTT TACTTGTTTT TATTTATTTA TTTTGTTTTC TTATTTATCC
TCACTTTCTA TTTTGTACAG ATTTAATGCT TATGGGGTTG ATGGCGGACC CGCAGCAAAA GCACTGAGAC CGAAGTTTGA
TGCATTTGCC CAACAAGTAC ATTCTAGAGT TGGATTTCAA CTTCCGGATA TCGATGTTAG TTTCTTTCTC TTTTATTCTA
TATCATTTAA GGAAAGCATT AAAATACAAC TAAACAGATG AACAAGTTAT TGGGTAGGAA CACAAAAAGG ACAAGGTGAT
TAAATTTCAA GTGTGACATG GAGTTGAACG CTGCTTGTGT TTGCGTTCAT TTATCTATTA TTAATTACAG GTTTAATGTC
TATTTAGTGG TTGATGAAAC ATATACATTG GTATTTAATA GTGTTGATTT TGTAAATGCA TGTGTTTAAA TAAAACCACC
ATTTATAGTG AACAAAGAAT TAACATGTCT TGGGCTTCTC CCTCTGGCTT TGCACATACT GTTACTGCTT ATAGAACATA
TCCAAAATTG GGTTCTCAGC AGGCAGCAGG ATGAAAGAGA AAAATAGTTT GAAAACTTGG ATAAATGTTC TAAAAAAATG
GTAGGCACGG GGAAGTCATG AAACATTGTA GTGGAAAATA ATTGAACTTT CTTACATTGT TATGACTGTC ATGCATCTAG
TGCATCCTTG TATGAACATG TTCCTACTTC ATCCAATCAA GTGCTCATTT TAGCATACAT ATAATGTTAT TTTGTATGTA
GCAGATGTAT TTATATGATT GGTGTCATTA ACAGATGAAG TTTTTAGTTG CTGGGGCTAT TGCTCTCAAG GGCATTGGAG
GGATTATTTT CATACTTGGC AGCTCTTTTG GAGCTCTCCT TTTGGTTTGT AGCTTGACTT TAACCCATGA CATTGAAGTT
GCCTTTTCAA GTGCTCAATT TTTGAAGCCT TGGTTATTTT CTCCTTGTAG CTTTTGCACC AATTGATTAC TACTCCTATA
CTGTATGATT TCTACAATTA TGACAGCGAG GACAAAGAAT TTATTCAACT TTTCATCAAA TTTACTCAGG TAAGAGCGTG
TTCCTTCTTT TAAAAAGAAA TTCATACGGA ATGCTCAAAC TAGAGATGTA ATGTTTCATG TATTGTTACA ATTTATCAAA
TATTGTACTC CTTGCAGAAT ATGGCCCTCT TCGGGGCTTT GTTGTTTTTC GTTGGGATGA AAAACACCAT TCCTAGAAGG
CAACCCAAGA AGAAGGCTCC CAAAACAAAA ACTTATTAGT TGCAATGAGT TCTTGGATTG TTCCTGGTTG CTCGTTACAC
CCCTTTTCCA ATTCTCCAGG ATTTAATTTA GGTCTGTTTC AGAACAAATG CCCCCTAATG AGTATTCAAT GTACCACCCA
TGACGGATTA TATATTTAAT TTATAATTAT TTATATATGT ATGTTATTTT TTGGTTTGCT TGACATTAGG AACTATCTTT
CGATAACTTG TATACGAAGA GGGAAAAAAT TACCAGAGCC TGTTCATTCA GACTTTGAGT GCCAATTTCG TTATCTAGCG
GATTTGATGG AAGGTAAAGT CTGACGGTTT CTATTTTAAA TTAAGCTTGA TTTCTTCACC TTGGCCCGTG GATTTGTGTT
TCTTGTTTTT TATTTTTTGG TTCTCTTTTG GCATAGGAAA TGAATGCTCA TTTGAATTTT TCACCCTATG TGGTTAAACA
TACAGTAGAT TGTTAGCAAA TCAAGCTTTT GTGAAAAAAA CTTATTCACT TAACTTCCTG GGTTGATGTT GTATTCAAAA
TAGACAAAAA CGTTTATAAA CGGTTAATGC ATAAACTACC TGTAAGACTC TAATGGCTAA TAAAACTCCA ATGGCTA

>Vigan.04G307800.01
TTTTTCCCTA AAAGACTATA TCACCCCTCA TCGACCTTAT TTTCAATTTT CGCTTCGCAC GCTCTTTTCT CTCTCGTTCT
CGCTCTGACC GGGAAAAAGA AAAGAAAGAG CAGTTTTCTT CGCCCACCCT AGATTTTCTC TTTCTCCGTC TCTCTCTAAA
TTCTCAATGG CGTTCTCTTC GTTTCTCGGC AGAGTCCTCT TTGCGTCCGT TTTCATCCTC TCTGCTTACC AAGAATTTAA
TGCTTATGGG GTTGATGGCG GACCCGCAGC AAAAGCACTG AGACCGAAGT TTGATGCATT TGCCCAACAA GTACATTCTA
GAGTTGGATT TCAACTTCCG GATATCGATA TGAAGTTTTT AGTTGCTGGG GCTATTGCTC TCAAGGGCAT TGGAGGGATT
ATTTTCATAC TTGGCAGCTC TTTTGGAGCT CTCCTTTTGC TTTTGCACCA ATTGATTACT ACTCCTATAC TGTATGATTT
CTACAATTAT GACAGCGAGG ACAAAGAATT TATTCAACTT TTCATCAAAT TTACTCAGAA TATGGCCCTC TTCGGGGCTT
TGTTGTTTTT CGTTGGGATG AAAAACACCA TTCCTAGAAG GCAACCCAAG AAGAAGGCTC CCAAAACAAA AACTTATTAG
TTGCAATGAG TTCTTGGATT GTTCCTGGTT GCTCGTTACA CCCCTTTTCC AATTCTCCAG GATTTAATTT AGGTCTGTTT
CAGAACAAAT GCCCCCTAAT GAGTATTCAA TGTACCACCC ATGACGGATT ATATATTTAA TTTATAATTA TTTATATATG
TATGTTATTT TTTGGTTTGC TTGACATTAG GAACTATCTT TCGATAACTT GTATACGAAG AGGGAAAAAA TTACCAGAGC
CTGTTCATTC AGACTTTGAG TGCCAATTTC GTTATCTAGC GGATTTGATG GAAGGTAAAG TCTGACGGTT TCTATTTTAA
ATTAAGCTTG ATTTCTTCAC CTTGGCCCGT GGATTTGTGT TTCTTGTTTT TTATTTTTTG GTTCTCTTTT GGCATAGGAA
ATGAATGCTC ATTTGAATTT TTCACCCTAT GTGGTTAAAC ATACAGTAGA TTGTTAGCAA ATCAAGCTTT TGTGAAAAAA
ACTTATTCAC TTAACTTCCT GGGTTGATGT TGTATTCAAA ATAGACAAAA ACGTTTATAA ACGGTTAATG CATAAACTAC
CTGTAAGACT CTAATGGCTA ATAAAACTCC AATGGCTA

>Vigan.04G307800.01
ATGGCGTTCT CTTCGTTTCT CGGCAGAGTC CTCTTTGCGT CCGTTTTCAT CCTCTCTGCT TACCAAGAAT TTAATGCTTA
TGGGGTTGAT GGCGGACCCG CAGCAAAAGC ACTGAGACCG AAGTTTGATG CATTTGCCCA ACAAGTACAT TCTAGAGTTG
GATTTCAACT TCCGGATATC GATATGAAGT TTTTAGTTGC TGGGGCTATT GCTCTCAAGG GCATTGGAGG GATTATTTTC
ATACTTGGCA GCTCTTTTGG AGCTCTCCTT TTGCTTTTGC ACCAATTGAT TACTACTCCT ATACTGTATG ATTTCTACAA
TTATGACAGC GAGGACAAAG AATTTATTCA ACTTTTCATC AAATTTACTC AGAATATGGC CCTCTTCGGG GCTTTGTTGT
TTTTCGTTGG GATGAAAAAC ACCATTCCTA GAAGGCAACC CAAGAAGAAG GCTCCCAAAA CAAAAACTTA TTAG

>Vigan.04G307800.01
MAFSSFLGRV LFASVFILSA YQEFNAYGVD GGPAAKALRP KFDAFAQQVH SRVGFQLPDI DMKFLVAGAI ALKGIGGIIF
ILGSSFGALL LLLHQLITTP ILYDFYNYDS EDKEFIQLFI KFTQNMALFG ALLFFVGMKN TIPRRQPKKK APKTKTY*