GBrowse Details

Vigan.04G288300.01

Basic Information:
Name: Vigan.04G288300.01
Multiple alignment
Variant Information
Position: Chr04:41040562..41045116 (+ strand)
Length: 4555
Functional Information:
Description: Similar to Heat shock protein binding protein, putative. [B9SXJ3, Ricinus communis]
InterPro: DnaJ domain (IPR001623)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.12,7.78,5.92,6.65,8.01,4.30,6.91,5.59
Arabidopsis thaliana homolog: AT2G42080.1
Automatic updates:
Name: NM_001254407 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100807880 (LOC100807880), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:41040562..41040731 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr04:41040732..41040845 (+ strand)
Length: 114
Type: CDS
Position: Chr04:41041118..41041213 (+ strand)
Length: 96
Type: CDS
Position: Chr04:41043723..41043858 (+ strand)
Length: 136
Type: CDS
Position: Chr04:41044197..41044485 (+ strand)
Length: 289
Type: CDS
Position: Chr04:41044581..41044635 (+ strand)
Length: 55
Type: CDS
Position: Chr04:41044770..41044844 (+ strand)
Length: 75
Type: CDS
Position: Chr04:41044845..41045116 (+ strand)
Length: 272
Type: three_prime_UTR

>Vigan.04G288300.01 class=Sequence position=Chr04:41040562..41045116 (+ strand)
CTCAAATGTT TTGCCTAATG AATAAACCAC CATTTCAGAT AGTTTGTGGT CTTTGATGAC CATTCTGATT CTGGTTAGGT
CTAATTTAGG ATTATTCCAA TTTTCGTCTT AAACAAGTTC CATCGATAGC CCGAGGTGGG GCAAAACAAA GGACTCGAAT
TGCAGAGAAA ATGAGCAGCG CCATCTTCAA AGCTTCAACC AGCAATAATC TTCATTCCTC TCTCAGGGCA CTCTTCCATT
CAACCCCTCC CCTGCAACGT AAACGGCGCA ATTTTTGGGA CACCGTTAGT TTCTCTCAAT TCCCTATGCT TTATGTTGTC
ATTTCACTAC TTTTCCTTTC ATTCAACAAT TATTGCATTG GAAACCATTG TGTCTTTTGA TAGTGGGCCT CACCGCGTCA
ATTTTTCATT TTTCTTTCTG ATTTTGTATG TTCGGAACTG TTTGTGACCC AACAATGTTA TTTTTATTGA ACTAATTAAT
GAGAGTTCAA TGTCTTTTGG TTGTGTAGAA AGTGTTGTTT ATATGTTTTG TTGGGCTGAG AACAGTTTAA TTGCAGAGAG
GCAACAATCA TAACTCCAGA AGGTTTAGAC GGATGCAAGC AAAACATAGA GTAATGAACA GTATCAATGA TTATGCAGAA
ACCCTGTTTC AGGTTCACCA TGCTTCTTCT CCTTTTCATG TTTTTGTATG TGTGGGCATC CGCAGTTTCT TGTAATTTTA
GCATTCATTT ATAGACTAAT ATATTATATA GTGTTGCTTG AATTAGGTAA TTCTGTGGTT TCTTGGCTTG GTTTCTTTCC
GATTGTTACA ATATATATAT ATATATATTT CTCCTTAATG TCTTTTCCAT GCTTCACTTG TTTATTAAGA AGTAGGGTCA
GTGATGAACA GCCTCGTATT TAGCATTTAG GAACTGCTAC AATCTGTTTG GATAGGTTAA ATCTTTGTGT TCTGTTTAAG
CAAGATGGTT CTTGACAAAC TATATTGTGA ATTGGTAGGA TGGATTTCTA TGTCTAATCT AGTGACACAT GTTAAATAAG
AGTGTACAAT GACGATACGT ATGGGCTCGC ATTGACTATT TGGGTTCATA AATATACTGT GAGCTTGTGA TCTCCTATAC
CAAGTTAGGA ACAAGATATT GCAACTTCAA AATATGCTGT GAGCTTGTGA CCTGCAATTT AAGGATAACA TATCGAAGGT
TAACATCATC AATGGCCTCT TGCCAATACA TCCAGCCGGT AGGAAAGCGC TGGTCATTCT TTCTTGATGA CCACTATCAG
AGTAAGAACT GAGGCATCAG ACCTGATGGA AGGTGATCTT CAATGTAAAG GAGAAATAAA TTGTATAGAG AAATAAAACA
TAGAATTGAA GAGGTCAAAA ATATTCTTCT CTTATTATGA CATAGTCAAG AGCATCCATT ATATATACAA TGAAAGAAGA
GAGAGAATAA GTATAACAGA AAGAGCAGAG CCTGTGCAAC AAACTAACAA AATGCAAAAC AGATGTAAAA TCAAAACAGA
AAGATATTTG CACTATATAC ACTAACAATC CCCCTCAAAC TCAAGGTTCA TGAAAATAAT CAAGAGCATT GAGTTTGTTA
TGTAAGTGAT AAAACTGGAC TTGAGAGACA GGTTTAGTGA GTATGTGAGT GATTATTAAT GAACGACCCA GGACTTTTTC
CCGCACAAAA AGGATGTCTA GCTCCATGTG TTTGGTCGGA AAGTGTGAAA CAGGGTTGTG ACTTAAAACA ACAGTGCTTT
GATTATCACA ATAGATGATA GGTGTTGCAC AATTAGTGTT TAGCTCTTTA AGAAGAGACT CCAGCCATAA GATCTAAGAC
TATGGTATTC TGCCTCTGCA CTTGACCGAG CAACCAAAGT TTGCTCTTTA GGCCACCAAG AAACCAAATT ACTTCCAAAG
AATATACAAG CACCAAAAGT GGATCTTCTG TCATCAATAT CAGATGCCCA ATCTGCATCA CAATAAGCAA TGAGACTGTA
CTTTTCAGAA GAAGGTGCAG GCTGAAGATG CAAGCCATAA GAGATAGTAC CCTTGCGATA ACACAATATT CTTTTGACTG
CTTTCCAGTG TTCAAGCAGT GGCTGTGACA TAAATTGACA AACTTTATTC ACACTATAAC CAATCTCAGG TCTGGTTATA
GTTACATATT GCAATGCACC GACAATGGAT CTATAGAGAG CAGGGTCATC CATATAATCA GAACCATATT TGGAAAGTTT
TAGACCTCTT TGAACAGGAG TGGAGATGCC TTTTGCTGCT GACATTCCAG CTTTGTAAAG CAAAATACGA ATGTATTTGG
ATTGAGAAAG AAGAGATCCA TCATTGAGAT GTTTGACCTC AATTCCCAAA AAATAGTCTA GAGCACCGAA CTGTTTGAGA
TTAAAGGCAG AGTGCAAATT AAATACGACA GAGAGAGAAT AGGTATAATA GAAAGAGCTG AGCCTATGCA ACAAACTAAC
AAAATGCAAA ACAGAATGTA AAATCAAAAC AGAAAGATAT TTGCACTATA TACACTAACA AGACCCATCT ATTAGACTTA
TCCCACTCTC CCTCAATAAA CTTATTGTAA AATGCATCAA TGTCACTGCC AACGATTGAC ATTAGACCCA TTCATGTTAT
TACATGTTTT TTGGGATCAC GTGACTTGGG AGGTGCGACA TTTGGAGAAG CCATGACATT ATTTTATTGC TGATATTCAA
GTGGGAAGCT TTCATACATA TAGCACGTAC GCAAACACAC ATATAAAGTT AGAAGGCCTT TTTATGTGAG AGTGACAGGA
ACAAATACTG TCCATTAGAT TTTTTCATGA ATATTGAAGA TTAGAACATA GAAGTGATGT TTTTATGTGG CCATGCACCT
TTGAATTGCC TTTAATCTTG ACTGTTCATG TACAATTGTA TGATCTATAT TTCTTCCCCT TTCACTGATG CTAAAATGAT
CCTCACAATA TATACTGCAA GGTATATGGT GTTTTTGAGA TTGGTAGGGA TGGGTTCAGT TTTAATGTAA TAAAATAAAT
AAAATAAAAT TATTTGTTAA CCACTTAATG AAGAAGTAAA CTCAACCCCT TCTCTTCCGT GATTTTGTTT GTGCTAAGAT
GTTTTGATGC TTATGGTTGC ACTTTTTTGT GCGTCGTTTA GAGCTGGAAG CAAGGTATTG ATCGGGACGA GCTGCCATCA
AGCCAGGACC CCTCATGGTT TCGTAAAAAG CAATATTTTG ATGGGGGCTC TGGAAGGTAC AGGAATGGCA AACAAGGATC
AAATCATCGG TACAGAAGTA AGGATGCTTG AAATACTTGT GCTGTAACAG AATATATTAC ATGTATCTTG TAGTACTACC
TCTCTTTACA GGTGGTTGTA TCTCTAGGAG ATCATCCTAC ATAATATTGC TGGAAACTTC TTGTTTACTC ATTTAGGATT
GAGAGATTTA AACTTGTGGA TATCATGAAT AGGATTTGAT TTCAAGTTGC ATCATAATCT TTATGAAATC AGTGTAATTT
TTTACGGTGT TTTTATTATT TTCAACAAAA CATAGAAGCT GCTAGATACT TATGACGTCT ACTCTGGAGT CGAATGTATT
AATGGTAAGT TGGTAACAAA CCTTATTTCT TTCAGGAGAT CCTTTGTTTT GTGAAGATGA TTTTGATGTG GAAACCATTT
TCCGTTCTGC CTTTGGTGGG AATAGATTCT TCTATTGGTC CTTCATCAAT GAGGAAAATC CTCAGTGGAG GAGGGCTGAA
CGCTTCTCTA ATTTTGGGAG ATCATGGAAT TGGAGGCATG AAAGCGAAAA TGATTATGAA TCTTCATCTG AGTCTGATAG
TTCTGGTTTA GATTTAACTC CGGATAGATT AGCCCTTGGA TTGAGTGCTT CTGGTCCTCT GAAACTTGAG GATGTAAAAA
ATGCGTGAGT TTTTGCTTCT TCTGTAATTT CGTCTTCATT AAAATGTTAG GAAGCCATAG TTCTTTACTA CGATATTCTT
AACATTTTTA TATCATCAGG TACCGGGCCT GTGCTCTAAA ATGGCATCCA GATCGTCATC AAGGCTCTTG CAAGGTGCTG
CGATGCTCTA ACCACCGATT ATATTCCTCC TCCTTTTTGT TCTATTCGAT GTTCTGGAGT CTCTATTATT AGTTTGCATA
ACTTCCTAAT TCTTTTAATT TTTTTTTCTG TACATTGATA CTTGATAGGC TATAGCAGAA GAGAAGTTCA AGCTTTGCAG
TGCAGCTTAT CAATCTTTAT GTGATAAGCT GGCCTTGGAT TGAGGATCCT TCAGGCCTAT GCTAATCCTT TTCTGGAATT
CTCGAGCCAG ATCAAACCAG ATCGTTGACC GTGCTATATT ATTTAACACA GCAATCCTGC TTTCACTGTA TTTTGTAGTT
TTAAATAATT TTATTAGATG ATCATGCAAA TAACATGTAT ACTATTTTAC GATTACAAAT GTACCATTTT TTTGATAGGT
CAAATGTACC ATTTTTTACC ATTTATTGTC TCAGCTAATT ATGTTAAGAA TCTCTATTGT TCAAAGTTAC TATTT

>Vigan.04G288300.01
CTCAAATGTT TTGCCTAATG AATAAACCAC CATTTCAGAT AGTTTGTGGT CTTTGATGAC CATTCTGATT CTGGTTAGGT
CTAATTTAGG ATTATTCCAA TTTTCGTCTT AAACAAGTTC CATCGATAGC CCGAGGTGGG GCAAAACAAA GGACTCGAAT
TGCAGAGAAA ATGAGCAGCG CCATCTTCAA AGCTTCAACC AGCAATAATC TTCATTCCTC TCTCAGGGCA CTCTTCCATT
CAACCCCTCC CCTGCAACGT AAACGGCGCA ATTTTTGGGA CACCAGAGGC AACAATCATA ACTCCAGAAG GTTTAGACGG
ATGCAAGCAA AACATAGAGT AATGAACAGT ATCAATGATT ATGCAGAAAC CCTGTTTCAG AGCTGGAAGC AAGGTATTGA
TCGGGACGAG CTGCCATCAA GCCAGGACCC CTCATGGTTT CGTAAAAAGC AATATTTTGA TGGGGGCTCT GGAAGGTACA
GGAATGGCAA ACAAGGATCA AATCATCGGT ACAGAAGAGA TCCTTTGTTT TGTGAAGATG ATTTTGATGT GGAAACCATT
TTCCGTTCTG CCTTTGGTGG GAATAGATTC TTCTATTGGT CCTTCATCAA TGAGGAAAAT CCTCAGTGGA GGAGGGCTGA
ACGCTTCTCT AATTTTGGGA GATCATGGAA TTGGAGGCAT GAAAGCGAAA ATGATTATGA ATCTTCATCT GAGTCTGATA
GTTCTGGTTT AGATTTAACT CCGGATAGAT TAGCCCTTGG ATTGAGTGCT TCTGGTCCTC TGAAACTTGA GGATGTAAAA
AATGCGTACC GGGCCTGTGC TCTAAAATGG CATCCAGATC GTCATCAAGG CTCTTGCAAG GCTATAGCAG AAGAGAAGTT
CAAGCTTTGC AGTGCAGCTT ATCAATCTTT ATGTGATAAG CTGGCCTTGG ATTGAGGATC CTTCAGGCCT ATGCTAATCC
TTTTCTGGAA TTCTCGAGCC AGATCAAACC AGATCGTTGA CCGTGCTATA TTATTTAACA CAGCAATCCT GCTTTCACTG
TATTTTGTAG TTTTAAATAA TTTTATTAGA TGATCATGCA AATAACATGT ATACTATTTT ACGATTACAA ATGTACCATT
TTTTTGATAG GTCAAATGTA CCATTTTTTA CCATTTATTG TCTCAGCTAA TTATGTTAAG AATCTCTATT GTTCAAAGTT
ACTATTT

>Vigan.04G288300.01
ATGAGCAGCG CCATCTTCAA AGCTTCAACC AGCAATAATC TTCATTCCTC TCTCAGGGCA CTCTTCCATT CAACCCCTCC
CCTGCAACGT AAACGGCGCA ATTTTTGGGA CACCAGAGGC AACAATCATA ACTCCAGAAG GTTTAGACGG ATGCAAGCAA
AACATAGAGT AATGAACAGT ATCAATGATT ATGCAGAAAC CCTGTTTCAG AGCTGGAAGC AAGGTATTGA TCGGGACGAG
CTGCCATCAA GCCAGGACCC CTCATGGTTT CGTAAAAAGC AATATTTTGA TGGGGGCTCT GGAAGGTACA GGAATGGCAA
ACAAGGATCA AATCATCGGT ACAGAAGAGA TCCTTTGTTT TGTGAAGATG ATTTTGATGT GGAAACCATT TTCCGTTCTG
CCTTTGGTGG GAATAGATTC TTCTATTGGT CCTTCATCAA TGAGGAAAAT CCTCAGTGGA GGAGGGCTGA ACGCTTCTCT
AATTTTGGGA GATCATGGAA TTGGAGGCAT GAAAGCGAAA ATGATTATGA ATCTTCATCT GAGTCTGATA GTTCTGGTTT
AGATTTAACT CCGGATAGAT TAGCCCTTGG ATTGAGTGCT TCTGGTCCTC TGAAACTTGA GGATGTAAAA AATGCGTACC
GGGCCTGTGC TCTAAAATGG CATCCAGATC GTCATCAAGG CTCTTGCAAG GCTATAGCAG AAGAGAAGTT CAAGCTTTGC
AGTGCAGCTT ATCAATCTTT ATGTGATAAG CTGGCCTTGG ATTGA

>Vigan.04G288300.01
MSSAIFKAST SNNLHSSLRA LFHSTPPLQR KRRNFWDTRG NNHNSRRFRR MQAKHRVMNS INDYAETLFQ SWKQGIDRDE
LPSSQDPSWF RKKQYFDGGS GRYRNGKQGS NHRYRRDPLF CEDDFDVETI FRSAFGGNRF FYWSFINEEN PQWRRAERFS
NFGRSWNWRH ESENDYESSS ESDSSGLDLT PDRLALGLSA SGPLKLEDVK NAYRACALKW HPDRHQGSCK AIAEEKFKLC
SAAYQSLCDK LALD*