GBrowse Details

Vigan.04G277300.01

Basic Information:
Name: Vigan.04G277300.01
Multiple alignment
Variant Information
Position: Chr04:39799334..39801904 (+ strand)
Length: 2571
Functional Information:
Description: Similar to Uncharacterized protein. [I1N8Z6, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Biological Process: response to heat (GO:0009408)
Cellular Component: nucleus (GO:0005634)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Heat shock factor (HSF)-type, DNA-binding (IPR000232)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Heat shock transcription factor, plant (IPR027709)
Heat shock transcription factor family (IPR027725)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.62,0.09,3.14,0.34,5.39,0.48,16.86,0.47
Arabidopsis thaliana homolog: AT2G41690.1
Automatic updates:
Name: BT098791 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16B16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001353424 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat stress transcription factor Hsf-06 (GMHSF-06), mRNA.
PubMed ID: 25416131 NCBI(pubmed)
Status: Known Variant
Name: NM_001353469 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat stress transcription factor 36 (HSF-36), transcript variant 2, mRNA.
PubMed ID: 25416131 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:39799334..39799707 (+ strand)
Length: 374
Type: five_prime_UTR
Position: Chr04:39799708..39799947 (+ strand)
Length: 240
Type: CDS
Position: Chr04:39801185..39801643 (+ strand)
Length: 459
Type: CDS
Position: Chr04:39801644..39801904 (+ strand)
Length: 261
Type: three_prime_UTR

>Vigan.04G277300.01 class=Sequence position=Chr04:39799334..39801904 (+ strand)
AGTTGCTTTA TCACATTTAA TAAAACATAT GTATTTATAT TATTGGGTGT GCATTATTTT TAACTTTAGG GTAAAAGAAT
GTGCATGCCA TGTATAATAT ATATATGTAT AAATAAATAG GGTAGGCTTA GTTCTTACGT TTCAACTATT TATTCATTGT
GAGAGAGGTT GCTATAGCTA AGGAGAGAAA CAAGGAAAAT CAATTAAGGT CTTGCAATTC TCATGAACTG TGGAGTCGTG
TTGGGCTTCT ATTGTTGGGG TTGGGAGTTC TTAACTGCCC TTCTTCTCTT CTCTTCTTAT CATCCTTATT GATCTTTTCC
TTCTCTTCAA AACCAAAAAC TTACCATTCT TTCTTTTTAG ATAGAACCAC CAAAATGAAA ATAACAAATA ATAAAGGGTT
GTTGTTGGAA GGAGGAAGAA AGTCTACTCC ACCGCCGTTT TTGCTCAAGA CCTACATGCT TGTCGAGGAT CCGGCTACCG
ACAACGTTGT CTCGTGGAAT GTCGACGGGA CGGCGTTCGT GGTGTGGCAG CCGGCGGAGT TTGCTCGTGA TCTCCTCCCA
ACATTCTTCA AGCACAGCAA CTTCTCCAGC TTTGTGCGCC AACTAAATAC TTATGTACGT AACACCATGA ATTAACTCAC
TCTATATCTA GCATATAATT CTAGTAGTTA CATGATTTGT GTTTTTTGTT TGTTTGATGT CATATTGTAA GTTTTGATGG
TTTGAGAAGA TTTTGCAAAA CCAGAAAAAT TTACGACACA ATTTACTTGG TGGTTTAGTT TTACTATTTT GACAGCTTGA
CTTTAGTTAA GTTACGTATA ATGTCTTAAA TATATATATT ATAGACTCCA TTTTCAAATT GGACATGAAG GGGTGAACGG
AAATTTCCAG TGAGAAAGAA AAATAGTTAG CTTTATAATA AAAAGTGTTA AATATCTTCC CCTTTATATG AAGCAAGAGT
GAAGTGAGGA CACGAACATT TATATTTATG AAAATTTTAT AGGTTAATTT TATGGTAAAT ATAGCTCAAT TTTCTCACTT
TTAAACATGT CTATGTTGTT GCTTTAAATG GATTGAATCC TCAATTAAAA TTTCGTCAAT AACAAGGAAA TAAAAGGAAA
TTTTTTGGAT ATTAAGTTTT ATTAGAAAGG AAAAGAAAAA GTTTTCTTGC ATTGATGGAA CTGGTTACCG ATATTTGTTT
GACCTGGCTT AGACTTTAAT TCGTTTATAC TATTCTTCAT TTATTAGGAA GGAAGATATT TTATCTTTGT CCTTTCATAG
TGGAAAATTT TTGTATTCCA TTCTTCAACT TTTGTGCCAA AAAAAACAAA ATCATTGAAT GAACACGAAC ACGAACATTA
AACAGTACAA TAATACTGAT ATGAATGTGA TGACTTTGAT CATACTACTA TGTTTGTTTG TTTTGAATTC TTACCCTATT
TACGCTATAC ATATATATTG ATTTGATGTG TCTGGTCAGA GCTCATCATA CCTACTTATC AAACTTTGAA GACAAGCACT
AACAAAATTC AATTTTAGTG GGCGTGAAGC CGTGCATGAC TTAGTAACAT TTTTTCTATG CCTTAAAATA ACAAAAACAA
TAGAAATATG ATAAAGTATT TTAAAAAAAA TAAATATTCG TAACTTCATT TCTTAATTTT TTACCAAAAG ATGAGTTGGC
AAGTTATAAG GTTTACCTAA AGAATGATGA AATTCAATGT ATGTGTTGTT GGTGCATAAA TTATTATAGC TTGTTCTGTA
CATGTCTGAT TTGGATTTTG GTTCATGTTA ATTGCATATT TTGCTATCAA AAGTTGGCAG CAGAACTAAA AAAGCATTTG
ATGATGTTTA GGGTTTTCGT AAAGTTGCAA CAAGTAGATG GGAGTTTTTC AATGAGAGGT TCAAGAAAGG TGAAAGAGAA
CAGCTAAATG AGATTCAGAG AAGAAAAGCT TGGAGTAACA AGCAACAAGG AAATGGAGCA AACCAAGTGA CAGCTCATGA
TTCTGATGAA GATCAAAGGT CATCATCAAC TTCATCTTCT TGTGGGTACA GCACTCTGGT GGATGAAAAC AAGAGGCTTA
AGAAAGAGAA TGGAGTGTTG AACTATGAGC TAACGAGCAT GAAAAGAAAG TGCAAGGAGC TGGTTGATTT GGTGGCCAAA
TATTCATCAC ATGCACAAGA GAAGGAAGAA GATGAAAGGC CAATGCTGTT TGGAGTGAGG TTAGAGGTTG AAGGAGGGAG
GGAGATTAAG AGGAATAGAG CTGAGATGAG TGAAAGCGCA AGCATTATGC TGTCTCAGTC ATGCAAATAG ATCTGCTATA
TATATATATA CATACGCACA TATATATGTA GAAGCTTAAA AGTGTTTCAG AATAGATGAT ATACTGAAAG GAATAATCAT
AAATTTGATT AGTTAGCTAG GATTCTTGGA AAGAGTGTTT GAGAATACAA ACGAAGACAC CCTCGAGCAT ATGCTGTAAT
TATGTAATGT GAATTAGGAA GATGACAACT ATAAAATAGG CTCAGGAGGC CATTAATTAG AGAATAAACA AAAAAAAAGT
GCATTGGATA G

>Vigan.04G277300.01
AGTTGCTTTA TCACATTTAA TAAAACATAT GTATTTATAT TATTGGGTGT GCATTATTTT TAACTTTAGG GTAAAAGAAT
GTGCATGCCA TGTATAATAT ATATATGTAT AAATAAATAG GGTAGGCTTA GTTCTTACGT TTCAACTATT TATTCATTGT
GAGAGAGGTT GCTATAGCTA AGGAGAGAAA CAAGGAAAAT CAATTAAGGT CTTGCAATTC TCATGAACTG TGGAGTCGTG
TTGGGCTTCT ATTGTTGGGG TTGGGAGTTC TTAACTGCCC TTCTTCTCTT CTCTTCTTAT CATCCTTATT GATCTTTTCC
TTCTCTTCAA AACCAAAAAC TTACCATTCT TTCTTTTTAG ATAGAACCAC CAAAATGAAA ATAACAAATA ATAAAGGGTT
GTTGTTGGAA GGAGGAAGAA AGTCTACTCC ACCGCCGTTT TTGCTCAAGA CCTACATGCT TGTCGAGGAT CCGGCTACCG
ACAACGTTGT CTCGTGGAAT GTCGACGGGA CGGCGTTCGT GGTGTGGCAG CCGGCGGAGT TTGCTCGTGA TCTCCTCCCA
ACATTCTTCA AGCACAGCAA CTTCTCCAGC TTTGTGCGCC AACTAAATAC TTATGGTTTT CGTAAAGTTG CAACAAGTAG
ATGGGAGTTT TTCAATGAGA GGTTCAAGAA AGGTGAAAGA GAACAGCTAA ATGAGATTCA GAGAAGAAAA GCTTGGAGTA
ACAAGCAACA AGGAAATGGA GCAAACCAAG TGACAGCTCA TGATTCTGAT GAAGATCAAA GGTCATCATC AACTTCATCT
TCTTGTGGGT ACAGCACTCT GGTGGATGAA AACAAGAGGC TTAAGAAAGA GAATGGAGTG TTGAACTATG AGCTAACGAG
CATGAAAAGA AAGTGCAAGG AGCTGGTTGA TTTGGTGGCC AAATATTCAT CACATGCACA AGAGAAGGAA GAAGATGAAA
GGCCAATGCT GTTTGGAGTG AGGTTAGAGG TTGAAGGAGG GAGGGAGATT AAGAGGAATA GAGCTGAGAT GAGTGAAAGC
GCAAGCATTA TGCTGTCTCA GTCATGCAAA TAGATCTGCT ATATATATAT ATACATACGC ACATATATAT GTAGAAGCTT
AAAAGTGTTT CAGAATAGAT GATATACTGA AAGGAATAAT CATAAATTTG ATTAGTTAGC TAGGATTCTT GGAAAGAGTG
TTTGAGAATA CAAACGAAGA CACCCTCGAG CATATGCTGT AATTATGTAA TGTGAATTAG GAAGATGACA ACTATAAAAT
AGGCTCAGGA GGCCATTAAT TAGAGAATAA ACAAAAAAAA AGTGCATTGG ATAG

>Vigan.04G277300.01
ATGAAAATAA CAAATAATAA AGGGTTGTTG TTGGAAGGAG GAAGAAAGTC TACTCCACCG CCGTTTTTGC TCAAGACCTA
CATGCTTGTC GAGGATCCGG CTACCGACAA CGTTGTCTCG TGGAATGTCG ACGGGACGGC GTTCGTGGTG TGGCAGCCGG
CGGAGTTTGC TCGTGATCTC CTCCCAACAT TCTTCAAGCA CAGCAACTTC TCCAGCTTTG TGCGCCAACT AAATACTTAT
GGTTTTCGTA AAGTTGCAAC AAGTAGATGG GAGTTTTTCA ATGAGAGGTT CAAGAAAGGT GAAAGAGAAC AGCTAAATGA
GATTCAGAGA AGAAAAGCTT GGAGTAACAA GCAACAAGGA AATGGAGCAA ACCAAGTGAC AGCTCATGAT TCTGATGAAG
ATCAAAGGTC ATCATCAACT TCATCTTCTT GTGGGTACAG CACTCTGGTG GATGAAAACA AGAGGCTTAA GAAAGAGAAT
GGAGTGTTGA ACTATGAGCT AACGAGCATG AAAAGAAAGT GCAAGGAGCT GGTTGATTTG GTGGCCAAAT ATTCATCACA
TGCACAAGAG AAGGAAGAAG ATGAAAGGCC AATGCTGTTT GGAGTGAGGT TAGAGGTTGA AGGAGGGAGG GAGATTAAGA
GGAATAGAGC TGAGATGAGT GAAAGCGCAA GCATTATGCT GTCTCAGTCA TGCAAATAG

>Vigan.04G277300.01
MKITNNKGLL LEGGRKSTPP PFLLKTYMLV EDPATDNVVS WNVDGTAFVV WQPAEFARDL LPTFFKHSNF SSFVRQLNTY
GFRKVATSRW EFFNERFKKG EREQLNEIQR RKAWSNKQQG NGANQVTAHD SDEDQRSSST SSSCGYSTLV DENKRLKKEN
GVLNYELTSM KRKCKELVDL VAKYSSHAQE KEEDERPMLF GVRLEVEGGR EIKRNRAEMS ESASIMLSQS CK*