GBrowse Details

Vigan.04G210100.01

Basic Information:
Name: Vigan.04G210100.01
Multiple alignment
Variant Information
Position: Chr04:30485601..30489251 (+ strand)
Length: 3651
Functional Information:
Description: Similar to quinone oxidoreductase-like protein At1g23740, chloroplastic-like. [XP_004515401.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups (GO:0016747)
InterPro: Alcohol dehydrogenase superfamily, zinc-type (IPR002085)
Quinone oxidoreductase/zeta-crystallin, conserved site (IPR002364)
GroES (chaperonin 10)-like (IPR011032)
Alcohol dehydrogenase GroES-like (IPR013154)
NAD(P)-binding domain (IPR016040)
Polyketide synthase, enoylreductase (IPR020843)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,1.56,95.02,92.50,105.34,225.97,109.11,157.00
Automatic updates:
Name: NM_001255054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max quinone oxidoreductase-like protein At1g23740, chloroplastic-like (LOC100817947), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:30485601..30485694 (+ strand)
Length: 94
Type: five_prime_UTR
Position: Chr04:30485695..30485904 (+ strand)
Length: 210
Type: CDS
Position: Chr04:30487694..30488017 (+ strand)
Length: 324
Type: CDS
Position: Chr04:30488234..30488393 (+ strand)
Length: 160
Type: CDS
Position: Chr04:30488491..30488756 (+ strand)
Length: 266
Type: CDS
Position: Chr04:30488757..30489251 (+ strand)
Length: 495
Type: three_prime_UTR

>Vigan.04G210100.01 class=Sequence position=Chr04:30485601..30489251 (+ strand)
TTCTTTAAAC CACTTTCCCT TTGCATTCAC TCTGCATCTG ACTCTGCATC TGACTCCTAC TTTCCTTCAT TGTTGTTCGA
GCAGCAGAAG GAGAATGGCT GCAACATCAG TGCCTTCTCA CATGAAAGCT TGGACTTACT CGGAGTATGG CAAATCCGGC
GAAGTTCTCA AGTTTAACAG CAGCGTGGCT TTACCTCCGG TGAAGGAAGA TCAGGTCCTC ATCAAGGTCG CTGCTGCTTC
CATTAACCCC ATTGATTACA AGAGAATGGA AGGTCATTTC AAGAACTCCG ATTCCCCTTT ACCCGTAAGT AACATTATTT
CATTACCCCC AATTTCTGTT ATGCTTCGCT TTTTTCTAAC TTTTTCTCAC TTTAAATTAT AATAATTTTA ATTTTTGTTA
ACTTTGTCTT AATTTCGTTA ATGTTTAAGA AAATTGAACA AATGTTCGAC TTTTAGGAAT TGTTATATCT GATTGTTAAA
AGAAAAATTA ACCTTAATAT TTCATTGCAG TGTTTCACTA TTTACTATTT ATTTTATAAT TTAGTATTCT TATTGATTTC
TTCGACGTTA ACTTAACGTT AATTGTTCAT TTAATCAACA CGCGTAGTAA TTATTAAAAG CCAAATATTT ATTTAATTAC
CTTAAGTATT AACAAAATTT AAATGAAATT AAGATAATCA AATTGTTATA CTAAAACTTA ATTATTATTT TTATTATACT
AAAAATGAAA TAGTTTAATA CTTATTATAT TCAACTGATA ATTTGCTTTT TAAGAAATCA TAATGAAATA TAGAGATTTT
AGTAGGAATT GAGCTTAACT CATTTTTACA TAATTTCCAA TTTATTTATA AAGTAATATT GAAAATAAGA TAATATGTAT
AAGATAATTA ATACATAGGT TTGGTCAAAT TGGAATCTGT TGATTAGAGA AGGAAGTTGT TTTTTCCTGT CTTAGTTATA
CAAAATGATT TACTCATTTT ATTGATAACT AACCTTTACG GTCACCATGT ATAAAAGGAA AAAGAATAAT CTAAGTTGGC
TTGAGATAAG ATAAATAGTT TATGTCGGTG AGATTTAATC TCTTTATGAT TAATATGTTA TTGGGTCACC TATAATATTC
TTCATAAACT AAAGCGATGG CACCATGCAC GAGGAAAGTA TTGTCCACCA GTATTTGACT AAAATTAAAG TGAAAATAGT
GTATATAACT CTCATAATTG ACTGCTCAGA TCCAGATTCT AATTCACCAA TTATTAAATT TTGTTTGTCG TTCATTTACA
ATTTGGAATT GATGTTGAGT GGATTCAAAA CTAATTAATT TTACCAACTT GAAATATTTT TTCTTTTAAA TGTATGTTTT
TAGACAAGGT ACGCAAAAAG CATGCATTTT TATAAAATAT TTATCTCAAA TCAAAATAAT TCTGAATGAA GAAATTAGGT
AAGCATTTCT ACACGCTTCC AAAAGTCCGT TTGAGCAGTG ACAAATCCCA GCAAAAAACA GCCTTTGAGT TTTCTGATAC
ACATTAATTT TTTAATCGAT AATACTAAAA TATTATAAAA AAATATTATC AAAATATCGT TATCTATTTT TAATATATTA
GTTGACTGTG ACTTGTTATA TTTTTCTAAA AAAATTAAAT GTAAATGTAT AAAATTTGTT TTTATATAAA TTTTTATATG
TTTTCGTCTT TAAATTTTAA AAATAAATAA ACGTAATTTT TTTAATTTAA TATTAATTTT TTTTAATTTA TTAAACAGAT
TTTAGTTTAA TATTTTGAGA TATTTTAACT TAAATATTAG TTTGAAATAT ATTTTTTATA TTTAAAAAAT AATATCATTT
CATTAAAAAA TCATATTCAT TTGTTTTCAA AGTTTAAAAA TAAAAATATA TTAAAATTTA ATAGGAAAAT AAAAGTGGCT
AAGGTATTAA AAAAGTGGAT AACTAAATCA TACATTTGAG TGGATAACTA AAAATAAAAA AATGGCTAAG GTCATAAAAA
AGTGAGGAAT TTTTCAATTT CTAATTATAT CCTTAATTTC TTCTTTGGTA TTTGATTTTA TTTATTATTT TACGCTGGGG
GGTTGATGTG AAGACTGTTC CGGGATTTGA TGTTGCTGGA GTGGTGGTCA AAGTGGGAAG TGAAGTGAAG AAATTCAAGG
TTGGCGATGA AGTCTACGGT GATATCAATT TGAAAGCTTT GGAATATCCG AAGGTGATTG GTTCTTTGGC AGAATACACT
GCTGCAGAAG AGAGACTATT GGCTCACAAG CCACAGAGTC TGAGCTTTGT TGAGGCTGCT AGCCTTCCTT TAACACTTGA
GACAGCTTAT GAAGGCCTCG AACGAACTGG GTTCTCTGCA GGTAAATCTA TCCTTGTGCT TGGAGGTGCC GGTGGAGTTG
GAACCCATGT TATTCAGGTA GAGTAACACC TCCTGCAATG TATTCATTCA TTAATCAATA TGCCTTTTTA GATCTATCCT
TTCTGTTCTC TTATCCATAG ATTTCTTAAG GGTATAATGT GATTTTTCAT AAATGATCCT TTGTCAACTC TTTATGTCTT
CCTGTGGTCT CAAAACTTCC ATATCAATAT TTCCCGGAAA GTGATTGTAA TCAATAATGC CTTGTTGACA CAGCTTGCAA
AGCATGTATA TGGAGCATCC AAGGTAGCAG CCACAGCTAG CACCAGAAAA TTGGAGTTAT TGAGCAATTT GGGGGCTGAC
TTGCCAATTG ATTATACTAA AGAGAATTTT GAAGACTTGT CTGAAAAGTT TGATGTGGTG TATGATACAG TAGGTCAGAT
TCTGAACCCA TTCTTTTATC AGAAGAAGTC CATGAAGTTG ATCATGTATC CTGTGGAACA CTAACTTTTT TTGCCTGAAC
TCCAAAACAG GGCAAACTGA ACTGGCATTC AAGGCCTTGA AAGAAGGAGG CAAAGTTGTG ACCATAGTAC CACCTGGGTT
TCCTCCAGCT ATATTGTTCA TTCTCAGTAC TGATGGGGGT ATTTTAGAGA AACTAAACCC CTATTTTGAG AGTGGTAAGT
TGAAGCCAAT ACTTGACCCC AAGAGCCCCT TTCCATTTTC TCAGGCTGTT GAAGCATTTG CCCATCTGGA AACAAACAGG
GCAACTGGAA AAGTTGTTAT CTATCCCATT CCATGAACAT GAGCTTCTTT GTTAAAATCT ATGGTGCTCT CTACGATCCA
AAGTTTGTGT TATAACAGTG AGAAACAGTG ATAAATGTTC TCCATAACTT GAAGCTACGT TGTTTCTTTG AAGACCATGT
GTTGTAGAAT AAGCAGAATT ATGTCTTACA GGCATTGGCG TGGCTGCAAC TGAGCCTTCA ACATAGTGTG GCTTGTAATT
TCCTTTTGGG TACGTATTGT GGTTTGCAGT TTTGGCTAAT GAAATAATCA AATGGTTTTT AATATTTAGC TCTACTTTAC
GCTGCATTTT ATGGTAATTT TGGGAGACAA AAACTTTAAT TACAATCTAG TTTCATCTAA ACTTTCTCTT ACATATTCAT
GTTTGCTAAA ACATTGATGG CTTCATAAGT GAAGGCCTAA TTGTGGTGAA CTTTTAGGAA AATTGCATAT TTAGTTCTAG
TGAATAATGT GTCGTTGTTG ATCGATGCTC CCTATGAAAG TTTCTTTCTG G

>Vigan.04G210100.01
TTCTTTAAAC CACTTTCCCT TTGCATTCAC TCTGCATCTG ACTCTGCATC TGACTCCTAC TTTCCTTCAT TGTTGTTCGA
GCAGCAGAAG GAGAATGGCT GCAACATCAG TGCCTTCTCA CATGAAAGCT TGGACTTACT CGGAGTATGG CAAATCCGGC
GAAGTTCTCA AGTTTAACAG CAGCGTGGCT TTACCTCCGG TGAAGGAAGA TCAGGTCCTC ATCAAGGTCG CTGCTGCTTC
CATTAACCCC ATTGATTACA AGAGAATGGA AGGTCATTTC AAGAACTCCG ATTCCCCTTT ACCCACTGTT CCGGGATTTG
ATGTTGCTGG AGTGGTGGTC AAAGTGGGAA GTGAAGTGAA GAAATTCAAG GTTGGCGATG AAGTCTACGG TGATATCAAT
TTGAAAGCTT TGGAATATCC GAAGGTGATT GGTTCTTTGG CAGAATACAC TGCTGCAGAA GAGAGACTAT TGGCTCACAA
GCCACAGAGT CTGAGCTTTG TTGAGGCTGC TAGCCTTCCT TTAACACTTG AGACAGCTTA TGAAGGCCTC GAACGAACTG
GGTTCTCTGC AGGTAAATCT ATCCTTGTGC TTGGAGGTGC CGGTGGAGTT GGAACCCATG TTATTCAGCT TGCAAAGCAT
GTATATGGAG CATCCAAGGT AGCAGCCACA GCTAGCACCA GAAAATTGGA GTTATTGAGC AATTTGGGGG CTGACTTGCC
AATTGATTAT ACTAAAGAGA ATTTTGAAGA CTTGTCTGAA AAGTTTGATG TGGTGTATGA TACAGTAGGG CAAACTGAAC
TGGCATTCAA GGCCTTGAAA GAAGGAGGCA AAGTTGTGAC CATAGTACCA CCTGGGTTTC CTCCAGCTAT ATTGTTCATT
CTCAGTACTG ATGGGGGTAT TTTAGAGAAA CTAAACCCCT ATTTTGAGAG TGGTAAGTTG AAGCCAATAC TTGACCCCAA
GAGCCCCTTT CCATTTTCTC AGGCTGTTGA AGCATTTGCC CATCTGGAAA CAAACAGGGC AACTGGAAAA GTTGTTATCT
ATCCCATTCC ATGAACATGA GCTTCTTTGT TAAAATCTAT GGTGCTCTCT ACGATCCAAA GTTTGTGTTA TAACAGTGAG
AAACAGTGAT AAATGTTCTC CATAACTTGA AGCTACGTTG TTTCTTTGAA GACCATGTGT TGTAGAATAA GCAGAATTAT
GTCTTACAGG CATTGGCGTG GCTGCAACTG AGCCTTCAAC ATAGTGTGGC TTGTAATTTC CTTTTGGGTA CGTATTGTGG
TTTGCAGTTT TGGCTAATGA AATAATCAAA TGGTTTTTAA TATTTAGCTC TACTTTACGC TGCATTTTAT GGTAATTTTG
GGAGACAAAA ACTTTAATTA CAATCTAGTT TCATCTAAAC TTTCTCTTAC ATATTCATGT TTGCTAAAAC ATTGATGGCT
TCATAAGTGA AGGCCTAATT GTGGTGAACT TTTAGGAAAA TTGCATATTT AGTTCTAGTG AATAATGTGT CGTTGTTGAT
CGATGCTCCC TATGAAAGTT TCTTTCTGG

>Vigan.04G210100.01
ATGGCTGCAA CATCAGTGCC TTCTCACATG AAAGCTTGGA CTTACTCGGA GTATGGCAAA TCCGGCGAAG TTCTCAAGTT
TAACAGCAGC GTGGCTTTAC CTCCGGTGAA GGAAGATCAG GTCCTCATCA AGGTCGCTGC TGCTTCCATT AACCCCATTG
ATTACAAGAG AATGGAAGGT CATTTCAAGA ACTCCGATTC CCCTTTACCC ACTGTTCCGG GATTTGATGT TGCTGGAGTG
GTGGTCAAAG TGGGAAGTGA AGTGAAGAAA TTCAAGGTTG GCGATGAAGT CTACGGTGAT ATCAATTTGA AAGCTTTGGA
ATATCCGAAG GTGATTGGTT CTTTGGCAGA ATACACTGCT GCAGAAGAGA GACTATTGGC TCACAAGCCA CAGAGTCTGA
GCTTTGTTGA GGCTGCTAGC CTTCCTTTAA CACTTGAGAC AGCTTATGAA GGCCTCGAAC GAACTGGGTT CTCTGCAGGT
AAATCTATCC TTGTGCTTGG AGGTGCCGGT GGAGTTGGAA CCCATGTTAT TCAGCTTGCA AAGCATGTAT ATGGAGCATC
CAAGGTAGCA GCCACAGCTA GCACCAGAAA ATTGGAGTTA TTGAGCAATT TGGGGGCTGA CTTGCCAATT GATTATACTA
AAGAGAATTT TGAAGACTTG TCTGAAAAGT TTGATGTGGT GTATGATACA GTAGGGCAAA CTGAACTGGC ATTCAAGGCC
TTGAAAGAAG GAGGCAAAGT TGTGACCATA GTACCACCTG GGTTTCCTCC AGCTATATTG TTCATTCTCA GTACTGATGG
GGGTATTTTA GAGAAACTAA ACCCCTATTT TGAGAGTGGT AAGTTGAAGC CAATACTTGA CCCCAAGAGC CCCTTTCCAT
TTTCTCAGGC TGTTGAAGCA TTTGCCCATC TGGAAACAAA CAGGGCAACT GGAAAAGTTG TTATCTATCC CATTCCATGA

>Vigan.04G210100.01
MAATSVPSHM KAWTYSEYGK SGEVLKFNSS VALPPVKEDQ VLIKVAAASI NPIDYKRMEG HFKNSDSPLP TVPGFDVAGV
VVKVGSEVKK FKVGDEVYGD INLKALEYPK VIGSLAEYTA AEERLLAHKP QSLSFVEAAS LPLTLETAYE GLERTGFSAG
KSILVLGGAG GVGTHVIQLA KHVYGASKVA ATASTRKLEL LSNLGADLPI DYTKENFEDL SEKFDVVYDT VGQTELAFKA
LKEGGKVVTI VPPGFPPAIL FILSTDGGIL EKLNPYFESG KLKPILDPKS PFPFSQAVEA FAHLETNRAT GKVVIYPIP*