GBrowse Details

Vigan.04G204300.01

Basic Information:
Name: Vigan.04G204300.01
Multiple alignment
Variant Information
Position: Chr04:29773237..29775217 (+ strand)
Length: 1981
Functional Information:
Description: Similar to Uncharacterized protein. [Q39802, Glycine max]
GO: Biological Process: sexual reproduction (GO:0019953)
Cellular Component: extracellular region (GO:0005576)
InterPro: Major pollen allergen Lol pI (IPR005795)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.32,0.00,0.48,0.14,6.89,1.70,303.30,0.74
Arabidopsis thaliana homolog: AT1G65680.1
Automatic updates:
Name: NM_001251731 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytokinin induced message (CIM1), mRNA.
PubMed ID: 8075399 NCBI(pubmed)
Status: Known Variant
Name: NM_001252868 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative expansin-B2-like (EXPB6), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:29773237..29773253 (+ strand)
Length: 17
Type: five_prime_UTR
Position: Chr04:29773254..29773449 (+ strand)
Length: 196
Type: CDS
Position: Chr04:29773575..29773687 (+ strand)
Length: 113
Type: CDS
Position: Chr04:29774306..29774496 (+ strand)
Length: 191
Type: CDS
Position: Chr04:29774665..29775001 (+ strand)
Length: 337
Type: CDS
Position: Chr04:29775002..29775217 (+ strand)
Length: 216
Type: three_prime_UTR

>Vigan.04G204300.01 class=Sequence position=Chr04:29773237..29775217 (+ strand)
TTGCGAATTG TGATAAAATG GCTCTGACAC TTGAACGTGC TTTATTTTAT CTACAAACCC TAGTAGTTAT ACTCTCAATA
TTCCTAGTCA ACCCTTCCTT TTGTTTCAAC CCCAAAAAGC TCTTTAACAC TTCTTATTAT GCTCCATCTG CTTCAGATTG
GTCACCTTCA CTGGCCACAT GGTATGGACC TGCTAATGGA GATGGAAGTG AAGGTAAAAG GAATGCATAG TTATTAGGAT
ATATTATAAG ATGTGTTGTA TCAAATATTG CTGCAATTAT GATTTAAATA GTTTATTTTA GTGATTATTA TATATTTTGT
CCTTAAATAT ACATGCAGGT GGAGCTTGTG GTTATGGCAA CGCTGTTGGG CAACCTCCAT TCTCTTCGTT AATATCTGCA
GGAAGCCCTC TCATTTATGA CTCCGGCAAA GGGTGTGGTT CTTGTTACGA GGTGAGAACG TTTAATCAGC ATGTAAATTT
AAACGTCTGT CACAAAACGT ATAACAATTC TAACGCTATT TTCATTACTA TTCCGGACCA ATGAAATGAT GTGTATAATG
AGGCAACTTA CAGTTATCAG TTTAAGTCAA CTACACCAAC TACATTACAA AATGAAAAAA AATATTATCA AATTATTAAT
CCCAATATTA CTGAATTCAA ATATATTAAA AATGATTTTG TATTAATCCA AGTATTATCA AATTTATAAT CCAAATATAT
TATCAAATTT ATTAATCCCA ATATTACTGA ATTCAGTTAC GTCCATTTAT ACATATAATA TATTGTGTTA TGTTGAAGTC
AAGGTTAAAT ACATTTTTTT CTTCCAATTC GTTAACGTGT TTTTAAAAAT AAAAAAAATG GAGAAGTTAA AATTCTAAAA
CAAATTATAT ATTAAATGCA TATATGAACT CTAACAATGT TGTTTTAATA TAATTAATGT TGAAAAATAT ATTAGAGCTT
AATTTCCATT TTTGAAAAAG CAATAGTAAA GGAGATTCAT ATTGACAAGA TCAATGCCTC CATGAAAGAA AATTATGTTT
AGTACTTAGG TTTATTGTTC TATTTCTAGG TGAAATGCAC AGGGAATTCT GCATGCTCGG GCAACCCGGT GAAAGTAGTG
ATCACTGATG AGTGTGCTGG GTGTGGCTCA GATGCTCAAT ATCATTTTGA TTTGAGTGGC AGTGCTTTTG GAGCAATGGC
GGTTTCAGGT CAAGATCAGA ATCTACGCAA TGCAGGAAAA ATAAACATTC AACATAGAAG GTAGTATCCA AATTCTTAAT
ATCCTTATAC TTTTTCTGTA AATATTTCAA CATTCTTGAC TTTCAGTTAT ATTCTTTTGA CATATATATG TGGTTTGTGT
TTTTGTCATT ACCATATTTT CTTTTCAACC TTTAGGTTAC AATATTGCAA CTAACACATT ATTTGCAGAA TCGAATGCAA
CTATCCTGGT AAATCAATAG CTTTTCGCGT GGACTCTGGG TCAAACCAAG AGTATTTTGC TACCTTGGTT GAATATGAGG
ATGGGGATGG TGACCTTGCC AAGGTTGAAC TCAAAGAAGC ACATGATGAT TCAAATTCAT GGGATTCAAT GCAACAATCG
TGGGGTGCGG TTTGGAAACT TGACAAAGGC TCACCATTGA AGGCACCATT CTCTATTAGG CTCACCACTC TTGAGTCTGG
CAAGACCATT GTGGCCAATA ATGTGATTCC TGCTCAGTGG ACTCCTGGTC AGACTTATAG ATCAATTGTG AATTTTGAAA
CTTAAAAAGT TTTATCAAGA TATAATCTAA TCAAATGCCA TCCTATTATT AGTGGACTTT TGATTGTGTT CTGTAATATC
CCTTATCAAT GAAATTGTGC TAGTTATTAG CCATTTTAAT TATTGTTATG GGTTCATGTC TTATTTTATC TATATGCTGA
AATGAATCCT GTATTAAATT CACTGGTGAA TAAACAGACA CATTAATTAA ATAAATTAAA A

>Vigan.04G204300.01
TTGCGAATTG TGATAAAATG GCTCTGACAC TTGAACGTGC TTTATTTTAT CTACAAACCC TAGTAGTTAT ACTCTCAATA
TTCCTAGTCA ACCCTTCCTT TTGTTTCAAC CCCAAAAAGC TCTTTAACAC TTCTTATTAT GCTCCATCTG CTTCAGATTG
GTCACCTTCA CTGGCCACAT GGTATGGACC TGCTAATGGA GATGGAAGTG AAGGTGGAGC TTGTGGTTAT GGCAACGCTG
TTGGGCAACC TCCATTCTCT TCGTTAATAT CTGCAGGAAG CCCTCTCATT TATGACTCCG GCAAAGGGTG TGGTTCTTGT
TACGAGGTGA AATGCACAGG GAATTCTGCA TGCTCGGGCA ACCCGGTGAA AGTAGTGATC ACTGATGAGT GTGCTGGGTG
TGGCTCAGAT GCTCAATATC ATTTTGATTT GAGTGGCAGT GCTTTTGGAG CAATGGCGGT TTCAGGTCAA GATCAGAATC
TACGCAATGC AGGAAAAATA AACATTCAAC ATAGAAGAAT CGAATGCAAC TATCCTGGTA AATCAATAGC TTTTCGCGTG
GACTCTGGGT CAAACCAAGA GTATTTTGCT ACCTTGGTTG AATATGAGGA TGGGGATGGT GACCTTGCCA AGGTTGAACT
CAAAGAAGCA CATGATGATT CAAATTCATG GGATTCAATG CAACAATCGT GGGGTGCGGT TTGGAAACTT GACAAAGGCT
CACCATTGAA GGCACCATTC TCTATTAGGC TCACCACTCT TGAGTCTGGC AAGACCATTG TGGCCAATAA TGTGATTCCT
GCTCAGTGGA CTCCTGGTCA GACTTATAGA TCAATTGTGA ATTTTGAAAC TTAAAAAGTT TTATCAAGAT ATAATCTAAT
CAAATGCCAT CCTATTATTA GTGGACTTTT GATTGTGTTC TGTAATATCC CTTATCAATG AAATTGTGCT AGTTATTAGC
CATTTTAATT ATTGTTATGG GTTCATGTCT TATTTTATCT ATATGCTGAA ATGAATCCTG TATTAAATTC ACTGGTGAAT
AAACAGACAC ATTAATTAAA TAAATTAAAA 

>Vigan.04G204300.01
ATGGCTCTGA CACTTGAACG TGCTTTATTT TATCTACAAA CCCTAGTAGT TATACTCTCA ATATTCCTAG TCAACCCTTC
CTTTTGTTTC AACCCCAAAA AGCTCTTTAA CACTTCTTAT TATGCTCCAT CTGCTTCAGA TTGGTCACCT TCACTGGCCA
CATGGTATGG ACCTGCTAAT GGAGATGGAA GTGAAGGTGG AGCTTGTGGT TATGGCAACG CTGTTGGGCA ACCTCCATTC
TCTTCGTTAA TATCTGCAGG AAGCCCTCTC ATTTATGACT CCGGCAAAGG GTGTGGTTCT TGTTACGAGG TGAAATGCAC
AGGGAATTCT GCATGCTCGG GCAACCCGGT GAAAGTAGTG ATCACTGATG AGTGTGCTGG GTGTGGCTCA GATGCTCAAT
ATCATTTTGA TTTGAGTGGC AGTGCTTTTG GAGCAATGGC GGTTTCAGGT CAAGATCAGA ATCTACGCAA TGCAGGAAAA
ATAAACATTC AACATAGAAG AATCGAATGC AACTATCCTG GTAAATCAAT AGCTTTTCGC GTGGACTCTG GGTCAAACCA
AGAGTATTTT GCTACCTTGG TTGAATATGA GGATGGGGAT GGTGACCTTG CCAAGGTTGA ACTCAAAGAA GCACATGATG
ATTCAAATTC ATGGGATTCA ATGCAACAAT CGTGGGGTGC GGTTTGGAAA CTTGACAAAG GCTCACCATT GAAGGCACCA
TTCTCTATTA GGCTCACCAC TCTTGAGTCT GGCAAGACCA TTGTGGCCAA TAATGTGATT CCTGCTCAGT GGACTCCTGG
TCAGACTTAT AGATCAATTG TGAATTTTGA AACTTAA

>Vigan.04G204300.01
MALTLERALF YLQTLVVILS IFLVNPSFCF NPKKLFNTSY YAPSASDWSP SLATWYGPAN GDGSEGGACG YGNAVGQPPF
SSLISAGSPL IYDSGKGCGS CYEVKCTGNS ACSGNPVKVV ITDECAGCGS DAQYHFDLSG SAFGAMAVSG QDQNLRNAGK
INIQHRRIEC NYPGKSIAFR VDSGSNQEYF ATLVEYEDGD GDLAKVELKE AHDDSNSWDS MQQSWGAVWK LDKGSPLKAP
FSIRLTTLES GKTIVANNVI PAQWTPGQTY RSIVNFET*