GBrowse Details

Vigan.04G086200.01

Basic Information:
Name: Vigan.04G086200.01
Multiple alignment
Variant Information
Position: Chr04:8881566..8885558 (+ strand)
Length: 3993
Functional Information:
Description: Similar to Bifunctional protein folD. [G7L3I6, Medicago truncatula]
GO: Biological Process: folic acid-containing compound biosynthetic process (GO:0009396)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488)
InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672)
NAD(P)-binding domain (IPR016040)
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (IPR020630)
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (IPR020631)
Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (IPR020867)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.29,16.75,9.81,7.31,162.34,20.10,8.05,5.51
Arabidopsis thaliana homolog: AT4G00620.1
Automatic updates:
Name: NM_001252866 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional protein FolD-like (LOC100819231), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001255068 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bifunctional protein FolD-like (LOC100797215), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:8881566..8881782 (+ strand)
Length: 217
Type: five_prime_UTR
Position: Chr04:8881783..8881915 (+ strand)
Length: 133
Type: CDS
Position: Chr04:8883096..8883421 (+ strand)
Length: 326
Type: CDS
Position: Chr04:8883644..8883880 (+ strand)
Length: 237
Type: CDS
Position: Chr04:8884020..8884187 (+ strand)
Length: 168
Type: CDS
Position: Chr04:8884340..8884510 (+ strand)
Length: 171
Type: CDS
Position: Chr04:8884511..8885558 (+ strand)
Length: 1048
Type: three_prime_UTR

>Vigan.04G086200.01 class=Sequence position=Chr04:8881566..8885558 (+ strand)
CTTAAGAAGT CATAGTAGCC AAAGCATGAA TGCTATGCCG GATTTAAGTC TTAAAAAATA CAGAGAATCT GTCCTCTGAG
AACACCCAAT TCGTAGCATT GTCCTTGTCG TTGTCACTCT CTTTGTGCAA ATCAAAACGC GGAGAAACAT AGCAAAGCAC
AACAGAACTT ATAGGTTGCT GAATCTTTGT TTAGGGTTTG GTCACCGAAT CTCAACAATG GCTTCTTCTT TGTTCTTCAC
TCATTCCCAT TGCTACTCTT CTTCTACTTC TCTTGTTTTT CGCCTCCACC GTCAACTGGG TGTGGCTCCC ACCTCTCTCC
GGTTATCATC CTCCCATGTT GCCAACGTTG GTATGATAAA GCTATTAACT TTTCTTTCTT TCTTTCATTT TTTTGACATT
GCCAACCTTC TATCTAATTT TTGGCTTCTG GGTTTTACTG GGTTCTATTC TTTTCCCAAA AAAAAAAGTG TGCCAAAATT
TGTTTTTGTT TTAGTTTTTC TTTTTCTCTC AGTGGACTTG GAGTTTTGAG TGAAGGGTTT TGGTACCGAG TTTACCATTC
ACTGCAAAAT CGGTGTTCAG TCATTTGTCT GCTTATTTGT ACTACTTTAA TTTTCAGTTT ATCAATGTTG GTGTTTCCTT
AATAATTGGT TTAATTTGTT GTTGGCATGG AACTCAGATG TAGTCCTTTT GATTCTATTC TCTAATCAGA ATTTGAGTTA
GTTTTACCCC AGTAATTTGC ATAATAAAGA TTTTCGTGAG AGGTCAATAT GTTATTGAGC TGAAGCTCTA ATTTTTCTTA
TAGAATAACG CTTTAAGCAG TAGATTGTAT CCAACTTTTG TCCTCATCTT TATTATGGTT ATGGTGTTAG TATGTTGGAA
GTGCAAGGTT AAAGGGTGAA AAACCTTGAT CTGTTTAGTT GCAAATTTTT TAATTAGTAA TAGAGCAATG ATTTTATATG
ACTATATAGT CTTCTAGTTC TCACTTGGTA ATATATGGCT TTGTAGAGAC ATGGGCTGTG TTGCTACAGT GTGTATTAGT
GGCAGTGTTT CTCTCTGGGT TTGGCTTATG TTGCTGTTGA TTTTAGAATT ATTTTTCCTA AATTTCCCGG TGGTCAGATT
TAAGATGATA GTTTTTTCTT TGAAGAATTC GAGGTGTCTT AGCTTGTTGG ATCAAGATAT TTAGGTCTAT GGTGCGTTGG
GAAGAGCTTA TTTTCAAATT ATTTAAGTTT ATCCTCTTTG GCACAAGTGT TTGTGAGAAT TAATGAAAAC AACTTATGAT
ATGTCACTAA TTCTAAAGGT TCCTTTGTTC TTTTAATTTG TCTGCTGTTG TCATTACTTG TAAATTTAAC ACTGCTGGTT
GTTATGTTAC CTTTTACACA TGTTTGTCAG TGCGATGCAT GTACATGTAT TTACATGTAT TCCCTTACAT GTACATGCCA
AATTATCTTT CCTCTTCTTG CTATTGACTG AATAAGGTTT TGCTAGCTTG TTCTCGTGTG CCTCCATCTG AATTTATATA
ATATATGCAG CTGCCATGGC TATGGATTCT TCTGCTAAGG TGATTGATGG AAAAGCTGTA GCGAAGCAAA TCAGAGACGA
GATAACAGCT GAGGTCTCCA GGATGAGAGA AGCTACTGGT GTGATTCCAG GATTAGCTGT AATTCTTGTA GGAGATAGGA
AGGATTCTGC AACTTATGTG CGTAACAAGA AGAAGGCTTG TGAATCTGTT GGAATTAATT CTTTGGAAGC TAATCTGCCT
GAGGATTCCA CAGAAGAGGA AGTTTTGAAC TATATTTCAG GCTACAATGA TGATCCGTCA GTTCATGGCA TCCTAGTTCA
GTTGCCCTTG CCTTCGGTAT ATTTCTAGGT CTCCAACTTC ATTTTAGTTT TTGGAGCCAA GTATGCCAAA ATTTATCATT
AATCTTTTTT CCTATTTAGG TCCTTAGGGA ACTTAGTTAA GCTTTTCAGA CATGGTACAT TGATAACTCA TTCTTGTAGT
TAACTTGTTG GCACCTAAAG TACAACTATA AGATTTTTTT AATGGAAGTT TAATTAATTT TCCCTGGCCA TGTGACAGCA
TATGAATGAG CAAAACATCT TGAATGCTGT TAGAATTGAG AAGGATGTAG ATGGTTTTCA TCCATTAAAT ATCGGCCGTC
TTGCCATGCG TGGAAGAGAC CCTCTATTTG TTCCCTGTAC ACCAAAGGGA TGCATAGAGC TACTGCACAG ATACAATATT
TCCATTAAAG GAAAGAGGGC TGTTGTGATT GGTCGGAGCA ATATTGTTGG AATGCCAGCT GCTCTATTGC TGCAAGTAAT
ATTACATTCA GCCAAACTTA AACTTTTAGT TAGCAATTCA AAACTGGTTT TTATTTCATT GTCTCTGCTT GCTTCTTTCA
TTTTTTGCTT CTAACTTATG CGTTTCTACT TCTGTATATG TCTCGTGTTA CTAGAGGGAA GATGCTACTG TCAGTATTGT
CCATTCCAGA ACCAGTAACC CTGAAGAGAT CATAAGACAG GCAGATATTA TCATTTCTGC TGTTGGGAAA GCAAACATGG
TGAGGGGAAG CTGGATAAAG CCTGGTGCAG TCATCATTGA CGTTGGAATC AACCCAGTAG ATGTAAGTAG ATTTATATCA
AGGTCACGTT TATAGCAATG GCTCCAGGCT TCCACCTTGA TTGCTACTGT ATTTGAGGAG TAAATTCATA TAGAATGTGT
CAATTTCAGT ACCAACATTA TTTAAGCAAT GCATGTATGG GGTTTATTTT GCAGGATCCA AATAGCCCCC GAGGTTATAA
ACTGGTAGGA GATGTTTTTT ACGAAGAAGC CATACAAGTT GCCTCTGCCG TTACACCAGT CCCTGGAGGA GTTGGTCCAA
TGACCATAGC AATGCTTCTC CAAAATACAC TCATCTCTGC AAAGAGGGTG CACAATTTTG AATGACATTG TGAAAAGGGT
CTATACTTTT TGTTTATGGG ATTCTTGGAT TTTAAGGTAG CTTTTTTCAA CATTTGTGAA AGGGGGGTTT GAGTTTTTTC
CTTAAGCCAA AATAATAAGA GAAAATGTTG CTTAGGATGA CAGTGTAAAA CTTTTCCTTT CCTATAGTTG CATCATGATG
CAAAAATCGT GGCTGCAAAA ATAAAAATTG ATTGGGAAAA CATACAGCAA TCACATAAGA AATCATGATA TAAAAATGCT
TGTGGATGGC CTTTAAGTTG GTGCATTTTG CTTGAAATCC CATAATACAT TTTGGAGCGG AATATATTAC ACTATGCGTA
GATGCACATG AAGGATGAAG CCATACACAC TAATAATGGT AAGTACGCTG GATCATAATC AGATAAAGAA CAAAATATTC
TTAAATGGGA GGCATTGATA CTATTAATAC AATTATTTGA TGGATGACTT TGCTTCAATG TTGTTTCGAC CAAAGTTTGA
GAGTTTATAA CAATTTAAGC ATCCTACTTA ATTTAGACAT GTTGACCGGT TTTATTTTAA CTTTGGATTG ATTGTTTTAA
CTCTTTTTTC TCTAACATAA ATACCCTTTC GCGAGAAGAA TGCTACTTGG TAGAATGATC TTTGAGTAGT CTCAATATCA
AATTTTACGG AATGATAAAC TTATTATTAA ACCAAAATGT GAACAGACAA TCAAACTACA GAGCTTTGAT TACAGCCTAT
ATGGTCCCAT GTAGAACATG TACGGTTACA CTTCCTCTGT AATTCTCAAT AAAAGTACGT TTCTGCAAAT ATCTTTAATT
TTCTAGGAAC AGAGATTTAC ACTGCTTCAC AGTATCATCT GGGCTTGTAA CTGAAAAGAA AAATACAAAG TGATAAGGAT
CACATAATCA ATGCAAATGA CAATGATTCT TCGTTATTTT ACCCTACTTT GGCTTGGTTG TTAACTTTAG TTGGTTCATT
TAAGAAAAAA ATATACCAAA ATTTTGAAAA AGTTTACTAT AATTATTATT TTTTGATATT CAGAAAAAAC GTA

>Vigan.04G086200.01
CTTAAGAAGT CATAGTAGCC AAAGCATGAA TGCTATGCCG GATTTAAGTC TTAAAAAATA CAGAGAATCT GTCCTCTGAG
AACACCCAAT TCGTAGCATT GTCCTTGTCG TTGTCACTCT CTTTGTGCAA ATCAAAACGC GGAGAAACAT AGCAAAGCAC
AACAGAACTT ATAGGTTGCT GAATCTTTGT TTAGGGTTTG GTCACCGAAT CTCAACAATG GCTTCTTCTT TGTTCTTCAC
TCATTCCCAT TGCTACTCTT CTTCTACTTC TCTTGTTTTT CGCCTCCACC GTCAACTGGG TGTGGCTCCC ACCTCTCTCC
GGTTATCATC CTCCCATGTT GCCAACGTTG CTGCCATGGC TATGGATTCT TCTGCTAAGG TGATTGATGG AAAAGCTGTA
GCGAAGCAAA TCAGAGACGA GATAACAGCT GAGGTCTCCA GGATGAGAGA AGCTACTGGT GTGATTCCAG GATTAGCTGT
AATTCTTGTA GGAGATAGGA AGGATTCTGC AACTTATGTG CGTAACAAGA AGAAGGCTTG TGAATCTGTT GGAATTAATT
CTTTGGAAGC TAATCTGCCT GAGGATTCCA CAGAAGAGGA AGTTTTGAAC TATATTTCAG GCTACAATGA TGATCCGTCA
GTTCATGGCA TCCTAGTTCA GTTGCCCTTG CCTTCGCATA TGAATGAGCA AAACATCTTG AATGCTGTTA GAATTGAGAA
GGATGTAGAT GGTTTTCATC CATTAAATAT CGGCCGTCTT GCCATGCGTG GAAGAGACCC TCTATTTGTT CCCTGTACAC
CAAAGGGATG CATAGAGCTA CTGCACAGAT ACAATATTTC CATTAAAGGA AAGAGGGCTG TTGTGATTGG TCGGAGCAAT
ATTGTTGGAA TGCCAGCTGC TCTATTGCTG CAAAGGGAAG ATGCTACTGT CAGTATTGTC CATTCCAGAA CCAGTAACCC
TGAAGAGATC ATAAGACAGG CAGATATTAT CATTTCTGCT GTTGGGAAAG CAAACATGGT GAGGGGAAGC TGGATAAAGC
CTGGTGCAGT CATCATTGAC GTTGGAATCA ACCCAGTAGA TGATCCAAAT AGCCCCCGAG GTTATAAACT GGTAGGAGAT
GTTTTTTACG AAGAAGCCAT ACAAGTTGCC TCTGCCGTTA CACCAGTCCC TGGAGGAGTT GGTCCAATGA CCATAGCAAT
GCTTCTCCAA AATACACTCA TCTCTGCAAA GAGGGTGCAC AATTTTGAAT GACATTGTGA AAAGGGTCTA TACTTTTTGT
TTATGGGATT CTTGGATTTT AAGGTAGCTT TTTTCAACAT TTGTGAAAGG GGGGTTTGAG TTTTTTCCTT AAGCCAAAAT
AATAAGAGAA AATGTTGCTT AGGATGACAG TGTAAAACTT TTCCTTTCCT ATAGTTGCAT CATGATGCAA AAATCGTGGC
TGCAAAAATA AAAATTGATT GGGAAAACAT ACAGCAATCA CATAAGAAAT CATGATATAA AAATGCTTGT GGATGGCCTT
TAAGTTGGTG CATTTTGCTT GAAATCCCAT AATACATTTT GGAGCGGAAT ATATTACACT ATGCGTAGAT GCACATGAAG
GATGAAGCCA TACACACTAA TAATGGTAAG TACGCTGGAT CATAATCAGA TAAAGAACAA AATATTCTTA AATGGGAGGC
ATTGATACTA TTAATACAAT TATTTGATGG ATGACTTTGC TTCAATGTTG TTTCGACCAA AGTTTGAGAG TTTATAACAA
TTTAAGCATC CTACTTAATT TAGACATGTT GACCGGTTTT ATTTTAACTT TGGATTGATT GTTTTAACTC TTTTTTCTCT
AACATAAATA CCCTTTCGCG AGAAGAATGC TACTTGGTAG AATGATCTTT GAGTAGTCTC AATATCAAAT TTTACGGAAT
GATAAACTTA TTATTAAACC AAAATGTGAA CAGACAATCA AACTACAGAG CTTTGATTAC AGCCTATATG GTCCCATGTA
GAACATGTAC GGTTACACTT CCTCTGTAAT TCTCAATAAA AGTACGTTTC TGCAAATATC TTTAATTTTC TAGGAACAGA
GATTTACACT GCTTCACAGT ATCATCTGGG CTTGTAACTG AAAAGAAAAA TACAAAGTGA TAAGGATCAC ATAATCAATG
CAAATGACAA TGATTCTTCG TTATTTTACC CTACTTTGGC TTGGTTGTTA ACTTTAGTTG GTTCATTTAA GAAAAAAATA
TACCAAAATT TTGAAAAAGT TTACTATAAT TATTATTTTT TGATATTCAG AAAAAACGTA 

>Vigan.04G086200.01
ATGGCTTCTT CTTTGTTCTT CACTCATTCC CATTGCTACT CTTCTTCTAC TTCTCTTGTT TTTCGCCTCC ACCGTCAACT
GGGTGTGGCT CCCACCTCTC TCCGGTTATC ATCCTCCCAT GTTGCCAACG TTGCTGCCAT GGCTATGGAT TCTTCTGCTA
AGGTGATTGA TGGAAAAGCT GTAGCGAAGC AAATCAGAGA CGAGATAACA GCTGAGGTCT CCAGGATGAG AGAAGCTACT
GGTGTGATTC CAGGATTAGC TGTAATTCTT GTAGGAGATA GGAAGGATTC TGCAACTTAT GTGCGTAACA AGAAGAAGGC
TTGTGAATCT GTTGGAATTA ATTCTTTGGA AGCTAATCTG CCTGAGGATT CCACAGAAGA GGAAGTTTTG AACTATATTT
CAGGCTACAA TGATGATCCG TCAGTTCATG GCATCCTAGT TCAGTTGCCC TTGCCTTCGC ATATGAATGA GCAAAACATC
TTGAATGCTG TTAGAATTGA GAAGGATGTA GATGGTTTTC ATCCATTAAA TATCGGCCGT CTTGCCATGC GTGGAAGAGA
CCCTCTATTT GTTCCCTGTA CACCAAAGGG ATGCATAGAG CTACTGCACA GATACAATAT TTCCATTAAA GGAAAGAGGG
CTGTTGTGAT TGGTCGGAGC AATATTGTTG GAATGCCAGC TGCTCTATTG CTGCAAAGGG AAGATGCTAC TGTCAGTATT
GTCCATTCCA GAACCAGTAA CCCTGAAGAG ATCATAAGAC AGGCAGATAT TATCATTTCT GCTGTTGGGA AAGCAAACAT
GGTGAGGGGA AGCTGGATAA AGCCTGGTGC AGTCATCATT GACGTTGGAA TCAACCCAGT AGATGATCCA AATAGCCCCC
GAGGTTATAA ACTGGTAGGA GATGTTTTTT ACGAAGAAGC CATACAAGTT GCCTCTGCCG TTACACCAGT CCCTGGAGGA
GTTGGTCCAA TGACCATAGC AATGCTTCTC CAAAATACAC TCATCTCTGC AAAGAGGGTG CACAATTTTG AATGA

>Vigan.04G086200.01
MASSLFFTHS HCYSSSTSLV FRLHRQLGVA PTSLRLSSSH VANVAAMAMD SSAKVIDGKA VAKQIRDEIT AEVSRMREAT
GVIPGLAVIL VGDRKDSATY VRNKKKACES VGINSLEANL PEDSTEEEVL NYISGYNDDP SVHGILVQLP LPSHMNEQNI
LNAVRIEKDV DGFHPLNIGR LAMRGRDPLF VPCTPKGCIE LLHRYNISIK GKRAVVIGRS NIVGMPAALL LQREDATVSI
VHSRTSNPEE IIRQADIIIS AVGKANMVRG SWIKPGAVII DVGINPVDDP NSPRGYKLVG DVFYEEAIQV ASAVTPVPGG
VGPMTIAMLL QNTLISAKRV HNFE*