VIGGS:Variant information

Chr04:8881566 - 8885558

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
8881682	C	T	53	2136.77	1.00	DOWNSTREAM(\|2484\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|3305\|\|None\|Vigan.04G086100.01), UTR_5_PRIME(\|101\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882392	G	A	61	2394.77	1.00	DOWNSTREAM(\|1774\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4015\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882513	A	C	47	1990.77	1.00	DOWNSTREAM(\|1653\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4136\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882827	A	T	46	1832.77	1.00	DOWNSTREAM(\|1339\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4450\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882859	T	G	53	2061.77	1.00	DOWNSTREAM(\|1307\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4482\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882959	G	T	63	2391.77	1.00	DOWNSTREAM(\|1207\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4582\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8883202	T	A	54	2093.77	1.00	DOWNSTREAM(\|4825\|\|None\|Vigan.04G086100.01), DOWNSTREAM(\|964\|\|None\|Vigan.04G086300.01), SYNONYMOUS_CODING(SILENT\|acT/acA\|T80\|None\|Vigan.04G086200.01)	Vigna nepalensis
8884274	T	G	60	2327.77	1.00	INTRON(\|\|\|None\|Vigan.04G086200.01), UTR_3_PRIME(\|1046\|\|None\|Vigan.04G086300.01)	Vigna nepalensis
8884753	A	G	46	1842.77	1.00	UTR_3_PRIME(\|243\|\|None\|Vigan.04G086200.01), UTR_3_PRIME(\|567\|\|None\|Vigan.04G086300.01)	Vigna nepalensis
8884825	G	T	45	1772.77	1.00	UTR_3_PRIME(\|315\|\|None\|Vigan.04G086200.01), UTR_3_PRIME(\|495\|\|None\|Vigan.04G086300.01)	Vigna nepalensis
8884904	T	C	48	1961.77	1.00	UTR_3_PRIME(\|394\|\|None\|Vigan.04G086200.01), UTR_3_PRIME(\|416\|\|None\|Vigan.04G086300.01)	Vigna nepalensis
8885473	T	C	72	2803.77	0.99	INTRON(\|\|\|None\|Vigan.04G086300.01), UTR_3_PRIME(\|963\|\|None\|Vigan.04G086200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
8881831	A	ACTTCTTCTT	46	2274.73	1.00	CODON_INSERTION(\|act/aCTTCTTCTTct\|T17TSSS\|None\|Vigan.04G086200.01), DOWNSTREAM(\|2334\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|3455\|\|None\|Vigan.04G086100.01)	Vigna nepalensis
8882022	CA	C	53	1461.73	1.00	DOWNSTREAM(\|2143\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|3646\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8882536	C	CT	44	1563.73	1.00	DOWNSTREAM(\|1629\|\|None\|Vigan.04G086300.01), DOWNSTREAM(\|4160\|\|None\|Vigan.04G086100.01), INTRON(\|\|\|None\|Vigan.04G086200.01)	Vigna nepalensis
8884869	TAC	T	46	1943.73	1.00	UTR_3_PRIME(\|360\|\|None\|Vigan.04G086200.01), UTR_3_PRIME(\|449\|\|None\|Vigan.04G086300.01)	Vigna nepalensis