GBrowse Details

Vigan.04G050800.01

Basic Information:
Name: Vigan.04G050800.01
Multiple alignment
Variant Information
Position: Chr04:4548631..4552409 (+ strand)
Length: 3779
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5X7, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.58,0.24,37.40,25.25,7.87,14.21,560.67,11.25
Automatic updates:
Name: NM_001253261 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aquaporin NIP2-1-like (LOC100788071), mRNA.
PubMed ID: 23771580 NCBI(pubmed)
Status: Known Variant
Name: NM_001367513 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative Si transporter NIP2-1 (NIP2-1), mRNA.
PubMed ID: 23771580 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:4548631..4548883 (+ strand)
Length: 253
Type: five_prime_UTR
Position: Chr04:4548884..4549024 (+ strand)
Length: 141
Type: CDS
Position: Chr04:4549130..4549354 (+ strand)
Length: 225
Type: CDS
Position: Chr04:4551241..4551435 (+ strand)
Length: 195
Type: CDS
Position: Chr04:4551524..4551585 (+ strand)
Length: 62
Type: CDS
Position: Chr04:4551788..4552031 (+ strand)
Length: 244
Type: CDS
Position: Chr04:4552032..4552409 (+ strand)
Length: 378
Type: three_prime_UTR

>Vigan.04G050800.01 class=Sequence position=Chr04:4548631..4552409 (+ strand)
TATAGGGCGA CATTGAAGCT GGGAAAGCCC ATTGAAGGTG AGTGACGTAA TCGAAGTGTC ACCCAATTTC ACGGTCTACT
CTTTAGGAAT TTTTATTTCT CACACCTACT TACTCACCAT GTGGAATAGA TGAACCAAGA GGTACTCGCA TTTCTGGCAT
TATAAAAGGA CCGATTATCA TCCACTTCTA TCATAGATAG CTAACATACA CTTCACTTCT CTCAGATACT AGCCTGGTCC
ATAGTAACCA ACAATGGAAG GTACCAGCCC AAACACGTTT ACCTTCATCA CCACCACCAT CGACGCTCCA AGTCCAAGCA
ACCCTGAGAT ATCACCATCT CCTTCTGCTC TTTCAGGACT CGCACAAACT TACCCTCCTG GTTTTTCCAG AAAGGTAACA
GTTAATTAAC CCATCTTCAT TTCTCTTTAT CATATCATAC TTTCGTTGCT GTAAATGTGA TTACGATTAT CATTAATTTG
GAGGGATTGG ATGTGGCAGG TGTTTGCGGA GGTTATCGGA ACGTTTCTGT TGGTGTTCGT GGGAAGTGGT TCTGCGGGTC
TCAGTGTTAT TGATGAGAGC AGAGTGTCAA AGCTCGCAGC TTCGCTTGCT GCAGGACTCA TCGTCACAGT GATGATTTAC
TCAATTGGAC ACATTTCTGG AGCACACATG AACCCTGCGG TTTCCCTTGC TTTTGCTGCC GTGAGGCATT TTCCGTGGCC
ACAGGTGCGT CCGTATTGAG ATTTTTGTTT TTCTCGACAA CCGTGTCCCT ATAATTATAA AATAATTCAT TTTACTATGT
TCTTTCTATA ATATAATAAT CTTCTTCACC ATGCTGGATT CATTAAACAT TGATATTGGT TTCCACACGT CTCGATGGAC
ACAATTATGT GTTAAGACGG AGTTTGTTTT CCTTGTTTTT TACTATCTCG ACGGAGATTG GTAACTACAG TTTGAAAATA
TTGCTGATTA AGAGCATGTT GAGCTTAGTT TAATTTAATT AATTCAAAAT AGTTCATTAG AGTTGACATA GACTATTCGC
CTGAGTATTC AAATTTTGTT GTCATTATCG TTTTTAAAAA ATGTTTAATC TATAAATATC TGTTTCTATG ATTTTTCTTT
TAGAGAATAT GTTATCCTTC TGTGATACTG TAAAATTCAA AATAAGTCTT TTATATTAAT TCTTCATCAC TGCTTTAAGA
GGAATTAGAC AGGTTCCCAT ACAGTTTTCA CCAAAGCTCT GTTTCTAAAC TGGAATGGAG TTTATACTTG ATTTATTACT
TTAATTTCAT TTTTTAGACT CTGCATCCTA CACGTAACAT GTGTAACTTG TGTAGCTGAG CTAAATATGT CATTCTTGTC
TCCAATTTTG TCACTAATAA TTGATGGTTA ATATTACATT AAATCTTCAA ATGCACAGTG CACACTAATC AGTTTGATTG
ACCAAGAGAT TCAGGTCTCA CCACAACTTC TATTTCAAAA TGTTCTCCAA TAGAAAGGCC TCATTAATCA TAAACCAGTA
CTAATTAACA CAATAACAGA CTACAATGAT TAAAAATAAC TATATACCGG GTGGTGTGAC ATAAATAATA TTATATTATT
TCTTATGGTT GGCGTATAAA TAATCAGAAA ATGATAAGCA TAAACATTTC ATTACTCTGA ACACCTCATT GATAATACAC
ATTATTTTTA TATGTTTTTT CTTCTTATCA TATCATAGAT TATATATTTA ATCCTATCTC ATCTCGGGAG TATTTTATTA
AACTCTTCAC AAGATCTTCA TAATTTTTTT CTGTAAGCTG TGGTGTAATA GAAATATCTG TCAGGCCAGA CTGATTTGAA
AAGGTTCAAC GAATTTACCA TGGAATATAT AAAAAAGAAA TTGTAATAGT AAAAGGGCGA AATATCTCAT TCAAGTGATC
TTGAAACCAA GCTGACTCTG TATGGTTGAA GTCATCACCA AAAGGGTTCA GCCAAGAGAA AAAAAGAAGT AATGGTCAAT
TTCAAGCCTC ACCGTGGACC CACGGTAATG TGTGTGTATT TGCAGCCAGA AACAATCAGA AATGTTCAAT AAATATGTGG
TCCATAAATC CCTTATGAAT CTATACCATA TGTGATGGAT TTGAACCACT CTTCTGCCCC CAAATAACGC GGAATAAATG
ATCGGATACT CATTGTTTAC AGAACTAACA CAAAAATAGT GAAAGAATCC TTATGCTCTG TTTTTAATCC TGAATGTTTA
GTAAGATATA TAAGATATTC TTCAACTAAC GTTCTTAAGA TATTTTTAAG TAAAACGTGA TAAATAGTTT ATATTAAAAG
AACAGATACC TCCCCCTGTA CTCCACAATG ATTTCAAATT TTGTAAGCTC TGCATTATTT GTATTTGAGT AGAAAATTAA
TAGGTTTAAT TCAATTTGGA GCCGACACAA GATGACAAGA ATGACAATAG AAACGGTCAA CGAGTAGTAC TTGAATTTAG
AATAAATTCT TTGCAGATAA AGGTCTATAG GGTAAAAAAA AAATTATAAA TTTGATTTCT TTTCTCATTT TTGATCAATT
TGACACTTTG TACCCAGACA TGAATAAATA ATCCAATGGT TTTGTTGCAG GTCCCGTTTT ACGTAGTAGC TCAACTCACT
GGATCCATTT CTGCTTCATA CACATTGCGA GAGCTTTTCC AGCCATCAAA GGAAATTGGG GGAACAACAC CTGCTGGATC
ACATATCCAA GCACTGATCG TGGAAATGGT GACTACTTTC ACCATGGTGT TCATTTCCAT GGCCGTGGCC ACTGACACAA
ACGCTGTAAG AATACTGTAA ATTTTTTACA ACTTTCAATT ACATCATCCA AACATGATGG TGTCCCTAAC CTTAACATGT
TGTAATTTGG CAGACAGGAC AACTATCAGG AGTAGCAGTA GGTTGTTCTG TTAGCATATC AAGCATTGTT GCCGGGTAAG
TCAAGGGAAA AAAAAAGTGT TCCTCACTCA CACACACACA CGCACAAACA CAATTTTATG TTACAGGAAT TGCATGAGCA
CAGGAAAAAT AAAGTTAAAA AGGGAGAGTC ACAATTTGGC AAGGCTATAT GCACATACAT GCATGACAGA AGGAAATGTT
TTGAAAATTA TTGTTGTTGT GATGTCCATG TATACAGACC AATATCGGGG GGATCAATGA ACCCAGCAAG GACATTAGGT
CCTGCAATTG CAACATCAAC CTACAAGGGA CTTTGGGTAT ATTTTGTTGG ACCAATTACT GGGGCAGTTT TAGCAGCATG
GTCTTACAAC GTGATTAGGG ACACGGAACA CCCTGGTTTT CCATTTTCAC TATCCTCCCT TTCATTCAAG GTACGCCAAA
GCGTTAGTGG AACCAAAACC GACCAACGAA GCTTGGTTTG AAAACAACCG TGTAATGTTT TCCACACCGC CCAAATCAAC
GTCACCTTGA ATGTCTTGTC ATCGAGGATC TCAAGTTCCA CATGTAGTAT CATCAATGCC ATACTACACC ATGGTATTAT
TAGTTTGTCC ATGTATGAAC TTTGAGGGTT ATGATGAGCC ATGTATAATG CAAAAATGTG TAGTGTGTTT ATCCTACATT
AATGAAATGT CAGTTTCATA TGAAATGCAA TGCAGACAAC AAATCGGATG CTATTAATGC TAATTGAATG CTCGCCCAAG
CTGGTTGTGT GTGTGTAAGA GATTAATATC ACATAATATT CTCAAATTTA ACATCAATAA TACACCTACA CAAATCCATA
TCCATCAAGT GCTTTGCCA

>Vigan.04G050800.01
TATAGGGCGA CATTGAAGCT GGGAAAGCCC ATTGAAGGTG AGTGACGTAA TCGAAGTGTC ACCCAATTTC ACGGTCTACT
CTTTAGGAAT TTTTATTTCT CACACCTACT TACTCACCAT GTGGAATAGA TGAACCAAGA GGTACTCGCA TTTCTGGCAT
TATAAAAGGA CCGATTATCA TCCACTTCTA TCATAGATAG CTAACATACA CTTCACTTCT CTCAGATACT AGCCTGGTCC
ATAGTAACCA ACAATGGAAG GTACCAGCCC AAACACGTTT ACCTTCATCA CCACCACCAT CGACGCTCCA AGTCCAAGCA
ACCCTGAGAT ATCACCATCT CCTTCTGCTC TTTCAGGACT CGCACAAACT TACCCTCCTG GTTTTTCCAG AAAGGTGTTT
GCGGAGGTTA TCGGAACGTT TCTGTTGGTG TTCGTGGGAA GTGGTTCTGC GGGTCTCAGT GTTATTGATG AGAGCAGAGT
GTCAAAGCTC GCAGCTTCGC TTGCTGCAGG ACTCATCGTC ACAGTGATGA TTTACTCAAT TGGACACATT TCTGGAGCAC
ACATGAACCC TGCGGTTTCC CTTGCTTTTG CTGCCGTGAG GCATTTTCCG TGGCCACAGG TCCCGTTTTA CGTAGTAGCT
CAACTCACTG GATCCATTTC TGCTTCATAC ACATTGCGAG AGCTTTTCCA GCCATCAAAG GAAATTGGGG GAACAACACC
TGCTGGATCA CATATCCAAG CACTGATCGT GGAAATGGTG ACTACTTTCA CCATGGTGTT CATTTCCATG GCCGTGGCCA
CTGACACAAA CGCTACAGGA CAACTATCAG GAGTAGCAGT AGGTTGTTCT GTTAGCATAT CAAGCATTGT TGCCGGACCA
ATATCGGGGG GATCAATGAA CCCAGCAAGG ACATTAGGTC CTGCAATTGC AACATCAACC TACAAGGGAC TTTGGGTATA
TTTTGTTGGA CCAATTACTG GGGCAGTTTT AGCAGCATGG TCTTACAACG TGATTAGGGA CACGGAACAC CCTGGTTTTC
CATTTTCACT ATCCTCCCTT TCATTCAAGG TACGCCAAAG CGTTAGTGGA ACCAAAACCG ACCAACGAAG CTTGGTTTGA
AAACAACCGT GTAATGTTTT CCACACCGCC CAAATCAACG TCACCTTGAA TGTCTTGTCA TCGAGGATCT CAAGTTCCAC
ATGTAGTATC ATCAATGCCA TACTACACCA TGGTATTATT AGTTTGTCCA TGTATGAACT TTGAGGGTTA TGATGAGCCA
TGTATAATGC AAAAATGTGT AGTGTGTTTA TCCTACATTA ATGAAATGTC AGTTTCATAT GAAATGCAAT GCAGACAACA
AATCGGATGC TATTAATGCT AATTGAATGC TCGCCCAAGC TGGTTGTGTG TGTGTAAGAG ATTAATATCA CATAATATTC
TCAAATTTAA CATCAATAAT ACACCTACAC AAATCCATAT CCATCAAGTG CTTTGCCA

>Vigan.04G050800.01
ATGGAAGGTA CCAGCCCAAA CACGTTTACC TTCATCACCA CCACCATCGA CGCTCCAAGT CCAAGCAACC CTGAGATATC
ACCATCTCCT TCTGCTCTTT CAGGACTCGC ACAAACTTAC CCTCCTGGTT TTTCCAGAAA GGTGTTTGCG GAGGTTATCG
GAACGTTTCT GTTGGTGTTC GTGGGAAGTG GTTCTGCGGG TCTCAGTGTT ATTGATGAGA GCAGAGTGTC AAAGCTCGCA
GCTTCGCTTG CTGCAGGACT CATCGTCACA GTGATGATTT ACTCAATTGG ACACATTTCT GGAGCACACA TGAACCCTGC
GGTTTCCCTT GCTTTTGCTG CCGTGAGGCA TTTTCCGTGG CCACAGGTCC CGTTTTACGT AGTAGCTCAA CTCACTGGAT
CCATTTCTGC TTCATACACA TTGCGAGAGC TTTTCCAGCC ATCAAAGGAA ATTGGGGGAA CAACACCTGC TGGATCACAT
ATCCAAGCAC TGATCGTGGA AATGGTGACT ACTTTCACCA TGGTGTTCAT TTCCATGGCC GTGGCCACTG ACACAAACGC
TACAGGACAA CTATCAGGAG TAGCAGTAGG TTGTTCTGTT AGCATATCAA GCATTGTTGC CGGACCAATA TCGGGGGGAT
CAATGAACCC AGCAAGGACA TTAGGTCCTG CAATTGCAAC ATCAACCTAC AAGGGACTTT GGGTATATTT TGTTGGACCA
ATTACTGGGG CAGTTTTAGC AGCATGGTCT TACAACGTGA TTAGGGACAC GGAACACCCT GGTTTTCCAT TTTCACTATC
CTCCCTTTCA TTCAAGGTAC GCCAAAGCGT TAGTGGAACC AAAACCGACC AACGAAGCTT GGTTTGA

>Vigan.04G050800.01
MEGTSPNTFT FITTTIDAPS PSNPEISPSP SALSGLAQTY PPGFSRKVFA EVIGTFLLVF VGSGSAGLSV IDESRVSKLA
ASLAAGLIVT VMIYSIGHIS GAHMNPAVSL AFAAVRHFPW PQVPFYVVAQ LTGSISASYT LRELFQPSKE IGGTTPAGSH
IQALIVEMVT TFTMVFISMA VATDTNATGQ LSGVAVGCSV SISSIVAGPI SGGSMNPART LGPAIATSTY KGLWVYFVGP
ITGAVLAAWS YNVIRDTEHP GFPFSLSSLS FKVRQSVSGT KTDQRSLV*