GBrowse Details

Vigan.03G205500.01

Basic Information:
Name: Vigan.03G205500.01
Multiple alignment
Variant Information
Position: Chr03:32909200..32914135 (- strand)
Length: 4936
Functional Information:
Description: Similar to Proteasome subunit beta type. [C6SV91, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.91,32.51,76.78,56.64,142.42,186.22,76.12,65.68
Arabidopsis thaliana homolog: AT1G21720.1
Automatic updates:
Name: NM_001251061 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome beta subunit C1 (LOC100499664), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:32909200..32909501 (- strand)
Length: 302
Type: three_prime_UTR
Position: Chr03:32909502..32909550 (- strand)
Length: 49
Type: CDS
Position: Chr03:32910423..32910517 (- strand)
Length: 95
Type: CDS
Position: Chr03:32911475..32911559 (- strand)
Length: 85
Type: CDS
Position: Chr03:32912046..32912135 (- strand)
Length: 90
Type: CDS
Position: Chr03:32913611..32913718 (- strand)
Length: 108
Type: CDS
Position: Chr03:32913818..32914005 (- strand)
Length: 188
Type: CDS
Position: Chr03:32914006..32914135 (- strand)
Length: 130
Type: five_prime_UTR

>Vigan.03G205500.01 class=Sequence position=Chr03:32909200..32914135 (- strand)
TGGTGGCTTA ACCCCAAAGA AATCTGGGAT GCTCTTCGTC TTCAAATACC AACATTATTT TACGATTTAA CCCCAAACCC
AAACCCAAAC CAAGAATCTG CATCATCCTC GCCGGGATCA AATTCAAAGC ATGTCGATCT TCGAGTACAA CGGAAGCGCC
GTCGTGGCCA TGGTCGGCAA GAACTGCTTC GCCATTGCCA GCGACCGAAG GCTCGGCGTT CAGCTCCAAA CCATAGCCAC
CGATTTCCAA CGCATTTCCA AGATTCACGA TAAGCTCTTC ATCGCTCTCT CTGGCCTCGC CACCGATGCT CAGACTCTGT
ACTCTTTACT CTCCCTTCTC GATTTCCCAA TTCATTACTT TTCTGCCAAC ACAAATCTTA TTTTTGACTG TATTTGTTTT
CCATTACTTA CTTTAAGGTA TCAGCGTCTC GTTTTCCGGC ACAAACTGTA TCAGCTTCGT GAAGAGAGGG ATATGAAACC
GGAGACCTTT GCCAGTTTGG TCTCTGCCTT GCTCTATGAG AAAAGGTAAC GCCGCTTAGA TCTAAGGAAA AAAAAACGGT
TCTGGATTTC TTTTGAAGGA ATATTTGTTG TAAGTTTTTA TTTTTTGGTG CTGTTACAAA TGGGGTTTTC CTAGTGAAGT
ATTGTAGGTT GTTATGGGTG AGTTTTAGCT GAGTTGATTG ATACCCTTGT GTGTAAAGTA GTTTTCTTTT TGTATATGAT
TCACGGTTTG CCTTCAAGTT GGCAAGGTGG TTTTAAATTT TTATTTTTTT TACATTGAGG TATATTAAGT AGTGACTGTG
TTTGTATGTC TTTTTCCTGA AGCCCCAACA AGACACATAG TAACACTCCT GGTAATTGGC TTTTGTCAAA TAGGAAGTGG
AACACATACA ATTTTGTTTC TGAAATTAAT TTAACTAATA ATAGAACATA CTTAAAAGAA TGTGGTAAGG GCGTATTGCT
AGTATATTTC TGATAAATAT TCCTTTCTGG ACTTAGCTGA GACTGAAGTT CCGTTTGCAA AATACCTGTT GCACACTCCT
TTCTATTTTT TGCGTTCCCT TAAAAAAACA AGATAGTTTT CCATTTTCCC TTCATCCTTC CCATTTTTAC CACTCAAGTA
GTTTATCTAT TAATCATGAC TTGATTTGAT AATGAGCTAG ATTTTGGTCT TAAATAAATA ACTAAAAAAA AACCAGGACT
TAACCGGGGT GGAATCTAGT TTGTTACTTG TGTACTTGAG CATGTTTTAC ACACACGAGC ATACTAAGTC AATGATTGGC
CCAGTTGTTT TGGCTTTTCT TTTAAGAAAA AGCCGGGCAA CAAATTTGGA GAGAAACACT TCAGGATCAT ATTTCTTCTA
AATTTGGAGA GAAACACTTC AGGATCATAT TTCTTCTAAA AGAAAGCGGG TTGGGGGAGC TTTTAAGCTA ATATTTCCAA
ACTTGGTCTT ATAAGTTAAA ACTCTCACAA CGTTTGGTTT TGTTTTTAAA GAAGAATACT TGTCAAAAAA GTTGTGCCAA
ACTTAGCGTT GTCAAAAAAT ATCAGGGTTT TGATAATTAG TCTACAATAG ATAAGCTTTA TTATTGCGTA AGATGTAAAA
TCCTCATTAA ATTGTTTTGG CAACTGAAAT TTAATGTGTA GAGTTTTGAA ATGAGACTGA GTTATCAGTG CTATGTGAAG
GTTTAGTTTA AAGATGGTTT GATTAAATCT CCTTTTTGAC TCAGCATATG GTGTGGGGGG AGTCATTTGG TTGCATTATG
GTGTGGGGGG AGTCATTTGG TTGAATTCAT TTTTTTAATG TGTGACCAAT AGCTCATTGT AGGTTGAAGT TGAACCATAC
TTAATTTCTG TATTTACTTT TGGCTCCCTC TGCATGTTTG TAGACGGGGT TACAACAAAG CACAGTAAAC TATAAGATTC
ATAAGTTTCT TGTTATGTTA AATTGTTAAT AAACTCTAAT TTATAGTAGT GAAAACAAGT TTTCATCTTT TGCTTTTCAG
GTTTGGTCCA TATTTTTGCC AGCCTGTAAT TGCTGGATTA GGGGACGATG ACAAACCATT CATTTGCACA ATGGATTGTC
TTGGAGCAAA GTAAGTTAAA TTTTTCTACA CTACTGTCCA TATTAAATCT TGTAGAGGGA TCTTGCTGGT ATGTGTAAAA
ACTTGCAAAT GTTAGTATCA TTTGCTTTTC AATCCGTTTT CAAAGATTAG TATAGGTACA GATAAAACCA ATGGAAAGTT
ATATTTAGTG TTTCTTATTG GAAGACAGAA CTGAATTGAA GACAAGGTGG TAGCTTTGTA ATTGAAAAAG GAAAACAAGA
AATGAAACTG GAAGTAAACA TGCTCTAATA AAAGATAAAA GCAAGTTGTA GTTGACAAAC AGCGTGGTTC AAAAAAGAAG
TGATAGAGAT GGACGGAATT TGTGAGACTA GAAGCTAAAA TTTTGTACTT ATCAAACAGA AATGATGTTG CCTTTTATGC
ATTTTTTCAC TTAAATTAAA TAAACTTTTA AGTTTGCATA TCGTCATATG CACTGCATGT ATGTAATTGT TTATCTTACA
ATTTTCTTGT ATGCAGGGAG CTTGCAAAAG ATTTTGTTGT TTCTGGCACT GCATCCGAGT CCCTGTATGG TGCTTGTGAG
TCAATGTTTA AGCCTGACAT GGTTGGTCAC TAAGATTATC CTGTTTTGTC TTTCAGATAA CTCTTTAATG TGATTATTAT
GCAAATCAAT GTAGTCATGT TTTACGTTAC TTTAACATGG ATACTTTATT ATTGTTAGGG TTGTTCCTGA GTGAGTTTTA
ATGGAGTTGG AGAGAAAATA AAATTCAAAC CAATAAATTT CATTGGTTTG GGTTTTTCGA CAGAAAAAAA GATCAAAATC
AGAACAAAAC CAACCCAATC AAGAACTGGT TGGTTGTATT TGGATCAATT GGATCTAATT ATGTGCAAAT ATACCAAATT
CTATTTTGAG AAAAAGAAAA AGAACATAAT TTTTCCAAAA AGTTTGTACA TAATTTTATC ATTAATTTTG CCCAAAACTT
TGTACTTAGT TAGGTTTGGT TCATTGGATT TGTAAATCTT AAATCGACAC CCCAAACTAA TCACCATTGA ATTTGATTGG
TCTGGTTTGG GTTAGATGCA GTTTTTCTAA AAATCCAACT CTATTTGATT GGTTTGGTTT GGATTATAAG GATGATCCAA
ACAGATGAAC ATCATTCATC TATACATAAT TAATCAAATC ATCATGGGTT TTATTTAAAG CTTAAGAAGA TTGACTAATT
ATTCTGCAAG TAATTTCATG AGATATCTTG TTTGGTATGG GAGGAAGTAA CTGCAGAGAC AAATTGGGTT ACCAAACATA
AACTTTAGTG AAATGTCTAA TAACTATGGG GTTGTTGGAT GGGCACGAGA TGTTTTATGT TGTGTTAGTC TCGGATACAA
ATATAAGAGA CAAGTAATGC TTTGATATTG CCTTGATTTT CCGTTTGGTT TCAGTATCAG AGTTTTCCAC TGTCATTCTA
GTGATTTAAC TACAAAGGTT TCTTAGTCAT ATTTTTTCGG TGTTTGTTAA AGAGATGCAG CTTAAGATTT TTTTGCTTGG
CTTCTGATCT TGACACAGGA ACCAGAGGAG TTGTTTGAGA CCATCTCCCA AGCACTGCTA TCGTCTGTAG ATCGTGATTG
TTTAAGTGGT TGGGGAGGAC ATGTCTATGT TGTGTAAGTT TACAAATTCT GATTCTCTTA GTAATTTGGT GTATATGCTG
TCATTGTCAA TTTCGGTGCC ATTACTAGAA CATTTATTTT ATATGCGCTT GTCTTTCTAA CCAGCCACGA GGCACTAAGT
TGTGACTTTT GCATGTGCAT GAAATAATTT TGATAAGAAG CCATGATAAA ACATCCATAG TAGGGAAACT TCCTTATGCT
ATTTAGTTAC GATTCATTTT TATGGATTGT AATTAGAACC TTGGGAGAAT TAAACTACAG AAGTTAGTTG TCTCATTTGG
AGAATCCAGA GATAAACCCC CTACTAAAAT ATCATATTTC CAATGTTGGA CTTAAGCCCC AGCACGGATG CAGCTGGCTG
TGCACTAGTT ATTGGAGTAG TTCTGCCTCT GGCAAACACT GCAGTAGTCA GCCTCACCAC CCACGCATCT CGTCTGCAGC
CGAGAGACAT GGTGGAAGGT GCCCATACCA ATTTAATAGG CACAAAGTTG ACAAAGAATA TAGAGTTGAA CTTGAATTTT
GACAAAACTC AAAACACAGC ATCGTTGGTG CCAAGGCAAA AGAAATACTA AATTGGCTAC AATGACTTGA GAAATTTCTC
AGAAAGTCAG TACAGTCATA ATTCAATCTT ATAAAACTCA CATGTAATAT AATTTGGTAA TATTTTTAGT CAATGTGAGA
TTTCTTCCAA GAATGTCCTT ACATAAATGA AGAGCATCTG CATATCCTCA TGGCAATACA TCTCTGTTTT CTTTTGTCAA
ATCTGCCCCC TCCAACCTAT TGCCAGATGC CATTTATTTA GGTCTGGTTT TATGCCTGTT AATTTATTCC AAGGGCTTAT
TGGTATCTTG ATTTGTCTTA TGCAGTACAC CAACTGAAGT AAAGGAAAGG ATTTTAAAGG GAAGGATGGA TTAACTTTGT
AAGACAACTG GGTTTCTGTT TGGTTTGGAG CTGAATAGCA TGGCATTTAC CATTGTTGTA GAGTGGTACC TTGTTATTGT
GGCTTTTAGT TAAAATGTAC CCTGACTGTT TTTATAGACG GTCTCAATTG TTCTATATTT AGATTACCAG GGAAAGGAGA
TTCTTGAGTT TCTATGCTTC AGGCAGACAG GGTTGAATGA TACGAGAATT GCCTGATCTA TATCTCTCCC GTTTATGTTT
TATTCTATCA GTGTCCTAGT ATTAATTTCG AGAAATTGAT AATTCTTTTT CAAAAA

>Vigan.03G205500.01
TGGTGGCTTA ACCCCAAAGA AATCTGGGAT GCTCTTCGTC TTCAAATACC AACATTATTT TACGATTTAA CCCCAAACCC
AAACCCAAAC CAAGAATCTG CATCATCCTC GCCGGGATCA AATTCAAAGC ATGTCGATCT TCGAGTACAA CGGAAGCGCC
GTCGTGGCCA TGGTCGGCAA GAACTGCTTC GCCATTGCCA GCGACCGAAG GCTCGGCGTT CAGCTCCAAA CCATAGCCAC
CGATTTCCAA CGCATTTCCA AGATTCACGA TAAGCTCTTC ATCGCTCTCT CTGGCCTCGC CACCGATGCT CAGACTCTGT
ATCAGCGTCT CGTTTTCCGG CACAAACTGT ATCAGCTTCG TGAAGAGAGG GATATGAAAC CGGAGACCTT TGCCAGTTTG
GTCTCTGCCT TGCTCTATGA GAAAAGGTTT GGTCCATATT TTTGCCAGCC TGTAATTGCT GGATTAGGGG ACGATGACAA
ACCATTCATT TGCACAATGG ATTGTCTTGG AGCAAAGGAG CTTGCAAAAG ATTTTGTTGT TTCTGGCACT GCATCCGAGT
CCCTGTATGG TGCTTGTGAG TCAATGTTTA AGCCTGACAT GGAACCAGAG GAGTTGTTTG AGACCATCTC CCAAGCACTG
CTATCGTCTG TAGATCGTGA TTGTTTAAGT GGTTGGGGAG GACATGTCTA TGTTGTTACA CCAACTGAAG TAAAGGAAAG
GATTTTAAAG GGAAGGATGG ATTAACTTTG TAAGACAACT GGGTTTCTGT TTGGTTTGGA GCTGAATAGC ATGGCATTTA
CCATTGTTGT AGAGTGGTAC CTTGTTATTG TGGCTTTTAG TTAAAATGTA CCCTGACTGT TTTTATAGAC GGTCTCAATT
GTTCTATATT TAGATTACCA GGGAAAGGAG ATTCTTGAGT TTCTATGCTT CAGGCAGACA GGGTTGAATG ATACGAGAAT
TGCCTGATCT ATATCTCTCC CGTTTATGTT TTATTCTATC AGTGTCCTAG TATTAATTTC GAGAAATTGA TAATTCTTTT
TCAAAAA

>Vigan.03G205500.01
ATGTCGATCT TCGAGTACAA CGGAAGCGCC GTCGTGGCCA TGGTCGGCAA GAACTGCTTC GCCATTGCCA GCGACCGAAG
GCTCGGCGTT CAGCTCCAAA CCATAGCCAC CGATTTCCAA CGCATTTCCA AGATTCACGA TAAGCTCTTC ATCGCTCTCT
CTGGCCTCGC CACCGATGCT CAGACTCTGT ATCAGCGTCT CGTTTTCCGG CACAAACTGT ATCAGCTTCG TGAAGAGAGG
GATATGAAAC CGGAGACCTT TGCCAGTTTG GTCTCTGCCT TGCTCTATGA GAAAAGGTTT GGTCCATATT TTTGCCAGCC
TGTAATTGCT GGATTAGGGG ACGATGACAA ACCATTCATT TGCACAATGG ATTGTCTTGG AGCAAAGGAG CTTGCAAAAG
ATTTTGTTGT TTCTGGCACT GCATCCGAGT CCCTGTATGG TGCTTGTGAG TCAATGTTTA AGCCTGACAT GGAACCAGAG
GAGTTGTTTG AGACCATCTC CCAAGCACTG CTATCGTCTG TAGATCGTGA TTGTTTAAGT GGTTGGGGAG GACATGTCTA
TGTTGTTACA CCAACTGAAG TAAAGGAAAG GATTTTAAAG GGAAGGATGG ATTAA

>Vigan.03G205500.01
MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IALSGLATDA QTLYQRLVFR HKLYQLREER
DMKPETFASL VSALLYEKRF GPYFCQPVIA GLGDDDKPFI CTMDCLGAKE LAKDFVVSGT ASESLYGACE SMFKPDMEPE
ELFETISQAL LSSVDRDCLS GWGGHVYVVT PTEVKERILK GRMD*