VIGGS:Variant information

Chr03:32909200 - 32914135

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SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32909205	G	T	61	2459.77	1.00	UPSTREAM(\|97\|\|None\|Vigan.03G205400.01), UTR_3_PRIME(\|297\|\|None\|Vigan.03G205500.01)	Vigna nepalensis
32909271	A	C	58	2192.77	1.00	UPSTREAM(\|163\|\|None\|Vigan.03G205400.01), UTR_3_PRIME(\|231\|\|None\|Vigan.03G205500.01)	Vigna nepalensis
32909612	G	A	76	3040.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|504\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32909824	T	C	54	2407.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|716\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32909828	A	T	54	2404.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|720\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32910702	C	A	54	2428.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|1594\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32910704	G	C	54	2428.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|1596\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32910782	T	C	56	2274.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|1674\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32910974	A	T	62	2530.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|1866\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32911106	C	A	54	2177.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|1998\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32911428	T	A	53	2232.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|2320\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32911455	G	A	49	1930.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|2347\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32912725	A	G	54	2002.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|3617\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913104	G	A	56	2216.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|3996\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913204	A	T	58	2335.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|4096\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913296	C	T	58	2377.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|4188\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913456	C	A	54	2499.77	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|4348\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913640	A	G	53	2009.77	1.00	SYNONYMOUS_CODING(SILENT\|agT/agC\|S89\|None\|Vigan.03G205500.01), UPSTREAM(\|4532\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913712	C	T	61	2493.77	1.00	SYNONYMOUS_CODING(SILENT\|caG/caA\|Q65\|None\|Vigan.03G205500.01), UPSTREAM(\|4604\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32914034	T	C	39	1782.77	1.00	UPSTREAM(\|4926\|\|None\|Vigan.03G205400.01), UTR_5_PRIME(\|29\|\|None\|Vigan.03G205500.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
32909369	TTGAGACCG	T	55	2431.73	1.00	UPSTREAM(\|262\|\|None\|Vigan.03G205400.01), UTR_3_PRIME(\|125\|\|None\|Vigan.03G205500.01)	Vigna nepalensis
32909826	TC	T	52	2501.73	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|719\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32912906	CA	C	29	1056.73	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|3799\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32913441	TAC	T	50	2249.73	1.00	INTRON(\|\|\|None\|Vigan.03G205500.01), UPSTREAM(\|4334\|\|None\|Vigan.03G205400.01)	Vigna nepalensis
32914044	TGGTTTG	T	47	2055.73	1.00	UPSTREAM(\|4937\|\|None\|Vigan.03G205400.01), UTR_5_PRIME(\|40\|\|None\|Vigan.03G205500.01)	Vigna nepalensis