GBrowse Details

Vigan.03G201600.01

Basic Information:
Name: Vigan.03G201600.01
Multiple alignment
Variant Information
Position: Chr03:31448892..31450374 (- strand)
Length: 1483
Functional Information:
Description: Similar to Histone-lysine N-methyltransferase SUV420H14-20, putative. [XP_007019001.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.84,19.80,11.62,16.27,17.49,19.06,17.91,11.45
Arabidopsis thaliana homolog: AT4G08240.2
Automatic updates:
Name: NM_001250715 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305595 (LOC100305595), transcript variant 2, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001352509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305595 (LOC100305595), transcript variant 1, mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:31448892..31449304 (- strand)
Length: 413
Type: three_prime_UTR
Position: Chr03:31449305..31449484 (- strand)
Length: 180
Type: CDS
Position: Chr03:31449969..31450037 (- strand)
Length: 69
Type: CDS
Position: Chr03:31450118..31450285 (- strand)
Length: 168
Type: CDS
Position: Chr03:31450286..31450374 (- strand)
Length: 89
Type: five_prime_UTR

>Vigan.03G201600.01 class=Sequence position=Chr03:31448892..31450374 (- strand)
AAACAATATT TCACCGCCGT TGAAAGGGGA GGAAAGGAAG AGAATCTCAA ACTTCGGTTT GATTAGAAAA AACAGAACAG
AGAGATAAAA TGTCAATGAG AGGAATCGGA GGGCCACTTC TATGCATCGG AGATCTTCTG AACGACGTCG GAGAAGAACA
ACAAGGACAC TCTCTCCGTC GCGAAGCTTC TCCCACTCCC TCCTCTTCCC ATCTCAACGA TAACGATCCA CCTCCTAACC
TCCTCACACT CTTCCAGGTT CGTTTTTTGT ACTTTTCATC TATTGTCCCT TCAGATTGTA AGTTGCGTTA AAACGACATT
CCTTTTCGTC GTTTTAGAAA CATTACGATC ACTTGAATTC GGCTCTCTCC GGCACCGACC ACTCTTGGAC TTCTCTCACT
TTGAAGGTAT CGTGCCATTC CTCTCAATCC CTAACCCACG ATAAGCCATC ACAATAGAAT AATTCAAACT TAGGTGAATA
AACTAAATCT AAAAAATAGG ACAAGGTAGG AAAATTTCAT TTTAGGCTTC CTCTTATTAT TATTATTATT ATTACTATTA
TTATTATTAT TATTATTATT ATTATTATTA TTATTATTAT TGTTAGAGTT TAATTTCTAT GCATCAGGGT AGAAAAAATT
GTATAACTTT TAAGGTAGTT ATGTTAAAGT TCAATAAGCT TAGTATCGAT GACAATTTGT GATAAGAGGG TAATGTATAA
TCCTTTTACT ACATTGTGAA TGTATAAATG ATGTATTTAT CTATCATTGT TATGATTATC GTTATTGGTT CATGAGGGAA
GGGCAAGGGG ATTTAGTAGT TCATCCTCAT GTTCTCACTA TTAATCTGTC TTCATATTCA ACTTATTATT ATTTTACCGT
TTTTGTTCAG TTATGCACTT CTTTAGAAAC TGCTAATCAG TTGGTTCAGT CGACCAACTC AAATGTTGCA TCCTTGTCAG
AGAAGGTTGA GGAACTGCAG AAAATTGTTA AGAGAGGGGA TTCGGCGATA GCAGCAGCGA AGGCACTTTA TTATGTTACC
CCTGACAATC ACAGTAGTGC CTCAAAGTGA AACAAGGTTA GTAAAATTGT ATATCTGGTA TGATTGGACA GGGTATTTGT
TATGGTGTTT ATTTTTAGTC CAATAGAAGG ATTTTTTGCT ATATGGAGAG AAAGACATTC AATACTGAAA AGTTGTCAAA
ATCTTATGGC TACAAATTTC CAGCAGTTAT TTTTTATTTG CAGGGCTATT GTTTATTTCT TATGTTTTTT TTTTATGTCA
TTTATTTTAA GAGCGACAGC CGGAACATAG TGTTTCATTG CTGACCATGA ATTTAGTTTC ACATACATCT GTGGATGGTT
TGAGTTAGCA CTCTGATTCT ACAGCATCAA AACTGAATAA GAACAGAAGT ACGATTCAAT CAATTTTTGT TTAAATTGTA
GTTGATCACC ATGGGGCATA TTATCTTTGC AGTGATGCTT TCA

>Vigan.03G201600.01
AAACAATATT TCACCGCCGT TGAAAGGGGA GGAAAGGAAG AGAATCTCAA ACTTCGGTTT GATTAGAAAA AACAGAACAG
AGAGATAAAA TGTCAATGAG AGGAATCGGA GGGCCACTTC TATGCATCGG AGATCTTCTG AACGACGTCG GAGAAGAACA
ACAAGGACAC TCTCTCCGTC GCGAAGCTTC TCCCACTCCC TCCTCTTCCC ATCTCAACGA TAACGATCCA CCTCCTAACC
TCCTCACACT CTTCCAGAAA CATTACGATC ACTTGAATTC GGCTCTCTCC GGCACCGACC ACTCTTGGAC TTCTCTCACT
TTGAAGTTAT GCACTTCTTT AGAAACTGCT AATCAGTTGG TTCAGTCGAC CAACTCAAAT GTTGCATCCT TGTCAGAGAA
GGTTGAGGAA CTGCAGAAAA TTGTTAAGAG AGGGGATTCG GCGATAGCAG CAGCGAAGGC ACTTTATTAT GTTACCCCTG
ACAATCACAG TAGTGCCTCA AAGTGAAACA AGGTTAGTAA AATTGTATAT CTGGTATGAT TGGACAGGGT ATTTGTTATG
GTGTTTATTT TTAGTCCAAT AGAAGGATTT TTTGCTATAT GGAGAGAAAG ACATTCAATA CTGAAAAGTT GTCAAAATCT
TATGGCTACA AATTTCCAGC AGTTATTTTT TATTTGCAGG GCTATTGTTT ATTTCTTATG TTTTTTTTTT ATGTCATTTA
TTTTAAGAGC GACAGCCGGA ACATAGTGTT TCATTGCTGA CCATGAATTT AGTTTCACAT ACATCTGTGG ATGGTTTGAG
TTAGCACTCT GATTCTACAG CATCAAAACT GAATAAGAAC AGAAGTACGA TTCAATCAAT TTTTGTTTAA ATTGTAGTTG
ATCACCATGG GGCATATTAT CTTTGCAGTG ATGCTTTCA

>Vigan.03G201600.01
ATGTCAATGA GAGGAATCGG AGGGCCACTT CTATGCATCG GAGATCTTCT GAACGACGTC GGAGAAGAAC AACAAGGACA
CTCTCTCCGT CGCGAAGCTT CTCCCACTCC CTCCTCTTCC CATCTCAACG ATAACGATCC ACCTCCTAAC CTCCTCACAC
TCTTCCAGAA ACATTACGAT CACTTGAATT CGGCTCTCTC CGGCACCGAC CACTCTTGGA CTTCTCTCAC TTTGAAGTTA
TGCACTTCTT TAGAAACTGC TAATCAGTTG GTTCAGTCGA CCAACTCAAA TGTTGCATCC TTGTCAGAGA AGGTTGAGGA
ACTGCAGAAA ATTGTTAAGA GAGGGGATTC GGCGATAGCA GCAGCGAAGG CACTTTATTA TGTTACCCCT GACAATCACA
GTAGTGCCTC AAAGTGA

>Vigan.03G201600.01
MSMRGIGGPL LCIGDLLNDV GEEQQGHSLR REASPTPSSS HLNDNDPPPN LLTLFQKHYD HLNSALSGTD HSWTSLTLKL
CTSLETANQL VQSTNSNVAS LSEKVEELQK IVKRGDSAIA AAKALYYVTP DNHSSASK*