GBrowse Details

Vigan.03G178000.01

Basic Information:
Name: Vigan.03G178000.01
Multiple alignment
Variant Information
Position: Chr03:26616422..26621880 (+ strand)
Length: 5459
Functional Information:
Description: Similar to Uncharacterized protein. [I1MAW4, Glycine max]
GO: Cellular Component: mitochondrion (GO:0005739)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit VIb (IPR003213)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:156.71,115.48,117.71,50.81,227.49,103.25,126.49,65.12
Arabidopsis thaliana homolog: AT1G22450.1
Automatic updates:
Name: NM_001249391 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306272 (LOC100306272), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:26616422..26616589 (+ strand)
Length: 168
Type: five_prime_UTR
Position: Chr03:26616590..26616631 (+ strand)
Length: 42
Type: CDS
Position: Chr03:26617758..26618030 (+ strand)
Length: 273
Type: CDS
Position: Chr03:26618132..26618214 (+ strand)
Length: 83
Type: CDS
Position: Chr03:26618312..26618393 (+ strand)
Length: 82
Type: CDS
Position: Chr03:26621402..26621455 (+ strand)
Length: 54
Type: CDS
Position: Chr03:26621456..26621880 (+ strand)
Length: 425
Type: three_prime_UTR

>Vigan.03G178000.01 class=Sequence position=Chr03:26616422..26621880 (+ strand)
TTTTTTAACT AATTTTTTTT TTCCTGACTT TTCCGAATAT TTTAACCATA AAACCTTATA CAAACACGAA CACGAACACG
AACACGATCT CAATCTGTTT AAGCTTTTCG AGTTTTGACC TACAACACTC GAATCCTCTC TTGTGTTGTA GCCGCCTCGT
GACCATCAAT GGCGGAAACT GCTGCCGACA AATCTCAATC TCTCGCCGAG GTATCCTTCC TTCATCTCTC TTTAATCTCT
CTCCCCTTTT CAGTTCCGCT TCCAGAATCT TCCTTTTCAA TGGAGTTCAG CTAATCTCAT TAACCATCGA ATTTACAAAT
CAGACCTTGA TTTTGTTGTC TCACAATCTG TAGTTCCTCG AACTAAATCT AGATTAGGTT TCAGCTGCGT TTTTTTTTTT
CCTTTGGTGG TAGTGTTTTT TAAAGTGCTT TCTAGTGTAT GGATTAAAAA TATAAAATTG AGCTTGACAC AATCCCTTAC
ATTTTCCAGC TTTTATATCT ACTGATAATT GTAAGCCTGA TCTATATCAT GGGCACCGAA TTAAGTCTCT ATGTTGGCGG
AATAACGTTA TTCCTGGGTC TATTGTTTTT TATTTTGGTA GAATTGGTGT TGTATTGGAA CAATTGAGGT TTAAAATATT
TATTTATGTT TGGGAATTTT TAAAATGAGT TTAGAAGGAT TCGTTTTTTG TTTGTATGAT AATGTAAAAT CACTTTTGAA
CTGTTATTAT AGATATGCTC AGTGGGTGTC TACATACTGA ATTAGTCTTC CCAACGGAGA AAGAGCAGAT CTTAATTCTA
TCAAAATTAA TTCTACGCAG AATGATTTTG AATAAAAAAG AAGCCCAAAC AGAAGTGCTG TTGGAATGAG TTTTCTTTGT
GGCAATTGGG ATTTTGAATC AACCAAGTTG GCATTTCATT CCATTTTACT TCAATTTTTC TTTTATTTTG TATGGCTTGT
ATAACTATAA AGACAAAAGT ATTTGACATG AGCAACATTA TGACATTGGG GCTTTTGCAA CTTATATGTA TGTATGTATG
TATGCTTACT CCTATAGCAT ATGCCTAAAT AATGAAATTA CCAGCATTAA ATGTTGTTGG ATAGATCGGT TATGTAAATT
CCATGTCATG AACATTAAAA CCTCCGTAGA ATTGCTAAGG TAAGATGCGT TTCCAGCTTC TAACTTTCCC GTTTGGTATT
GATGATCTTT TCCCTCAATT TCCTCAGCTC AATTTACAAA TTTTATGCCT CCAATCAGCA TTCTTTTACA CTCTGATGGT
TGGTTTTTTG TTTCATAGTG TTAGATAAGG AAGTGACATG CTTTATTGGC TTGCAGGAAT ATCATGTAAG TGACAAGCAG
GAGAAAACAG CTGTAGTTGA AAAACCCGTT GAAGTCAAAG AAGTTGAAAA CCCACAGGAG GCTGGTTCTG TAGAAGCTGT
TGTTGAGAAA ATTGTGGAAG AAACAACTCC TGTTGCCCCT GCAGTTGCTC AGGAGAGCAG TGAAGTAAGC CCTCCTGCTG
CTGAAGAAAG CACTGAAGAG CAAAGTAGTG GAAATGTTGA GGATAAATCT GGCAATGAAG ACGCAGCTGA AGAGACCCCT
GAAATCAAGG TGATATTTAC TGAATCACTT TATAGAATTG GTACACAAGT TCCTGATAAG CAAGGTTGGC ACTCCTTCAA
TGTTTTAATA TTTGTGCTAT TATTTTCCAG CTTGAAACTG CTCCAGCAGA TTTCCGTTTT CCAACTACAA ATCAAACCAG
GCATTGCTTT ACCCGATACA TTGAATATCA TCGGTGAGTT ATATATGGTT GACTTTTATT TCTAGTTAGC TCATTGTTCA
CATTTCTCAA ACACTGTTAC TTTATTTTAA TATACCAAAT TCTTGTGCAG ATGTGTAGCT GCAAAGGGTG AAAGTGCATC
AGAATGTGAC AAGTTTGCTA AGTATTATCG TTCTCTTTGC CCTGGTGAAT GGGTATGTAT TTTACCATTG AACATTGTTT
ATTATCTACT AAGTGCTAGG GTCTTTTTAT CCAACGAGAT TTACACTTCC TTTTGATAGA ATAAAATTTC TATCTGTTTA
TGGTCTTTTA ATATTCCTTT GCATAGAAAT ATAGTTACAT TTTTACAAGT AATATAATTT TTTATAAATT TTGTCTGGTA
TTCTACAATT TAGCATTGCT TTTGTTTTCT ATGCTATTCT CAAGATATTT GACTAAATGC TAAATTGAAA AGGTATTGAA
AGATGGACAG ACGTTGATAT CTATAAAAAA TGACTAAAAT AATAACTTAT TAAATATGTA AGGATGCTTT ATGGAGAGGA
AGACTTCCTT GTTTTTGTGT ATAAAGAGAT TAGAGGAAGC TCTTAAGATG TTGTTAATGT TCCTGTATAT TGATAGATGC
ATGATACTTT GCCCTTCAGT TTTAGCTTCT AGATGTAAAT TAATTTCTGT CTACTCATGT CATCTCTATG CCATCTTTAA
TACGTTATTA TTCCTTCATC CCTTTAATTA TTATGGCTTC TTAACCATTT GAATTCATAC TGAGAACTTG GGAGATGTAC
TATATTCCTT CTCAATAAAC CATGCTTTAG TCACCTGATA ATGTTCTTCA TATGAAGATC TTCATTTTTT TAAAATGATT
AGAATCAATT TTGTTGTTTA CCATGATTAG CGTCTCCTTG AATAGAAAAG CCACAATTGA TGTAAAGCAA TGACAGGAGA
ATAAATTCAA CGTATTGTAG ATGAGTGTCC GTTGGATGAG TGGAAATCCT TGACAAGATA GGAGAGAGAA TGAATGTCTT
GAAAAGTGTA TTGTAGGAAA TACATTAGAA TCTTTACTTA GGTGGTTCAA ACATTTGTGA AGACCTATTC TGGCTCTAAT
CAGGGGACTA ATCACATGAT AGATAACCCT ATAGCTAAAG ATGATGAGAA AAAAATCACG TCATGATTTT GTCCATGTAG
TTGACCTCAC TTAGTATTAG GGATGGCAAT ATGGACTGGC TTGTCCCCCA TGTGGCTTGC AAAAGACAGC TCAGGGTGAA
CCCGTTAACA TAACAATCAC GAGCTAGTTT TGTTGACCCT TTTCACATAA TGATTGGCCT GCAGACCTGT AACCATTCCA
CATAAGCAAA ATTGATGAGG GCTAACCTCG AGGGAGTGTT TGTTTAAATA AATACTATTA TATTTAATGT TGTCTAAATT
GTGAGAAAAC TCAAACTTGC TCTATGTTTA AATAAATACT ATTATATAAG CATGGTAGTC AAAATCGCTC TTCAACATGT
GGAAACAGCG AGTCTCACAA TGTGGTCTCT CCCAATAGTG AGGGAGAAGC CGGCAGAAAT TGCGATTGAG AAGCCGATAG
ACCTTGCGGC TGAGCTGCCT CAGTGGCGAC TATAGCAGTA CTGGTGGTGG CGCAACCTTG AAGCTGACCT CTTTCATGAG
TTGTGGTATA CAACTCTAGG GTTTTTTAGT GGGTTGGAAT TGGACCCATT TTAAAACATT AGCCCATTTT GTTTAAAATA
CTTTTAGCCC AATTAGTAAA TGACTCTGTA AACTGCCCCA AAAAATTAAA CTGACTCTTT GAAATCTTTG AAAACCTTTA
CTGCACTGAA AAAGTAAAAA AAACAGTAAT TCCCTCTCTT TATCGTAAGT GAAGAAAACT ACAACTGCAC GCTCAAAAAT
TAAAAAGCAA TTACTCTCTC TTCTTTAAGT GAGGAAAATT GACAATGCAC ACTAAAAACT GCCACTGCCG CTCTTCCTTG
ATTAAAATGT ATCTAGACTG CCGCTCTTCC TTCTTTAAAA CACAAAAATC CCTACCCCAT TTAGTCTCAT TCCAATTCAA
TCTATTTTTC TCTCTTTGTA TTTTAATGAA ATATAATGAT TTTCTGTGTG AATATCAATT TCATAAAATT TGTAGGATCT
TACTATCTGT GTTAGAATTT ACTATCCGTG TATGATTTAT AAGATTGATT TGATGGATTT GGAAAGGAAG GTGGGAAAGG
TTGTGGATTC AATTTTCCCA CTAATAAAAT ATTAACAGCT AATGTTTGCC GATAAAAAAA ATCACTGCCA TCATAGACAA
CCATCAGAGA ACTCACGCAA CTCCCTGATG CCGCTAGCTT CATCGTTGTT GGCATTGCAA CTCACACTAC TGTCATCGCT
GGAGCTGCTT TTGTAGCGCT TGCCCTTTGT TCCAATCATT CTACTATTAT GCTCTCTCTA TGTTTTGCTC TTCTGCTCTT
TTTGGTTCTT CTGCCATTTT GCTCGCCGTG TCTTTCCTTC AAATTCGATA AAGAACATAT GACCAAATTT TAGTTGTGAT
TTAGATCTTA CTACATTAGA CTTGAGTTAT TTTTATCATT TATATTAGTT TTAATGCGTG CACAAGTTTA TGATTATAAT
CTTGTGTATT CAAGTTACGA TTTGGCATCC CTTTTCTGAT CCTCTTATAT CCTCTCGAGT TTGACAATGT CAGGAACATT
TGGTTACGTT TGACTATTCT CTTGTCAAAA TCTAAAATAA TTTAAATAAA AATGGAAGCT ACATGTGTAG AAGACAACTT
CTGATATTCG TTATTTTCCA ACCTGCTCAT GGGAATTGAA ATGTAGAACA TGATAAAAGT GGAAGTTACA ACTTCCCAAT
GGATCATAAT ACCCAGGAAT ACTTTTTAAA TGATTTAACA AACATGGAAA TGTCACATTC TAATGAATAT ATTTCTTATC
AGTTAAACAA CATATTCCAA ATTTCACATT TAGAACTTGG CCTCAGTTCA AAGTTATCAT GGGTAATACT TAGTATTTTC
ATTTTCAATA GCAGTTTACA CATAAATGTT TGATTTTTTG TTTCATTTCT TGTTTTTTGC TAATGGCTTG CTTAGACATT
CCAAAAACTG TTCATTAGTT TCTTTATTCC TGCTACTGCT AATCTTGAAA TTGTGGAGGT GTGCTAACAA CCTGTTTTCA
TAACTTTGTC TATGCATCAG ATTGACAGAT GGAATGAACA AAGGGAGAAC GGAACATTCC CAGGCCCGCT GTAGGTGGTG
CATATTTGAA ATGGCTGCTC AATTCGTTGT GCAGTGTTAT ATTTGAAATC GTTAGACATA AACTCCCATA CATTTGGGGA
ATTAATAAGA AATTTTGGAT CCATGTTTGA ACTAAGCTCG AGTTATACTA TTTTCAGGAA GGGCTGGAGA AATGTCCAGA
GATAAATTTT ACATTTTTAA TTGGATTATC AGTACTGTAG TCTTCTATAA ATTTCATCCC CTTCTATTGA ACAAAAAACG
TTTATTTTGA CAATTTTCTC ACTTAGTTAT AACAATTATT TGAGAAAAAT AGATTTAGTT GAGAGAATAG ATAGGGAAAC
GGAGTGATGT ATAATTTGGC CAATAAAACA GGAAAAATGA GGTTTTGCAA AGTTAGAGAG AGCATTGCTT TCATATTTTA
TTTGTTAATT TCTCTTTAC

>Vigan.03G178000.01
TTTTTTAACT AATTTTTTTT TTCCTGACTT TTCCGAATAT TTTAACCATA AAACCTTATA CAAACACGAA CACGAACACG
AACACGATCT CAATCTGTTT AAGCTTTTCG AGTTTTGACC TACAACACTC GAATCCTCTC TTGTGTTGTA GCCGCCTCGT
GACCATCAAT GGCGGAAACT GCTGCCGACA AATCTCAATC TCTCGCCGAG GAATATCATG TAAGTGACAA GCAGGAGAAA
ACAGCTGTAG TTGAAAAACC CGTTGAAGTC AAAGAAGTTG AAAACCCACA GGAGGCTGGT TCTGTAGAAG CTGTTGTTGA
GAAAATTGTG GAAGAAACAA CTCCTGTTGC CCCTGCAGTT GCTCAGGAGA GCAGTGAAGT AAGCCCTCCT GCTGCTGAAG
AAAGCACTGA AGAGCAAAGT AGTGGAAATG TTGAGGATAA ATCTGGCAAT GAAGACGCAG CTGAAGAGAC CCCTGAAATC
AAGCTTGAAA CTGCTCCAGC AGATTTCCGT TTTCCAACTA CAAATCAAAC CAGGCATTGC TTTACCCGAT ACATTGAATA
TCATCGATGT GTAGCTGCAA AGGGTGAAAG TGCATCAGAA TGTGACAAGT TTGCTAAGTA TTATCGTTCT CTTTGCCCTG
GTGAATGGAT TGACAGATGG AATGAACAAA GGGAGAACGG AACATTCCCA GGCCCGCTGT AGGTGGTGCA TATTTGAAAT
GGCTGCTCAA TTCGTTGTGC AGTGTTATAT TTGAAATCGT TAGACATAAA CTCCCATACA TTTGGGGAAT TAATAAGAAA
TTTTGGATCC ATGTTTGAAC TAAGCTCGAG TTATACTATT TTCAGGAAGG GCTGGAGAAA TGTCCAGAGA TAAATTTTAC
ATTTTTAATT GGATTATCAG TACTGTAGTC TTCTATAAAT TTCATCCCCT TCTATTGAAC AAAAAACGTT TATTTTGACA
ATTTTCTCAC TTAGTTATAA CAATTATTTG AGAAAAATAG ATTTAGTTGA GAGAATAGAT AGGGAAACGG AGTGATGTAT
AATTTGGCCA ATAAAACAGG AAAAATGAGG TTTTGCAAAG TTAGAGAGAG CATTGCTTTC ATATTTTATT TGTTAATTTC
TCTTTAC

>Vigan.03G178000.01
ATGGCGGAAA CTGCTGCCGA CAAATCTCAA TCTCTCGCCG AGGAATATCA TGTAAGTGAC AAGCAGGAGA AAACAGCTGT
AGTTGAAAAA CCCGTTGAAG TCAAAGAAGT TGAAAACCCA CAGGAGGCTG GTTCTGTAGA AGCTGTTGTT GAGAAAATTG
TGGAAGAAAC AACTCCTGTT GCCCCTGCAG TTGCTCAGGA GAGCAGTGAA GTAAGCCCTC CTGCTGCTGA AGAAAGCACT
GAAGAGCAAA GTAGTGGAAA TGTTGAGGAT AAATCTGGCA ATGAAGACGC AGCTGAAGAG ACCCCTGAAA TCAAGCTTGA
AACTGCTCCA GCAGATTTCC GTTTTCCAAC TACAAATCAA ACCAGGCATT GCTTTACCCG ATACATTGAA TATCATCGAT
GTGTAGCTGC AAAGGGTGAA AGTGCATCAG AATGTGACAA GTTTGCTAAG TATTATCGTT CTCTTTGCCC TGGTGAATGG
ATTGACAGAT GGAATGAACA AAGGGAGAAC GGAACATTCC CAGGCCCGCT GTAG

>Vigan.03G178000.01
MAETAADKSQ SLAEEYHVSD KQEKTAVVEK PVEVKEVENP QEAGSVEAVV EKIVEETTPV APAVAQESSE VSPPAAEEST
EEQSSGNVED KSGNEDAAEE TPEIKLETAP ADFRFPTTNQ TRHCFTRYIE YHRCVAAKGE SASECDKFAK YYRSLCPGEW
IDRWNEQREN GTFPGPL*