GBrowse Details

Vigan.03G102800.01

Basic Information:
Name: Vigan.03G102800.01
Multiple alignment
Variant Information
Position: Chr03:10546414..10549513 (+ strand)
Length: 3100
Functional Information:
Description: Similar to Cbs domain protein. [T2DP18, Phaseolus vulgaris]
GO: Molecular Function: adenyl nucleotide binding (GO:0030554)
InterPro: CBS domain (IPR000644)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.53,35.69,119.09,72.21,41.07,240.30,106.75,77.99
Arabidopsis thaliana homolog: AT5G10860.1
Automatic updates:
Name: NM_001249282 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527191 (LOC100527191), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250733 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CBS domain-containing protein (LOC100306364), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:10546414..10547310 (+ strand)
Length: 897
Type: five_prime_UTR
Position: Chr03:10547311..10547568 (+ strand)
Length: 258
Type: CDS
Position: Chr03:10547664..10547745 (+ strand)
Length: 82
Type: CDS
Position: Chr03:10548433..10548506 (+ strand)
Length: 74
Type: CDS
Position: Chr03:10548755..10548815 (+ strand)
Length: 61
Type: CDS
Position: Chr03:10549031..10549173 (+ strand)
Length: 143
Type: CDS
Position: Chr03:10549174..10549513 (+ strand)
Length: 340
Type: three_prime_UTR

>Vigan.03G102800.01 class=Sequence position=Chr03:10546414..10549513 (+ strand)
GGTATTCTTC TTCTTCCTCT TATTCTTTTT CTTCTTCTTC GTAATCTCAT CTCACCTTTC CATCGTCCTG TGATCCATGT
ACCATTCTTT CAGTTTGAGC TTTTATGTTT GGAAATGAAG GATCTTAACT TGTGGTTGAT ATGTTGTTAT TTTGGGTGAT
CATCAATGTA AAATATAAGG GTCCACGTCT CACCCATCTT AATTTAATTC GAAAGGGATA CTGGTTGGTC AGATTTGAAT
GAAAAAAATA ATAAAGGCTT CTTAGTTTAG TTAAGGTTGT ATTGATGCTG ATGTGGGTAG GGTTGTGGTG TGTTTATTGA
TTTGGTTTCT CGGGGACTGT TTTTGTGAGC TTTTATATAT TTACATCCAA TCTTCATCCC TTGGCGATCT AAGAAAGAAA
TCTGAACAGA AAGGAGAGGT GAGAGTGTGA TTCAACTTTT TTTGTCCGTA TGGGGATTGG ATCTGCAAAT TCTGCATGTT
TCACTGTTTT TTGTTTTTTT CTGTAAATAT TTTGACATAT TTTCAGCTTC TGATAGGTGA TTTTTTTTCT TCTAACATGT
CTCGACTTTC CCGTTTGAGA TTCTTCTATG GATATAGAAG ATAAGTAAAT CAAATGATTC CTCTGATTTG AGCCAACTAT
TTGTTAATTG GACACGAGGG TTATTCTGTT CTCGGAACAC AGATCTTGGA TCTAATTGGA GTAATGATTT CTGTGACTCC
AAAACTAGTT CTATAGAATC TCCCGATTTG CATGTAGTTT GTTCTTGTAC GGTTCTTTTC GGAGTACGAT TTTCATTGGT
TAATTTTGTC AAAATCTGTG CATGGATATA CTTGAGACTA ATTAAACTGC AAAATCGAAA ATTCTAAGAT GTTCTATCTG
GTTGTTAGAC AGCTACAATG CAAGGAGGAT TAAGAACATT TTTGTCCAAC GGGAATGTCA TTAAAAATGC TGTTCTGCAA
CGGGTTCGCA TGGTGAATCC CCTGTTGCAA CCAATCGCCT CCTCACGGTT TGAATCTGTT ACACCTGCTC GCATTGAGGA
ACATGGTTTT GAGAGCACAA CAATTGCGGA CATCATGAAA GACAAAGGCA AGGGTGCAGA TGGATCCTGG CTCTGGTGCA
CCACAGATGA TACTGTTTAT GATGCTGTTA AATCGGTAAT ATGTATTTGA TTTTATTGCA ATTGTTTTTG GAATAAATCT
GGGAGTTTAC AATGGGTTGA TGTATGTTCT TACATTGACA TCCATTGCAG ATGACCCAAA ACAATGTTGG GGCTCTGGTT
GTTGTGAAAC CTGATGCGAA TAAGGCAATT GCAGGGATTA TTACCGAAAG AGGTATCCGA TTGGCGTAAT GAGTTCTGTG
ATAAATTGTC TAATGGATGA TTTAGTTTTC TTTAGAAAAC GATGGCTTAT GTCTGATGCA ATTCTTTACG CTAATGTCTC
GATAAAATTG TTTTGAAATG CAAAGTAGTG AACTTAGATT TTCTATATTA TAGAAACAAA GAAAGAGGAG GGAAAAGCTC
TTCATCTGTT TCTCCCTATC CGTGACATAT GAGATCCTAA AATTCTATTT AGTTTGGGGC AAGATTTTTG GTAAGAATAG
TTCAGTTCTA TATGTTCTGC ATGTTTTATA TGTTAAGCCA TTGAGCATCA TATACATAAT TGCCTAACTG AACAAGAAAA
AATGAGATTG GTATGCTTGA CACACTTGGC ACCCTGTAAA AACTAAAAAG GGTTGTATTG TATTCACTCG ATGGTGCTTT
TGGCTTTCAA GATTCTGTGT ATCATATGCT GTAAGTAGTA AATACCTGCA TGTACTCTGA TGAGAATGCA AAATGATTTA
TATTGGAGAA GTAAAATGTC TAATTGGCTA ACGAGCTAAT AATCCAGGAA AAGCCTTTGC ATAGTATGGT CTTTTTATCA
ATATATTTTT CGACACAGTT AAATAGTCTT AATTATCTAC AGCCTGTTTG TTTATCCCTT GGTCATTTGT GTTAACTATT
TGCTCCTCTC GTCATTCAGA TTACCTGAGA AAGATCATCG TGCAGGGAAG ATCTTCCAAG TCTACCAAGG TTGGAGATAT
TATGACTGAG GAGGTATGTG TATTATGGTA CTTCTTGTGT TTACTTCAAC TTGGAGAAAT ATTTTATTAT TTCTGCTAAC
TTGCAGAAAG AGCTTTTGAG AAATAAACTA CTGTTTTTCC AAAATTAAGC TTGCCAAACA TACTGTTATT CTATAGTGAA
CCTGCAATTT GTGTTATGTT ATGTGTTCAG AGAATTAAAC TGTTCCCCTT GTTAGTGGTG TTCCAGATAA CTAAACTAAA
ATTCTATCGT TGTGACTGCA GAACAAACTT ATCACAGTCA CTCCCAATAC CAGAGTTCTA CAGGCTATGC AACTGATGAC
TGGTATGTAT GAGCTTTGAA ACATTGTTTT AAGCTGTCAA CTAATAAAAA AATCATCTTT AATCATAGTT TGTAATTGGA
TATTATTATA ACAGGACCAA AATTCACACT GTTACTACAT GTATATATTA TTGTTCATTC GGAAAGATAT CATATAGGTT
TATGATTACA TAAGCTTGTA AATCATGTTT GTGATCTTAT TCTGCATTTT GTTACAGATA ACAGAATCAG GCACATTCCT
GTGATTGATG AGAAGGGGAT GATTGGAATG GTGTCTATTG GAGATGTGGT TCGTGCTGTG GTGCGTGAGC ATCGTCAAGA
GGTTGAGCGT TTGAATGCTT TCATACAAGG GGGTTATTAG ATGATGGTGA TGATGATGAT GATGAAAATC CCTGAAGAGC
ATTCAAGCTA ATTTGGATTA AGTAATAAGC CTGAGTGCTT GTAAATATGT TTGTGATTTC AGTTCTATGA ACATTAACCC
CAATGGTGTA GCAGCTTGTT AATAATAACA ACTGGATGCA GTTTGAATCT GTTTTCAACT TTCGAAAACA TGTTTCGCTG
ATGATTGAGT GCAATTTCAA ATCTGCACTC TGCAGATGGT AACTTTTCTT TTTGCCTTAT CATGGATGTC ACAGTTTAAT
ATGTTACTTT TATACGTAAT ATTTTCAAAT AAGTGCTTGA AAATAATTAA GAAAATAAAA 

>Vigan.03G102800.01
GGTATTCTTC TTCTTCCTCT TATTCTTTTT CTTCTTCTTC GTAATCTCAT CTCACCTTTC CATCGTCCTG TGATCCATGT
ACCATTCTTT CAGTTTGAGC TTTTATGTTT GGAAATGAAG GATCTTAACT TGTGGTTGAT ATGTTGTTAT TTTGGGTGAT
CATCAATGTA AAATATAAGG GTCCACGTCT CACCCATCTT AATTTAATTC GAAAGGGATA CTGGTTGGTC AGATTTGAAT
GAAAAAAATA ATAAAGGCTT CTTAGTTTAG TTAAGGTTGT ATTGATGCTG ATGTGGGTAG GGTTGTGGTG TGTTTATTGA
TTTGGTTTCT CGGGGACTGT TTTTGTGAGC TTTTATATAT TTACATCCAA TCTTCATCCC TTGGCGATCT AAGAAAGAAA
TCTGAACAGA AAGGAGAGGT GAGAGTGTGA TTCAACTTTT TTTGTCCGTA TGGGGATTGG ATCTGCAAAT TCTGCATGTT
TCACTGTTTT TTGTTTTTTT CTGTAAATAT TTTGACATAT TTTCAGCTTC TGATAGGTGA TTTTTTTTCT TCTAACATGT
CTCGACTTTC CCGTTTGAGA TTCTTCTATG GATATAGAAG ATAAGTAAAT CAAATGATTC CTCTGATTTG AGCCAACTAT
TTGTTAATTG GACACGAGGG TTATTCTGTT CTCGGAACAC AGATCTTGGA TCTAATTGGA GTAATGATTT CTGTGACTCC
AAAACTAGTT CTATAGAATC TCCCGATTTG CATGTAGTTT GTTCTTGTAC GGTTCTTTTC GGAGTACGAT TTTCATTGGT
TAATTTTGTC AAAATCTGTG CATGGATATA CTTGAGACTA ATTAAACTGC AAAATCGAAA ATTCTAAGAT GTTCTATCTG
GTTGTTAGAC AGCTACAATG CAAGGAGGAT TAAGAACATT TTTGTCCAAC GGGAATGTCA TTAAAAATGC TGTTCTGCAA
CGGGTTCGCA TGGTGAATCC CCTGTTGCAA CCAATCGCCT CCTCACGGTT TGAATCTGTT ACACCTGCTC GCATTGAGGA
ACATGGTTTT GAGAGCACAA CAATTGCGGA CATCATGAAA GACAAAGGCA AGGGTGCAGA TGGATCCTGG CTCTGGTGCA
CCACAGATGA TACTGTTTAT GATGCTGTTA AATCGATGAC CCAAAACAAT GTTGGGGCTC TGGTTGTTGT GAAACCTGAT
GCGAATAAGG CAATTGCAGG GATTATTACC GAAAGAGATT ACCTGAGAAA GATCATCGTG CAGGGAAGAT CTTCCAAGTC
TACCAAGGTT GGAGATATTA TGACTGAGGA GAACAAACTT ATCACAGTCA CTCCCAATAC CAGAGTTCTA CAGGCTATGC
AACTGATGAC TGATAACAGA ATCAGGCACA TTCCTGTGAT TGATGAGAAG GGGATGATTG GAATGGTGTC TATTGGAGAT
GTGGTTCGTG CTGTGGTGCG TGAGCATCGT CAAGAGGTTG AGCGTTTGAA TGCTTTCATA CAAGGGGGTT ATTAGATGAT
GGTGATGATG ATGATGATGA AAATCCCTGA AGAGCATTCA AGCTAATTTG GATTAAGTAA TAAGCCTGAG TGCTTGTAAA
TATGTTTGTG ATTTCAGTTC TATGAACATT AACCCCAATG GTGTAGCAGC TTGTTAATAA TAACAACTGG ATGCAGTTTG
AATCTGTTTT CAACTTTCGA AAACATGTTT CGCTGATGAT TGAGTGCAAT TTCAAATCTG CACTCTGCAG ATGGTAACTT
TTCTTTTTGC CTTATCATGG ATGTCACAGT TTAATATGTT ACTTTTATAC GTAATATTTT CAAATAAGTG CTTGAAAATA
ATTAAGAAAA TAAAA

>Vigan.03G102800.01
ATGCAAGGAG GATTAAGAAC ATTTTTGTCC AACGGGAATG TCATTAAAAA TGCTGTTCTG CAACGGGTTC GCATGGTGAA
TCCCCTGTTG CAACCAATCG CCTCCTCACG GTTTGAATCT GTTACACCTG CTCGCATTGA GGAACATGGT TTTGAGAGCA
CAACAATTGC GGACATCATG AAAGACAAAG GCAAGGGTGC AGATGGATCC TGGCTCTGGT GCACCACAGA TGATACTGTT
TATGATGCTG TTAAATCGAT GACCCAAAAC AATGTTGGGG CTCTGGTTGT TGTGAAACCT GATGCGAATA AGGCAATTGC
AGGGATTATT ACCGAAAGAG ATTACCTGAG AAAGATCATC GTGCAGGGAA GATCTTCCAA GTCTACCAAG GTTGGAGATA
TTATGACTGA GGAGAACAAA CTTATCACAG TCACTCCCAA TACCAGAGTT CTACAGGCTA TGCAACTGAT GACTGATAAC
AGAATCAGGC ACATTCCTGT GATTGATGAG AAGGGGATGA TTGGAATGGT GTCTATTGGA GATGTGGTTC GTGCTGTGGT
GCGTGAGCAT CGTCAAGAGG TTGAGCGTTT GAATGCTTTC ATACAAGGGG GTTATTAG

>Vigan.03G102800.01
MQGGLRTFLS NGNVIKNAVL QRVRMVNPLL QPIASSRFES VTPARIEEHG FESTTIADIM KDKGKGADGS WLWCTTDDTV
YDAVKSMTQN NVGALVVVKP DANKAIAGII TERDYLRKII VQGRSSKSTK VGDIMTEENK LITVTPNTRV LQAMQLMTDN
RIRHIPVIDE KGMIGMVSIG DVVRAVVREH RQEVERLNAF IQGGY*