GBrowse Details

Vigan.03G066400.01

Basic Information:
Name: Vigan.03G066400.01
Multiple alignment
Variant Information
Position: Chr03:6440215..6444111 (+ strand)
Length: 3897
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIH4, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Thioredoxin (IPR005746)
Disulphide isomerase (IPR005788)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.93,48.98,46.54,28.90,89.00,186.57,38.26,73.43
Arabidopsis thaliana homolog: AT1G04980.1, AT2G32920.1
Automatic updates:
Name: NM_001249647 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disulfide isomerse like protein (PDIM-1), mRNA.
PubMed ID: 18167147 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6440215..6440495 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr03:6440496..6440633 (+ strand)
Length: 138
Type: CDS
Position: Chr03:6440837..6440995 (+ strand)
Length: 159
Type: CDS
Position: Chr03:6441637..6441750 (+ strand)
Length: 114
Type: CDS
Position: Chr03:6442185..6442342 (+ strand)
Length: 158
Type: CDS
Position: Chr03:6442439..6442538 (+ strand)
Length: 100
Type: CDS
Position: Chr03:6442744..6442920 (+ strand)
Length: 177
Type: CDS
Position: Chr03:6443126..6443271 (+ strand)
Length: 146
Type: CDS
Position: Chr03:6443448..6443594 (+ strand)
Length: 147
Type: CDS
Position: Chr03:6443685..6443859 (+ strand)
Length: 175
Type: CDS
Position: Chr03:6443860..6444111 (+ strand)
Length: 252
Type: three_prime_UTR

>Vigan.03G066400.01 class=Sequence position=Chr03:6440215..6444111 (+ strand)
GTTTTATTTT ATATTATAAT TATATACCAA TCTTCTGTCT AAAAGTAATT TACTTTTATC ATAAAAAAGA GAATATTTCT
GAACATTAAT CAAATTCGTT ATTTGGACTT TGAAACGAAG AAATAAAATT GATTTGCCAA CACGAGTGTC TGACGTGTAA
GTATATAATT GGCGGACACA CGTAGCAATA GAAAGTACTC GAACAGACAA AACAAACTAA GAAGGGTTCT TTCTTCCTTG
CGTAGATTCA GAGTGCAAAG AGTGAGAGAA AGACAGTACC AATGTCTCAA TTTCGAACAC CATTTTTCGT TTCATTTCCT
CTTTTGCTAA TCATCTTCAA CCTTGCCCCT TCTTCCTACG CACTCTATGG AGCATCCTCG CCCGTGCTTC AACTCACACC
CTCCAACTTC AAGTCCAAGG TGAATCATGT TTAAATCTCG AACTCTTTCC CAGTGCCCCA TTTCGTGATC TCACCGTATT
TGCCATTTTC CCAAATTGGT ATTTTGTAGA AACGTTAAAT TTTGTATCTT TGTTCTTGAA ATCTATCTGG GCATGTACAT
GGATAATTGT GGCGTTGCGA TGTGGTTGTA GTTTTGATGG CTGAAATCAA GGTTCATGGC AGGTTCTGAA TTCAAATGGA
GTTGTTCTCG TTGAATTCTT TGCTCCATGG TGTGGACACT GTCAGGCTCT GACTCCGATA TGGGAGAAGG CAGCTACTGT
GTTGAAGGGT GTGGTTACTG TGGCAGCACT TGATGCTGAT GCTCACTCGT CTCTGGCTCA GGTTGTGTAT TGTTCATTTG
TTTATTAATG ATGCTATTTT TAGATGTAAT GAAATATTGA AATCTGTTAA ATGAAGACTA TGATGCATTT GTTCTTTGGT
TCTTGCAATC AGCCTTTCTG AAATATGAAG GTGCTGTATT ATATGCTTGA CTTTTATGTT AATGTACACT GGAATTGCCT
TTATGTGGAT CAGGCAGGAT GCGAAACAAT GGGTTGTTAT GCATACTTAT TTGAGCTCTT GGAACTGTCT GTTTTGAACA
ATTGAATGTT ATTAATTGAA TTGGACCTAA TCATTTGGAC CATTTTAGAT TACTTGTTTG TTTTGTGGAA TATCAACATT
CAAGAACTAT TGTATATGTA AAGTTTTTCC TTGCTGTTGG ATCTAGCACC AAACTCTTTT TTTTTGTGCA AAGCAACCAA
AGAATATAGT ACCTGTACAA GATAGAATAT CTCCTTTTTT GATTCTTTCT TTGCCTCTTG CTTCATAACA TCAGCTATCT
ACGCATGAGA TTTTTACTCG TAGATTTTGA ATTATGGTTT ACACGTTTGC CTGTTTCTTA GTTTGTTGTT ATAACTTTAT
GTTGGAACTT TATTTACATT TGCGCACGTG TGTGTGCATG GTTTTTTCTT GATTCCCCAC AGGAATATGG AATCAGAGGA
TTTCCAACTA TAAAAGTGTT TGCTCCAGGA AAGCCACCGG TTGATTACCA AGGAGCCAGA GATGTCAAAC CAATTGCTGA
ATTTGCACTT CAACAGGTTC GTTGGAATTT GCATCGGTTA TTTTCACCCC CCCCCAAAGG AACCAGTTAA AAGTTGAGCA
AAGTTAACTA AAATTACGTG TACACACCAC TTTTCTAGTG TAAAAAACCT AAGCAGAGAA AGGTTTGAAT GTATTATTAG
GTGAGCGTTA TGTGACTACT TGTAAGTACA GGTCTATAAA AAAACAACTC ATTCATTTTT GTTTTAATTC ATGATTTGCA
TGATTTATTG ACTGATGTTT GATAAATAAA CAAAGTCATA CTTCGCAGAC TATCACAAGC AAACTCACTA ATTAATTTTT
GTACTAGTTA CTTAATGCTA AATAATTTTG TCGTGTCCAA ATATGCAGTA TTTATTTTAG AAAAAGAAAT CAGTAAATAG
TATACCTTTA CTCTGAAGTA TTGCCTCCTT ATTTTATATC TCATGTACAG GTAAAGGCTC TTTTGAAGGA GCGGTTAAGT
GGAAAAGCAA CAGGGGGTTC AAATGAAAAG ACAGAAACCA GTTCTTCAGT AGAATTGAAC TCTGGAAACT TTGATGAATT
GGTCCTCAAG AGCAAAGAAC TCTGGATTGT GGAATTTTTT GCACCTTGGT AACTGCTGTT TGTGTTCTGA AATCTAAAGT
ATTCCCATGT TGACATTTCA GACGTGTAGC TCTAATAACA TTTATCCTCT TTTATTTCCC AAAGGTGTGG ACATTGTAAA
AAGTTGGCTC CTGAGTGGAA GAAAGCATCC AATAATTTGA AAGGAAAGGT TAAACTGGGC CATGTTGACT GTGATGCCGA
AAAGGTACTG TTATACTTTT AAATAGATTG TAAGAACTTG TCAAAACTAC TGTGCCTGTG ATCAAGATGG TCATTGCATA
GTTTTTTTAT TTATTTTTTA TTTTTTTATG TATTCTTGTT AAGGGTAAGA CTCCAATCGC TGTCTTATTT TATAATGTTT
TATTACGCAC TTTAGTTTAT ATAGTTCTGA CAGGAAATTT TTTTACCAGT CACTAATGAG CAGGTTCAAA GTCCAAGGAT
TCCCAACAAT CTTGGTATTT GGTGCTGATA AAGATAGTCC TATTCCTTAT GAAGGTGCAA GAACCGCCGC AGCTATTGAA
TCATTTGCAT TAGAGCAGCT GGAAACAAAT GTTGCTCCTC CAGAAGTGAC AGAGATACAC AGTCCAGTAA GCATTTTCTC
TCCTGCCTAA TTAGTGTGCA TTGGTTTGAA AAAGAGGATA ATAAGATAAT CGATCTTGCT AAGGAAGAGT GCCCTAAGGG
CACTGATTGT GGAACATTTA ATTTAATGTG TGTGTGTGTA TTCTGTTAAA TGATTTCAAT TATTCACAAA AGCATGTGTT
AAATGATAAT TAACATGAAC CTTCTCTGTA GGATGTTTTG GAAGAGAAAT GTGGTACTGC CGCAATCTGT TTTGTTGCCT
TCCTTCCTGA CATTTTGGAT TCCAAGGCTG AGGGAAGGAA CAGATATCTT CAGCAATTAT TATCAGTTGC AGAAAAGTTT
AAAAGAAGTC CATACAGGCA AGTTAAAAAA ACATTTTGCT TTGCTTCCAT CCTAAAATAT CACTTTACGC GTTAATCTCT
TCATTGTAAA ATTGTTTGAT TCTGTCTGTT GCAAATGCTT TATTTATGTG TATTTTTAAT AAATCTTTGT TGGCGAATTC
TTTTTAATTG AATTTTTGTG TCTTTGAGCA CAGCTATGTC TGGGTAGCTG CAGGGAAGCA GCTGGATCTT GAGAAGCAAG
TGGGTGTTGG TGGATATGGT TATCCAGCTT TAGTAGCCCT TAACCTTAAG AAAGCTGTTT ATGCTCCTCT CAAGAGTGCT
TTTGAACTTG ACCAAATTAT GTAAGTTTAT TCCTTCTAAC TTTATGCTAA ATACTAAACA AACTATTGAG ATGAACAAGC
TCTTGAACAT TAGTTATCTA TTTTCTGCAG ACAATTTGTG AAAGATGCTG GACGTGGAGG CAAAGGGAAT TTGCCCCTGC
AAAGCACTCC GACCATTGTA AAGACAGAAC CATGGGATGG AAAAGATGGA GAAATAATTG AGGAGGATGA ATTTTCACTT
GAAGAATTAA TGGGGGAAGA TGCTTCAAAC AAGGACGAGC TATGATCAAT TGAGAAGGAA ATTATGGCAA ATTAAAATTT
TCAACCACTG AATTTTACGT TACAGGCAAT ATGTTTCTCA TGATGATTGT GATCACTGTT CTGTTTTACC ATGTTACAAG
TTAAAGACCA GTCTAGTGAT GTGTGATCTT ATGAGGATTT TGAAATGTTC AGTGGTACTG ATATTTATCC AGGGAAAATG
TCATCGATGT TTTTATTTTA CCTATCAATA AGCATTGAGC TAACAGGTAC AACGTTT

>Vigan.03G066400.01
GTTTTATTTT ATATTATAAT TATATACCAA TCTTCTGTCT AAAAGTAATT TACTTTTATC ATAAAAAAGA GAATATTTCT
GAACATTAAT CAAATTCGTT ATTTGGACTT TGAAACGAAG AAATAAAATT GATTTGCCAA CACGAGTGTC TGACGTGTAA
GTATATAATT GGCGGACACA CGTAGCAATA GAAAGTACTC GAACAGACAA AACAAACTAA GAAGGGTTCT TTCTTCCTTG
CGTAGATTCA GAGTGCAAAG AGTGAGAGAA AGACAGTACC AATGTCTCAA TTTCGAACAC CATTTTTCGT TTCATTTCCT
CTTTTGCTAA TCATCTTCAA CCTTGCCCCT TCTTCCTACG CACTCTATGG AGCATCCTCG CCCGTGCTTC AACTCACACC
CTCCAACTTC AAGTCCAAGG TTCTGAATTC AAATGGAGTT GTTCTCGTTG AATTCTTTGC TCCATGGTGT GGACACTGTC
AGGCTCTGAC TCCGATATGG GAGAAGGCAG CTACTGTGTT GAAGGGTGTG GTTACTGTGG CAGCACTTGA TGCTGATGCT
CACTCGTCTC TGGCTCAGGA ATATGGAATC AGAGGATTTC CAACTATAAA AGTGTTTGCT CCAGGAAAGC CACCGGTTGA
TTACCAAGGA GCCAGAGATG TCAAACCAAT TGCTGAATTT GCACTTCAAC AGGTAAAGGC TCTTTTGAAG GAGCGGTTAA
GTGGAAAAGC AACAGGGGGT TCAAATGAAA AGACAGAAAC CAGTTCTTCA GTAGAATTGA ACTCTGGAAA CTTTGATGAA
TTGGTCCTCA AGAGCAAAGA ACTCTGGATT GTGGAATTTT TTGCACCTTG GTGTGGACAT TGTAAAAAGT TGGCTCCTGA
GTGGAAGAAA GCATCCAATA ATTTGAAAGG AAAGGTTAAA CTGGGCCATG TTGACTGTGA TGCCGAAAAG TCACTAATGA
GCAGGTTCAA AGTCCAAGGA TTCCCAACAA TCTTGGTATT TGGTGCTGAT AAAGATAGTC CTATTCCTTA TGAAGGTGCA
AGAACCGCCG CAGCTATTGA ATCATTTGCA TTAGAGCAGC TGGAAACAAA TGTTGCTCCT CCAGAAGTGA CAGAGATACA
CAGTCCAGAT GTTTTGGAAG AGAAATGTGG TACTGCCGCA ATCTGTTTTG TTGCCTTCCT TCCTGACATT TTGGATTCCA
AGGCTGAGGG AAGGAACAGA TATCTTCAGC AATTATTATC AGTTGCAGAA AAGTTTAAAA GAAGTCCATA CAGCTATGTC
TGGGTAGCTG CAGGGAAGCA GCTGGATCTT GAGAAGCAAG TGGGTGTTGG TGGATATGGT TATCCAGCTT TAGTAGCCCT
TAACCTTAAG AAAGCTGTTT ATGCTCCTCT CAAGAGTGCT TTTGAACTTG ACCAAATTAT ACAATTTGTG AAAGATGCTG
GACGTGGAGG CAAAGGGAAT TTGCCCCTGC AAAGCACTCC GACCATTGTA AAGACAGAAC CATGGGATGG AAAAGATGGA
GAAATAATTG AGGAGGATGA ATTTTCACTT GAAGAATTAA TGGGGGAAGA TGCTTCAAAC AAGGACGAGC TATGATCAAT
TGAGAAGGAA ATTATGGCAA ATTAAAATTT TCAACCACTG AATTTTACGT TACAGGCAAT ATGTTTCTCA TGATGATTGT
GATCACTGTT CTGTTTTACC ATGTTACAAG TTAAAGACCA GTCTAGTGAT GTGTGATCTT ATGAGGATTT TGAAATGTTC
AGTGGTACTG ATATTTATCC AGGGAAAATG TCATCGATGT TTTTATTTTA CCTATCAATA AGCATTGAGC TAACAGGTAC
AACGTTT

>Vigan.03G066400.01
ATGTCTCAAT TTCGAACACC ATTTTTCGTT TCATTTCCTC TTTTGCTAAT CATCTTCAAC CTTGCCCCTT CTTCCTACGC
ACTCTATGGA GCATCCTCGC CCGTGCTTCA ACTCACACCC TCCAACTTCA AGTCCAAGGT TCTGAATTCA AATGGAGTTG
TTCTCGTTGA ATTCTTTGCT CCATGGTGTG GACACTGTCA GGCTCTGACT CCGATATGGG AGAAGGCAGC TACTGTGTTG
AAGGGTGTGG TTACTGTGGC AGCACTTGAT GCTGATGCTC ACTCGTCTCT GGCTCAGGAA TATGGAATCA GAGGATTTCC
AACTATAAAA GTGTTTGCTC CAGGAAAGCC ACCGGTTGAT TACCAAGGAG CCAGAGATGT CAAACCAATT GCTGAATTTG
CACTTCAACA GGTAAAGGCT CTTTTGAAGG AGCGGTTAAG TGGAAAAGCA ACAGGGGGTT CAAATGAAAA GACAGAAACC
AGTTCTTCAG TAGAATTGAA CTCTGGAAAC TTTGATGAAT TGGTCCTCAA GAGCAAAGAA CTCTGGATTG TGGAATTTTT
TGCACCTTGG TGTGGACATT GTAAAAAGTT GGCTCCTGAG TGGAAGAAAG CATCCAATAA TTTGAAAGGA AAGGTTAAAC
TGGGCCATGT TGACTGTGAT GCCGAAAAGT CACTAATGAG CAGGTTCAAA GTCCAAGGAT TCCCAACAAT CTTGGTATTT
GGTGCTGATA AAGATAGTCC TATTCCTTAT GAAGGTGCAA GAACCGCCGC AGCTATTGAA TCATTTGCAT TAGAGCAGCT
GGAAACAAAT GTTGCTCCTC CAGAAGTGAC AGAGATACAC AGTCCAGATG TTTTGGAAGA GAAATGTGGT ACTGCCGCAA
TCTGTTTTGT TGCCTTCCTT CCTGACATTT TGGATTCCAA GGCTGAGGGA AGGAACAGAT ATCTTCAGCA ATTATTATCA
GTTGCAGAAA AGTTTAAAAG AAGTCCATAC AGCTATGTCT GGGTAGCTGC AGGGAAGCAG CTGGATCTTG AGAAGCAAGT
GGGTGTTGGT GGATATGGTT ATCCAGCTTT AGTAGCCCTT AACCTTAAGA AAGCTGTTTA TGCTCCTCTC AAGAGTGCTT
TTGAACTTGA CCAAATTATA CAATTTGTGA AAGATGCTGG ACGTGGAGGC AAAGGGAATT TGCCCCTGCA AAGCACTCCG
ACCATTGTAA AGACAGAACC ATGGGATGGA AAAGATGGAG AAATAATTGA GGAGGATGAA TTTTCACTTG AAGAATTAAT
GGGGGAAGAT GCTTCAAACA AGGACGAGCT ATGA

>Vigan.03G066400.01
MSQFRTPFFV SFPLLLIIFN LAPSSYALYG ASSPVLQLTP SNFKSKVLNS NGVVLVEFFA PWCGHCQALT PIWEKAATVL
KGVVTVAALD ADAHSSLAQE YGIRGFPTIK VFAPGKPPVD YQGARDVKPI AEFALQQVKA LLKERLSGKA TGGSNEKTET
SSSVELNSGN FDELVLKSKE LWIVEFFAPW CGHCKKLAPE WKKASNNLKG KVKLGHVDCD AEKSLMSRFK VQGFPTILVF
GADKDSPIPY EGARTAAAIE SFALEQLETN VAPPEVTEIH SPDVLEEKCG TAAICFVAFL PDILDSKAEG RNRYLQQLLS
VAEKFKRSPY SYVWVAAGKQ LDLEKQVGVG GYGYPALVAL NLKKAVYAPL KSAFELDQII QFVKDAGRGG KGNLPLQSTP
TIVKTEPWDG KDGEIIEEDE FSLEELMGED ASNKDEL*