Variant information

Chr03:6440215 - 6444111

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6440365TC652479.771.00DOWNSTREAM(|4887||None|Vigan.03G066500.01), DOWNSTREAM(|879||None|Vigan.03G066300.01), UPSTREAM(|2882||None|Vigan.03G066200.01), UTR_5_PRIME(|131||None|Vigan.03G066400.01)Vigna nepalensis
6441782CA561804.771.00DOWNSTREAM(|2296||None|Vigan.03G066300.01), DOWNSTREAM(|3470||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|4299||None|Vigan.03G066200.01)Vigna nepalensis
6441991GC481956.771.00DOWNSTREAM(|2505||None|Vigan.03G066300.01), DOWNSTREAM(|3261||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|4508||None|Vigan.03G066200.01)Vigna nepalensis
6442050TC502070.771.00DOWNSTREAM(|2564||None|Vigan.03G066300.01), DOWNSTREAM(|3202||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|4567||None|Vigan.03G066200.01)Vigna nepalensis
6442067TC461954.771.00DOWNSTREAM(|2581||None|Vigan.03G066300.01), DOWNSTREAM(|3185||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|4584||None|Vigan.03G066200.01)Vigna nepalensis
6442091CT532055.771.00DOWNSTREAM(|2605||None|Vigan.03G066300.01), DOWNSTREAM(|3161||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|4608||None|Vigan.03G066200.01)Vigna nepalensis
6442585TC582388.771.00DOWNSTREAM(|2667||None|Vigan.03G066500.01), DOWNSTREAM(|3099||None|Vigan.03G066300.01), INTRON(|||None|Vigan.03G066400.01)Vigna nepalensis
6442845AC371474.771.00DOWNSTREAM(|2407||None|Vigan.03G066500.01), DOWNSTREAM(|3359||None|Vigan.03G066300.01), SYNONYMOUS_CODING(SILENT|gcA/gcC|A257|None|Vigan.03G066400.01)Vigna nepalensis
6442981TC552232.771.00DOWNSTREAM(|2271||None|Vigan.03G066500.01), DOWNSTREAM(|3495||None|Vigan.03G066300.01), INTRON(|||None|Vigan.03G066400.01)Vigna nepalensis
6443029CT582286.771.00DOWNSTREAM(|2223||None|Vigan.03G066500.01), DOWNSTREAM(|3543||None|Vigan.03G066300.01), INTRON(|||None|Vigan.03G066400.01)Vigna nepalensis
6443775AG542088.771.00DOWNSTREAM(|1477||None|Vigan.03G066500.01), DOWNSTREAM(|4289||None|Vigan.03G066300.01), SYNONYMOUS_CODING(SILENT|ggA/ggG|G410|None|Vigan.03G066400.01)Vigna nepalensis
6443843AG612343.771.00DOWNSTREAM(|1409||None|Vigan.03G066500.01), DOWNSTREAM(|4357||None|Vigan.03G066300.01), NON_SYNONYMOUS_CODING(MISSENSE|aAc/aGc|N433S|None|Vigan.03G066400.01)Vigna nepalensis
6443906AT592296.771.00DOWNSTREAM(|1346||None|Vigan.03G066500.01), DOWNSTREAM(|4420||None|Vigan.03G066300.01), UTR_3_PRIME(|47||None|Vigan.03G066400.01)Vigna nepalensis
6444058TG592277.771.00DOWNSTREAM(|1194||None|Vigan.03G066500.01), DOWNSTREAM(|4572||None|Vigan.03G066300.01), UTR_3_PRIME(|199||None|Vigan.03G066400.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
6441448CTTTTC492157.731.00DOWNSTREAM(|1963||None|Vigan.03G066300.01), DOWNSTREAM(|3803||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|3966||None|Vigan.03G066200.01)Vigna nepalensis
6441454TTGGA492202.731.00DOWNSTREAM(|1969||None|Vigan.03G066300.01), DOWNSTREAM(|3797||None|Vigan.03G066500.01), INTRON(|||None|Vigan.03G066400.01), UPSTREAM(|3972||None|Vigan.03G066200.01)Vigna nepalensis
6443360CCAG582642.731.00DOWNSTREAM(|1891||None|Vigan.03G066500.01), DOWNSTREAM(|3875||None|Vigan.03G066300.01), INTRON(|||None|Vigan.03G066400.01)Vigna nepalensis
6443829GGAAG592585.731.00CODON_DELETION(|gaa/|E429|None|Vigan.03G066400.01), DOWNSTREAM(|1422||None|Vigan.03G066500.01), DOWNSTREAM(|4344||None|Vigan.03G066300.01)Vigna nepalensis