GBrowse Details

Vigan.03G010100.01

Basic Information:
Name: Vigan.03G010100.01
Multiple alignment
Variant Information
Position: Chr03:721169..723201 (+ strand)
Length: 2033
Functional Information:
Description: Similar to Auxin-induced in root cultures protein. [G7K4W5, Medicago truncatula]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Cytochrome b561, eukaryote (IPR004877)
DOMON domain (IPR005018)
Cytochrome b561/ferric reductase transmembrane (IPR006593)
Uncharacterised conserved protein UCP037471 (IPR017214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.09,2.60,1.68,0.35,2.50,4.95,13.45
Arabidopsis thaliana homolog: AT2G04850.1
Automatic updates:
Name: NM_001317407 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome b561 and DOMON domain-containing protein At2g04850-like (LOC100775680), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317554 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome b561 and DOMON domain-containing protein At2g04850-like (LOC100799859), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:721169..721488 (+ strand)
Length: 320
Type: five_prime_UTR
Position: Chr03:721489..722236 (+ strand)
Length: 748
Type: CDS
Position: Chr03:722646..723100 (+ strand)
Length: 455
Type: CDS
Position: Chr03:723101..723201 (+ strand)
Length: 101
Type: three_prime_UTR

>Vigan.03G010100.01 class=Sequence position=Chr03:721169..723201 (+ strand)
CTCGTGAACA ACTACAATCA AAAGGAGTAG CCGCACTAGA TCGACATCAT AATATTACAA AATTTTAAAC CAATCACAGT
GTCCCATTTC CACCAAACGC ATATGCACAA CATTGTCTTC CCTTCAAAGT CAAGCACCAA CAACATAAAA GAAAGTAAGC
ACTAACGTTT TCACTTATTA CGTGTTCAAA ATCCATAATA GCAACCTTAA CACAGCATTA CAAAACACAG CATTGTTAAC
AAAAGAACTG AACCATGAAC CATTAATTCT CTCCCTATCC ATCACTTACT CTCTCCAATT CTCCCTCCAT CAACGCCACC
ATGCTTTTTC TTTTCCTCTT CCTTCTATGT TCCCTTCCCC ACATCGCATT CTCATCCCAC TGCACGGTCG AAACAGCGAC
CAAAACGTTC CAAAAATGCA TGAACCTCCC AACCCAACAA GCCTCCATAG CATGGACATT CCACCCTCAC AACACAACCT
TGGAACTTGT CTTCTTTGGA AGCTTCATTT CACCTTCTGG GTGGGTTGGA TGGGGCATAA ACCCCACATC GCCGGAAATG
ACAGGAACAC GTGCATTAAT AGCCTTCCCT GACCCAAACT CGGGCCAAAT AGTTCTTCTA CCTTACATCT TAGACCCCAC
AGTCAAGCTT CAAAAATCTC CACTTCTCTC TCGCCCTCTT GACATCCACC TCCTCTCCTC CACCGCCTCC ATGTACGGCG
GAAAACTGGC CACCGTGCAC AACGGCGCCA CCATCCAAAT CTACGGCACC ATGAAACTGC AAACGAACAA AACGAAGATC
CACCTTGTTT GGAACAGGGG ACTTTACGTG CAGGGCTACT CCCCCACCAT TCATCCAACC ACCTCCACCG ACCTGTCTTC
CATTGCCACC TTTGACGTGT TGTCGGGATC CTCTGCTCCT CAGCACACGG ATCTCACTAT GCTGAGAGTG ATCCATGGCA
CCCTCAACGC CATCTCCTGG GGCCTTCTCT TACCCATCGG AGCCATCACC GCACGCTACC TTCGCCACAT TCAAGCACTC
GGACCCGCAT GGTTCTATGC TCATGCAGGT CACTATCATT GTTCTATTTC AATTTCACCA TTCGTATTTT AAATTTCAGC
GCTCTCTTCT TTAAATAACA TCACAACAAG GTTTGGAGAA CAAAGATTCT CGTACAGCTC GAGATAAATA AAGAAAAGAA
AATACAAACA ACTCACGAGT GCTAATAAGA TGCTTAAAGT AAAATAAAAG CTCAAATAAG ACTACCCTTT TATTCAAAAA
TAATTTCTGT CTGTAAATAG AAGCGAAAGA CTGCATTTTT TTCAGTTGCA ATTCTGAATT TTGTACACTC CAACCTTGAC
TTCAACACCC ATTTGCATTT CATGTTTTTT TTTTGTCATG AAATATATGA TTTGTCACAG AAACTCGCTT GATGGAGAAA
TGCATGTATA ACGAGAATAA TATGAATGAT GATGCAGGAG TTCAACTGTT TGGTTTCGTT CTGGGGACGG TGGGGTTTGG
CATCGGAATT CGGCTGGGGC AACTGTCGCC GGGAGTGGAG TACAGGCTTC ACCGGAAGCT TGGAATCGGA GTGTTCTGCT
TAGGGGCGTT GCAGACTCTG GCACTGTTGT TTAGGCCAAA CACAAGGAAC AAGTTCAGAA AGTACTGGAA ATCGTACCAC
CACTTTGTAG GGTACTCGTG TGTGGTGCTT GGGTTTGTGA ATGTCTTTCA AGGATTTGAG GTGATGGGTG CAAGCAGGTC
CTACGCCAAG TTGACCTATT GCCTAGGACT CTCTACTCTC ATTGGCCTTT GCATTGCTTT GGAGGTCAAT TCTTGGGTCG
TTTTCTGCAG AAAATCCAAG GAAGATAAGA TGAGGAGAGA AGGGTTCATT GCAACTTCTC ACAAAGGAAC TTCATCTGCC
ATTCACAATT AACGTTACTA TTTCATTTCA ACTTTTTACT CAATTTTTTC TATCCAAATC CAATGATTTT GATTCATACA
TACGTACACA CCATTGCCAT TTTCTGTTTG ATT

>Vigan.03G010100.01
CTCGTGAACA ACTACAATCA AAAGGAGTAG CCGCACTAGA TCGACATCAT AATATTACAA AATTTTAAAC CAATCACAGT
GTCCCATTTC CACCAAACGC ATATGCACAA CATTGTCTTC CCTTCAAAGT CAAGCACCAA CAACATAAAA GAAAGTAAGC
ACTAACGTTT TCACTTATTA CGTGTTCAAA ATCCATAATA GCAACCTTAA CACAGCATTA CAAAACACAG CATTGTTAAC
AAAAGAACTG AACCATGAAC CATTAATTCT CTCCCTATCC ATCACTTACT CTCTCCAATT CTCCCTCCAT CAACGCCACC
ATGCTTTTTC TTTTCCTCTT CCTTCTATGT TCCCTTCCCC ACATCGCATT CTCATCCCAC TGCACGGTCG AAACAGCGAC
CAAAACGTTC CAAAAATGCA TGAACCTCCC AACCCAACAA GCCTCCATAG CATGGACATT CCACCCTCAC AACACAACCT
TGGAACTTGT CTTCTTTGGA AGCTTCATTT CACCTTCTGG GTGGGTTGGA TGGGGCATAA ACCCCACATC GCCGGAAATG
ACAGGAACAC GTGCATTAAT AGCCTTCCCT GACCCAAACT CGGGCCAAAT AGTTCTTCTA CCTTACATCT TAGACCCCAC
AGTCAAGCTT CAAAAATCTC CACTTCTCTC TCGCCCTCTT GACATCCACC TCCTCTCCTC CACCGCCTCC ATGTACGGCG
GAAAACTGGC CACCGTGCAC AACGGCGCCA CCATCCAAAT CTACGGCACC ATGAAACTGC AAACGAACAA AACGAAGATC
CACCTTGTTT GGAACAGGGG ACTTTACGTG CAGGGCTACT CCCCCACCAT TCATCCAACC ACCTCCACCG ACCTGTCTTC
CATTGCCACC TTTGACGTGT TGTCGGGATC CTCTGCTCCT CAGCACACGG ATCTCACTAT GCTGAGAGTG ATCCATGGCA
CCCTCAACGC CATCTCCTGG GGCCTTCTCT TACCCATCGG AGCCATCACC GCACGCTACC TTCGCCACAT TCAAGCACTC
GGACCCGCAT GGTTCTATGC TCATGCAGGA GTTCAACTGT TTGGTTTCGT TCTGGGGACG GTGGGGTTTG GCATCGGAAT
TCGGCTGGGG CAACTGTCGC CGGGAGTGGA GTACAGGCTT CACCGGAAGC TTGGAATCGG AGTGTTCTGC TTAGGGGCGT
TGCAGACTCT GGCACTGTTG TTTAGGCCAA ACACAAGGAA CAAGTTCAGA AAGTACTGGA AATCGTACCA CCACTTTGTA
GGGTACTCGT GTGTGGTGCT TGGGTTTGTG AATGTCTTTC AAGGATTTGA GGTGATGGGT GCAAGCAGGT CCTACGCCAA
GTTGACCTAT TGCCTAGGAC TCTCTACTCT CATTGGCCTT TGCATTGCTT TGGAGGTCAA TTCTTGGGTC GTTTTCTGCA
GAAAATCCAA GGAAGATAAG ATGAGGAGAG AAGGGTTCAT TGCAACTTCT CACAAAGGAA CTTCATCTGC CATTCACAAT
TAACGTTACT ATTTCATTTC AACTTTTTAC TCAATTTTTT CTATCCAAAT CCAATGATTT TGATTCATAC ATACGTACAC
ACCATTGCCA TTTTCTGTTT GATT

>Vigan.03G010100.01
ATGCTTTTTC TTTTCCTCTT CCTTCTATGT TCCCTTCCCC ACATCGCATT CTCATCCCAC TGCACGGTCG AAACAGCGAC
CAAAACGTTC CAAAAATGCA TGAACCTCCC AACCCAACAA GCCTCCATAG CATGGACATT CCACCCTCAC AACACAACCT
TGGAACTTGT CTTCTTTGGA AGCTTCATTT CACCTTCTGG GTGGGTTGGA TGGGGCATAA ACCCCACATC GCCGGAAATG
ACAGGAACAC GTGCATTAAT AGCCTTCCCT GACCCAAACT CGGGCCAAAT AGTTCTTCTA CCTTACATCT TAGACCCCAC
AGTCAAGCTT CAAAAATCTC CACTTCTCTC TCGCCCTCTT GACATCCACC TCCTCTCCTC CACCGCCTCC ATGTACGGCG
GAAAACTGGC CACCGTGCAC AACGGCGCCA CCATCCAAAT CTACGGCACC ATGAAACTGC AAACGAACAA AACGAAGATC
CACCTTGTTT GGAACAGGGG ACTTTACGTG CAGGGCTACT CCCCCACCAT TCATCCAACC ACCTCCACCG ACCTGTCTTC
CATTGCCACC TTTGACGTGT TGTCGGGATC CTCTGCTCCT CAGCACACGG ATCTCACTAT GCTGAGAGTG ATCCATGGCA
CCCTCAACGC CATCTCCTGG GGCCTTCTCT TACCCATCGG AGCCATCACC GCACGCTACC TTCGCCACAT TCAAGCACTC
GGACCCGCAT GGTTCTATGC TCATGCAGGA GTTCAACTGT TTGGTTTCGT TCTGGGGACG GTGGGGTTTG GCATCGGAAT
TCGGCTGGGG CAACTGTCGC CGGGAGTGGA GTACAGGCTT CACCGGAAGC TTGGAATCGG AGTGTTCTGC TTAGGGGCGT
TGCAGACTCT GGCACTGTTG TTTAGGCCAA ACACAAGGAA CAAGTTCAGA AAGTACTGGA AATCGTACCA CCACTTTGTA
GGGTACTCGT GTGTGGTGCT TGGGTTTGTG AATGTCTTTC AAGGATTTGA GGTGATGGGT GCAAGCAGGT CCTACGCCAA
GTTGACCTAT TGCCTAGGAC TCTCTACTCT CATTGGCCTT TGCATTGCTT TGGAGGTCAA TTCTTGGGTC GTTTTCTGCA
GAAAATCCAA GGAAGATAAG ATGAGGAGAG AAGGGTTCAT TGCAACTTCT CACAAAGGAA CTTCATCTGC CATTCACAAT
TAA

>Vigan.03G010100.01
MLFLFLFLLC SLPHIAFSSH CTVETATKTF QKCMNLPTQQ ASIAWTFHPH NTTLELVFFG SFISPSGWVG WGINPTSPEM
TGTRALIAFP DPNSGQIVLL PYILDPTVKL QKSPLLSRPL DIHLLSSTAS MYGGKLATVH NGATIQIYGT MKLQTNKTKI
HLVWNRGLYV QGYSPTIHPT TSTDLSSIAT FDVLSGSSAP QHTDLTMLRV IHGTLNAISW GLLLPIGAIT ARYLRHIQAL
GPAWFYAHAG VQLFGFVLGT VGFGIGIRLG QLSPGVEYRL HRKLGIGVFC LGALQTLALL FRPNTRNKFR KYWKSYHHFV
GYSCVVLGFV NVFQGFEVMG ASRSYAKLTY CLGLSTLIGL CIALEVNSWV VFCRKSKEDK MRREGFIATS HKGTSSAIHN
*