GBrowse Details

Vigan.02G319600.01

Basic Information:
Name: Vigan.02G319600.01
Multiple alignment
Variant Information
Position: Chr02:43754734..43760549 (+ strand)
Length: 5816
Functional Information:
Description: Similar to Uncharacterized protein. [K7LBV6, Glycine max]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Cytidyltransferase-like domain (IPR004821)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.51,9.75,10.00,28.55,11.33,5.20,12.24,18.11
Automatic updates:
Name: NM_001253131 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max choline-phosphate cytidylyltransferase B-like (LOC100791886), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:43754734..43754845 (+ strand)
Length: 112
Type: five_prime_UTR
Position: Chr02:43754846..43754973 (+ strand)
Length: 128
Type: CDS
Position: Chr02:43755255..43755368 (+ strand)
Length: 114
Type: CDS
Position: Chr02:43756845..43756940 (+ strand)
Length: 96
Type: CDS
Position: Chr02:43758148..43758190 (+ strand)
Length: 43
Type: CDS
Position: Chr02:43758470..43758625 (+ strand)
Length: 156
Type: CDS
Position: Chr02:43758760..43758840 (+ strand)
Length: 81
Type: CDS
Position: Chr02:43759836..43759946 (+ strand)
Length: 111
Type: CDS
Position: Chr02:43760094..43760213 (+ strand)
Length: 120
Type: CDS
Position: Chr02:43760214..43760549 (+ strand)
Length: 336
Type: three_prime_UTR

>Vigan.02G319600.01 class=Sequence position=Chr02:43754734..43760549 (+ strand)
GGGCGGGGCT CAGGTGGGTC CAGAGAAACG GTTGGGAAGA TCATAGCCTG ATCTTGGACC TCATTCACAC GCACTCTCTT
TTATTTATTC ACTCAGAAGG AGAGAAATAG TGATGGAAGA AGAAGAGCAA AAAGTTATGG AAAAGAGTTG CAAGGAAACT
CCTGTTCGAG TTTATGCTGA CGGGATTTAT GATCTCTTTC ACTTCGGTCA TGCCCGTTCT CTTGAGCAGG CTAAGAAACT
GTAATTCATA CTCCCTACTT CATTTTTCTT TTGGAAAGAA CATTTTTTTA TGACTTGTAG TTGGACATCA TGTTTTATTT
CTTTTGGGTT GTTTGGTGCA TGTTCATGGA CTAAACATAC TTCACTCTAC TAACTCTCAT TTGGGTTAAT TTTACCACTT
CAAAACTGGG TTTTCTGTGT TTTGCTGAGT CATTTTTTTT TCTTTCTTTT TTAAGCATAG TTGTTGTTTG AGGGAAAATG
TTCAAGCTGT TTAAATCCAT TTGTTTTTTT CTCAATTGAA GGTTTCCGAA CACTTATCTC CTTGTTGGAT GCTGCAATGA
TGAGATCACC CATAAGTACA AGGGCAAAAC TGTTATGACT GAGAAGGAAC GCTATGAGTC TCTTCGCCAC TGCAGGTTTT
GTTCTCTTTT CTTTTTCGGG TTTGAATTTT GACTCGTTTT TGCAGGTGTT CCCATATTTA CTGTACACTT CCTGGGAAAG
CTTCTTTCTT ATCAAAGAAT TATGGGTAAA TTATACATAT ACTGTAAAGG GGGTCAACCA ATAAAAAATT GTCAAATATG
AATTTTTTTT TTTTGGATTT TTCAATAGCT ATCTTAAAAA TCATGTTTAC TATGATTTCT AATTTGTTGA TGTCGATACT
CTTTACCCTG TCAGTGAAAG ATTTTACACT TATGAAACTT ACCGGCTCTT TCTTTCATTT ACCCTTTTAT TGGAAATTGA
TTGTATGGTT TCTGACTACG ATAATTTTGT TGACTATTTT TCAGAGTAGT CTGATAAACC GTGAGAGTGA GATTGTAACT
GTAAAAGTAT GCATACAATG CTATAGTTTT GATTTTAGAG TATAGACAAG TCCTGGATGT CCAGCTTTTC GTTTCCATTA
TTAAAACTAG TGTTTGTGGA CTCAAGTGGC TGCCTACTTG AGTACAACTG TGATTGTGCT AATTTGTAGT GCCCAAGTTC
TTTGATCAAT TTATAATATT TAAGTGAATC ATTTTAAGAG GTTGAGTAAA GTTTGAAATC CACTTTCATA AAGTGGTATT
ATAGTCTATC CTAGCAAATT CAACATGATC AAGTTATAAT ATATAAATAG ATGCATAACT CCATTTATAA ACTCATTTTC
TGAGGTTGAG TTGAATTTAA AGTCTATTAT CATAAGATTT TGTTGTTGTA GAAATGAATA TTAGAAGTGG ACTTTAAGCT
TAACTCAATC CCACAAAACC AGCTTGTAGG GACTACCCAT TAATTTCTAC TATCACGCAC AAGATATCTA TACCTCGGCG
TGAAGGGGTG TGTTGGAAGT CCTACATCGA CTAGAGATAA GGCTAATTTA TAATATATAA GTGTGGTACA AACCTCATCT
TACAAGCCGG TTTTGTGTGG TTGAGTTAGA CTTAAAGTCC ACTTCTAATA GTGAATGTTA ATCTTTTTTT TATCTTACTG
CTGAGGGTTT TCTGAGTTAG CTGCATCTTG TAGCTGATTT CAGAAGCTAA GTTCTTATTG TGTTGCTCTA ACCAAATTAT
TGGCTTTCAT TTCATCACCC TTATTTTATT TGTATATGTT GGTGGTTCTT TGGTATTGTT TCATCTGGAT ATACTTTGGA
CGATGGGTTT TACTTCCAAT ACATTTTACT TTGAAAATTA TTTCTTCATC CACGACAAGC TCTGTCTTTT TTTTTTCAGT
CGTCTCCTAA AATCTAACTA GTGGTTGAAA TCTTAAAAAA ATAAAAATTA ACTTGATTCC ATTTGTTCGT CTCACTTATA
AATTGCTTTT GAATTCCTGA TTACATTATA TTAGACCTTT GCATTTTGAA TCTATTAATT GCTAAGACTA TATATTAGTG
TGTGAAGCAT TTTAAATTGT ACTTGCTCCA GGTGGGTTGA TGAAGTTATT CCAGATGCGC CATGGGTAAT CACCAAGGAG
TTCCTTGACA AGCATCAAAT TGACTATGTG GCACATGATA GTCTTCCGTA AGGTTAACCA ACCCCAGGCT ACTCTTTACT
TTTGTATTAC GTTCTTAAGT AAGAAGCATG GATACAATGT AAGATATAGA TATGAAACTA TGACCAAGGA CATGATCCAA
CAGAAACACA GGGAAACAAC AAATTCCTAG AAAAGATATA GGCATGAAAT GGCCAATTGA GTTATATAAA AAATAACCAA
AATAGCATGT TATGATTATA CAATATCATA TCCTTTATAA AACCCTTCAC ATTAAGTCTG GCAAGTGTTA CTGCTTGTTC
TTTAATTTCT TTCAGCATTT TGAATTCTCG TATTGGGAGG TTGAATTTAA AATCCTAATT CCCAAGCATT ATTAAGCTAC
AAATTTCTAA AATTATGACA ATCTAGGTTC TTGTAGTTCT TGTTGCTTAA ACTAATTTTA TTGAAGGCTT GCACGGAATT
TATATCACAG CACTCTCTTT TTTCTGGTGT CTGTTTGTGA TTCATGAATT TAATCAAAAT TTTGCTTACA CCTATTGTAA
AATTTGGCCT TTTGTTAGAC GGGTCTTTTT GTTTTCATTT ATTTATTATG ATTGTTATTA TTTTTCTTTA AGTGTTGCAC
AGATATGGAT ACAATCAGAC AAGTATCAAG AATATTTCAA TACGTAATAT TTTAAAATTA AGATATGGGT ACAATAATGC
ATATTACATA AAGTATAATT ATATTTATGT ATTTCTTATA TCTTTTAATT TATTTTTCTC TCTTTCTTTA TATTTCTTCG
TACAGTTGGT TTTTATATAT ATTTTTCATC ATTATCACAT ATTTACAAGC CTTTAATATT TTTAAAATTT ATTAAAACAT
TATTTTAGTC AAATTTAAAT TAAAATTTCA TCATTTCAGT TATTGTAATA ATAATAATAA TAATTTCATT GCTATTCAAG
AGAAAAAAAA AGAGGTTAGG ATATGACAGA CCCAATTTCT AATGTGGCGA CTACCATACA ATATGCCTAT GCGTATTGGT
CTCCCCTATG GGTATGTACA ATATAAATAT GTTGCCAAAT TTGAAATATC ATCATCATTA TTATTATTAT TTTCACTTGG
TTGTCTTGTG ATACTTCTGT ATTATTCGTA TGATACTGTT CTGCTTGCAT TGCAACACTT GAGTATATAT GATGGTACCA
TTTTCTTCTA GTTCTTCTCA TATATATTAT TACTTTCTTT TTCTATTATC ATAGTTATGC TGATGCAAGT GGAGCTGGAA
AGGATGTGTA TGAATATGTA AGTTCAAGTG ATAGAACCAT GTTCTAATTA AGTTTCCATT ACTTGAATGT CCTCTCTTCC
TGTGCCTGTT TGGCAGCATT CACATCTATT TCTCATAGCA TTCAGTTCTT TATGCCCGTT TTTTTTTTTT TTTTCTAAAA
AAGTATATTT TGATTGGCCT ACATCTGGTT GCATACATTT AACCATGTTA ATCTGTATCA TATTAAGACC ACCTGTAACC
ATCTCAAACT TTTCTGCTGC AATTTATGAT CTTGTGCCTT TTAATTTCTT ATCTAGGTTA AGTCTGTTGG AAAATTTAAG
GAAACAAAGC GGACTGATGG AATTTCTACT TCTGATATTA TAATGAGAAT TATCAAAGAT TATAATCAAT ATGTAATGCG
TAATTTGGAC CGTGGTTACA CAAGAAAGGA ACTAGGTGTC AGCTATGTGA AGGTTTGTTC TTTTGGTTAG CACCTTTGTT
TTGCTTTCTT TCAAATTCTT ATTGTTTTAG TATTCAGTTT CATCATTGGT TTGCTTCATT GCTTAGTGGG GGAACTTATC
TTTGTTACAC AATCTCTTAT TCACAGGAGA AGAGATTGAG AATGAACATG GGACTTAAAA AATTGCAGGA GAGAGTGAAG
AAACAACAAG AGAAAGTGGG AAAAAAGGTA ACAGTAGATT ATGAAATATC CTACTGTCTT TTCAACTTTC ATAGATCCAA
TATTATTATT ATTATTATTA CAATATAATC AAGAGGGTTT ATTTGTAACA AACTTAGTAC ACTCATGAAT ACGTATTTAG
TACTCATTGA TTATAGTGTC TGGAGGTTTC ACTCAGTCAG TAGAAACCTA TGAGATAGTC TCCACTGATT CTACAAGAAA
CATGTGCTAC ATTCTACTGA ATTATGAAGC GTTCCCATTT TCTAATGTCT CTGTCGAAAG ATTCTGTTCT CTTACTCTCT
AAATTCAACA GGCACAAAAA GAAAAGTAAA ATAAAGATTT AAAAATTGTA AAGTGGAAAA TCGAAACATC CTAGACTACC
AAATATTATC TACTGATACA ATCAAAAAAT CATCACAATG AAAATTACAT AACTTATCTA ATGTTCAAAT GATATTCTAG
GAAATCTAGT GCCAAACATC TGTTGTCATT AGTAAGGTCT ATTCTCATCA TAGAACAAAT GTGTAAATAC ATTACATATA
TCAGAGGAGA ACTGAAGTGA TTGGCGACAT GATACTATTA TGGTGAAGTT AGATATGTAG AAGAAAGTGA GATCATATCC
ACCAACATTC TCTTAAACTA AAGCATTTTG TAAACATAAA TTTCTTTAAA TTAGTGGTAG ATATACCATT ACTTTCTCAC
TTTACACATC TCTTCACTTT AGAGGTTTTA AATCTCATTA GACCACAGCA ATCTACTATA TACATTATTG TCATTTTTTT
CTGTCCCTTG CTGAAGGGAC AGTAAAATGT GTCAAATGGT TGTAAGAATT ATAATCTTTA TTCTTTGTAT TACTAGAATT
TGAGTTTGAG TCTAGCTTTG CAAAATCAAT TTGTGAGGAC AAGATTGTTC TCTCACTGGA GTTGATATAG GAGTTGAACA
GTGCTGAATG TGTTTTTTCC TATTCAATAT ACTGGTGATG ACTAATTTGT TGAAATTTGC AGATTCAAAC GGTGGGAAAA
ATTGCTGGAA TGCACCCTAA TGAATGGGTT GAAAATGCAG ATCGATTGGT TGCTGGATTT CTTGAGATGT TTGAAGAAGG
CTGCCATAAA ATGGTAGATT CCTTTTACCT CTCCAAAAGA TTGCTTACTA TAATAACAAA TGACTAGTCT TTGCATCATG
TGACATTGTT CCCTGCTTAA ATATTGCATT GATCTTCTGA TGTGTAATGT ACTAATTTGG TTAGTTTTCT GACATCCCAG
GGAACAGCAA TCAGAGACAG AATACAAGAA CAATTGAGGG CACAACAGCT GAAATCTCTT CTTTATGATG AGTGGGATGA
TGATGATTCA TTCTATGATG GTGAATACTA CTCCGACTAA AGGGGCAAAT AAACTTTTGT GTTTCTGGAT TAAGGATCAT
TCCTATATAT AACTAAGCTA CCCTTTCTGT AAGGAGAATT ACTTGAAGGA TACTGGATTT CATACATGCA AGATGGTTTT
GTACATTATT TTCCTTTGTA CATAGTTTGA TTTGATTATA TTTTCTTGTT ATAAGAGAAT GTAACTTTTA AGAGTACTGG
TGGGACAGAC CTTCAATCAG ACCTTTCTTC TTTACTCTCT TTTTTCTGTT ACTATGCTAA GGGTTTCTTC ACAAGGAAGG
AAATCACATG TGTTTCTTCT TAAGGACTTA ACATCTATTG AAAGTATTAG TTTCTG

>Vigan.02G319600.01
GGGCGGGGCT CAGGTGGGTC CAGAGAAACG GTTGGGAAGA TCATAGCCTG ATCTTGGACC TCATTCACAC GCACTCTCTT
TTATTTATTC ACTCAGAAGG AGAGAAATAG TGATGGAAGA AGAAGAGCAA AAAGTTATGG AAAAGAGTTG CAAGGAAACT
CCTGTTCGAG TTTATGCTGA CGGGATTTAT GATCTCTTTC ACTTCGGTCA TGCCCGTTCT CTTGAGCAGG CTAAGAAACT
GTTTCCGAAC ACTTATCTCC TTGTTGGATG CTGCAATGAT GAGATCACCC ATAAGTACAA GGGCAAAACT GTTATGACTG
AGAAGGAACG CTATGAGTCT CTTCGCCACT GCAGGTGGGT TGATGAAGTT ATTCCAGATG CGCCATGGGT AATCACCAAG
GAGTTCCTTG ACAAGCATCA AATTGACTAT GTGGCACATG ATAGTCTTCC TTATGCTGAT GCAAGTGGAG CTGGAAAGGA
TGTGTATGAA TATGTTAAGT CTGTTGGAAA ATTTAAGGAA ACAAAGCGGA CTGATGGAAT TTCTACTTCT GATATTATAA
TGAGAATTAT CAAAGATTAT AATCAATATG TAATGCGTAA TTTGGACCGT GGTTACACAA GAAAGGAACT AGGTGTCAGC
TATGTGAAGG AGAAGAGATT GAGAATGAAC ATGGGACTTA AAAAATTGCA GGAGAGAGTG AAGAAACAAC AAGAGAAAGT
GGGAAAAAAG ATTCAAACGG TGGGAAAAAT TGCTGGAATG CACCCTAATG AATGGGTTGA AAATGCAGAT CGATTGGTTG
CTGGATTTCT TGAGATGTTT GAAGAAGGCT GCCATAAAAT GGGAACAGCA ATCAGAGACA GAATACAAGA ACAATTGAGG
GCACAACAGC TGAAATCTCT TCTTTATGAT GAGTGGGATG ATGATGATTC ATTCTATGAT GGTGAATACT ACTCCGACTA
AAGGGGCAAA TAAACTTTTG TGTTTCTGGA TTAAGGATCA TTCCTATATA TAACTAAGCT ACCCTTTCTG TAAGGAGAAT
TACTTGAAGG ATACTGGATT TCATACATGC AAGATGGTTT TGTACATTAT TTTCCTTTGT ACATAGTTTG ATTTGATTAT
ATTTTCTTGT TATAAGAGAA TGTAACTTTT AAGAGTACTG GTGGGACAGA CCTTCAATCA GACCTTTCTT CTTTACTCTC
TTTTTTCTGT TACTATGCTA AGGGTTTCTT CACAAGGAAG GAAATCACAT GTGTTTCTTC TTAAGGACTT AACATCTATT
GAAAGTATTA GTTTCTG

>Vigan.02G319600.01
ATGGAAGAAG AAGAGCAAAA AGTTATGGAA AAGAGTTGCA AGGAAACTCC TGTTCGAGTT TATGCTGACG GGATTTATGA
TCTCTTTCAC TTCGGTCATG CCCGTTCTCT TGAGCAGGCT AAGAAACTGT TTCCGAACAC TTATCTCCTT GTTGGATGCT
GCAATGATGA GATCACCCAT AAGTACAAGG GCAAAACTGT TATGACTGAG AAGGAACGCT ATGAGTCTCT TCGCCACTGC
AGGTGGGTTG ATGAAGTTAT TCCAGATGCG CCATGGGTAA TCACCAAGGA GTTCCTTGAC AAGCATCAAA TTGACTATGT
GGCACATGAT AGTCTTCCTT ATGCTGATGC AAGTGGAGCT GGAAAGGATG TGTATGAATA TGTTAAGTCT GTTGGAAAAT
TTAAGGAAAC AAAGCGGACT GATGGAATTT CTACTTCTGA TATTATAATG AGAATTATCA AAGATTATAA TCAATATGTA
ATGCGTAATT TGGACCGTGG TTACACAAGA AAGGAACTAG GTGTCAGCTA TGTGAAGGAG AAGAGATTGA GAATGAACAT
GGGACTTAAA AAATTGCAGG AGAGAGTGAA GAAACAACAA GAGAAAGTGG GAAAAAAGAT TCAAACGGTG GGAAAAATTG
CTGGAATGCA CCCTAATGAA TGGGTTGAAA ATGCAGATCG ATTGGTTGCT GGATTTCTTG AGATGTTTGA AGAAGGCTGC
CATAAAATGG GAACAGCAAT CAGAGACAGA ATACAAGAAC AATTGAGGGC ACAACAGCTG AAATCTCTTC TTTATGATGA
GTGGGATGAT GATGATTCAT TCTATGATGG TGAATACTAC TCCGACTAA

>Vigan.02G319600.01
MEEEEQKVME KSCKETPVRV YADGIYDLFH FGHARSLEQA KKLFPNTYLL VGCCNDEITH KYKGKTVMTE KERYESLRHC
RWVDEVIPDA PWVITKEFLD KHQIDYVAHD SLPYADASGA GKDVYEYVKS VGKFKETKRT DGISTSDIIM RIIKDYNQYV
MRNLDRGYTR KELGVSYVKE KRLRMNMGLK KLQERVKKQQ EKVGKKIQTV GKIAGMHPNE WVENADRLVA GFLEMFEEGC
HKMGTAIRDR IQEQLRAQQL KSLLYDEWDD DDSFYDGEYY SD*