GBrowse Details

Vigan.02G300100.01

Basic Information:
Name: Vigan.02G300100.01
Multiple alignment
Variant Information
Position: Chr02:41567005..41571711 (+ strand)
Length: 4707
Functional Information:
Description: Similar to Cysteine proteinase. [V5N8Z7, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: cysteine-type peptidase activity (GO:0008234)
InterPro: Cysteine peptidase, cysteine active site (IPR000169)
Peptidase C1A, papain C-terminal (IPR000668)
Peptidase C1A, papain (IPR013128)
Proteinase inhibitor I29, cathepsin propeptide (IPR013201)
Cysteine peptidase, histidine active site (IPR025660)
Cysteine peptidase, asparagine active site (IPR025661)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.11,4.46,36.48,1973.82,110.02,1185.88,682.54,75.85
Arabidopsis thaliana homolog: AT3G45310.1
Automatic updates:
Name: NM_001250891 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cysteine protease-like (LOC100170694), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:41567005..41567220 (+ strand)
Length: 216
Type: five_prime_UTR
Position: Chr02:41567221..41567518 (+ strand)
Length: 298
Type: CDS
Position: Chr02:41569393..41569508 (+ strand)
Length: 116
Type: CDS
Position: Chr02:41569913..41569986 (+ strand)
Length: 74
Type: CDS
Position: Chr02:41570089..41570353 (+ strand)
Length: 265
Type: CDS
Position: Chr02:41570598..41570729 (+ strand)
Length: 132
Type: CDS
Position: Chr02:41571008..41571143 (+ strand)
Length: 136
Type: CDS
Position: Chr02:41571311..41571348 (+ strand)
Length: 38
Type: CDS
Position: Chr02:41571349..41571711 (+ strand)
Length: 363
Type: three_prime_UTR

>Vigan.02G300100.01 class=Sequence position=Chr02:41567005..41571711 (+ strand)
AAAGGATCAT ACTATAGAAA TAAAAAATGA TTCTTAAGAT AAAATAGGGA CAAAAAACTA TAATCCACTC AAATTTAAAA
ATATCTCAGA CTCAAAGATA GAAGGTGTCC TAGCGTGGTC CCAAGATACT TCAGATTTGT TGAATACAAA TACAGCGTAT
TTCCATTGAA GATTCCGCAA GAGTGGGAGA GATCAACAGA AAAGAGAGTA AAACACATGG CGCGGTTTTC AGTGGTGTGG
TGCGCGGTGG CGGTGCTATT GTGCGCCGTG GCGAGCGGGT CATGGTTGGA GGATGCGAAT CCGATTCGGA TGGTGTCGGA
CGTGGAGGGG CAGGTGATTC AGGTGATAGG TCAGTGCCGG AGCGCGGTGT CGTTTGCTCG GTTCGTTGGG AGGTTCGGGA
AGAGTTACCA GAACGAGGAA GAGATGAAGC GGAGGTACGA TATATTCTCG CGAAACCTCA GGTTCATCCG CGCCCACAAC
AAGAAACGTT TGCCCTACAC TCTCTCCGTT AATCGTATGT GTCACTCACT CACTCAATCT TCGCTTGCTG TTGCTTTTAC
CCTTTTTGCC GTTTGATTTT TATCAGATTT GATCGGATTC CCATAGTTAA TCATGCTTCT CACTGACTCA GTGTTATTAT
CAAGTTTTTG ATGCTTTACT TATCACTTAC TTTTGTTTTG TTTTTTAAAT TAATTAAGTT TATAGAAATC TGGATTTGAT
TATTTTCAAG TTTCTGTTAA ATAATTTTTT TCTACATCCA AAATATTTCT TTTTCTGATT TCATTCAAGT TGTTTCATTT
TTGTCAAATT ATGTTTCCAT TTTTAAGCAT CTAATCTCTT TCTTCTTTTA TGTTTCTCTA ACGAACTCTA TTTTAAAAAG
ATTAAAAAGT AAGTTAATCG ATGAGCAAAG TAAGTAAAAT CAGAAAGAAC AATAACTTTG AGTGATGATA AACTCAAACA
ACAAATTACT TAAAAAAAAA GAAAAAGAAA AATGTTTACA GCATTCAATA AGATAATTTT TTGTATAGAT TTAATTGAAA
ATATTTGCAG TTAAAGTTTC TTAAAGCTTA ATTAACTTTA AAAAAATAGT GAGTTGTATT GTAACAGTTT ATTTTAAATG
TTATTTTTTT ATTAATAGTA TAAAAATAAA CTTTATAAAA TAAATTAAAA ATAAATTTTT AAACATTAAC TAATAAATAT
AAATATTTTA TTTTTGAAGA ACAAGTAGAT TGATCCGTCG GACTCACTAG TGGATCCATA ATTTTGGAGT AATAATAGAA
GAAATATTAC TCGTTTACTA AGAAATCTTT AGCATAATCA TCCTAAAAGT TAGAAATAAA ATAATGGATG ACTTTATCTC
CAAAGGGTTA TTCGGGAACA ATATAATTTT ATTTTTTATT TTAAATTACA GTACAAAAAT ACTTGGCAAC AAAACACGTA
AGAATACTAT CTAAATTAAA AGTTTGTGGA AACAAACTAC AACAGTTCGA GACGACACTT TTGTACATCA CACTTTAGAC
GAATTTTTTA TAAGTTATTT TTAATAGAGA AAAATAAAAA GGGAAAATTA GGATTGGTTA CTTCGTCAAC AAATTAGTTT
ATACAGTAAT TAACTGTAGA AACTTAATTC TATAATTTTT CTAATTTTTT TAATTTGGAA ATAAGCTAAT TTTAATTTAT
AAAAAAAAAT TCGTATTGCT TAGTTTTTTT CGTACTGTTT CTTTCTAAAA GGGCTTAAGA AGAAACTCTC TGGAACAGGC
CCAAATTAGA TCAATGTACT TGTGCCATTG GTTGAGTTTG ATAAGTCAAG TTGACTAGTA GGTTGAACTA ATTATCCAAG
AGCTAGGTTA AACTCACTTT GCCACGAAAT CATATTTATT TAACATTAGT GGAAACATAG TAATGCTTGG TGTCTGTTTT
TTGATTATCT TATCTTATTC TGCTGATTTA AAACTTAATT TTTGTTATAA TTTTTATTAT TTTACATATT AATGTACATT
AATTTTAATT TTAATATGTT TTTTCTATAT ATTTATTTAA TATAGACACT TAATTCTCTA GTACAGAAAA AGAATATAGA
TACTTCTGTG ATTCATCACA TTTTAATGGT ATTTTGCTAT TGTTTTTTTT TATTTTTATT TATACCTGGT GTATATCACT
ATAATTATAT AAATATTTTA AATTGGTTTA ATTTTTTTTA ATTTGAATCT TCTGTTTATT TCAGTTTTAT ATATTGCATT
ATAATTATGT CATATTTTAT AATTTGTCTT TTCTTTGACA TGTTTAACTG TTTATGCTTT CTGAATTTCA AATTGTGTTT
AAAATGAAAT AAATAGCATG TTTGGTTCGA AACATGCTTT GACGTTATTT ATTTGTCTTA TGAATCAGAT TTTGCTGATT
GGACTTGGGA GGAATTCCAA ACACACAGAC TAGGTGCTGC TCAAAATTGC TCTGCCACTC TTAAAGGCAA CCACAAGCTT
ACCGATGCTG TTCTTCCTCC AGTGGTACGT TTTCAAAATT CTACTTAACT GTACTGTTCC ATACAACATA AGTTTGGCAA
CACCTCTCGT GTTCACTGTC AATCCCTTTT TAACACATCA CATAAATGTT TGACTAAAGA GGTACGTGTG GCAGTTAATA
ATGATAATGT TGGAAACTAA AAGCACAATC ATTCGAAAAC AACATATTAA GAATAAATTG ACTGATGTTC GTGACTTGAA
AAACTAATTT GATGTATTGT TTTTTTTTTC ATCCTATATT CACTAATGAA AAAAAAAATT AATTCTTGAA CATTTGTTTT
TGAGATATAA AGTTGTGTCT TTTTTATTCA ATACCTTTTG CCATAATGTT TAAACGATAC TGTGTAGCAT CATTACTCAG
ATTTTTATTT CATTGGTCAT GTGTTCAGAA AGACTGGAGG CAAGAAAATA TAGTGAGCGC AGTTAAAGAC CAAGGCAGCT
GCGGATCATG CTGGACATTC AGGTAGGTTA CTTTGGGACC CTGAAACACT CTTTGGAATG AACAACGAGT AAGGTACAGC
TTTTAATTTG TGATGATTCT AACCATGATA TCTGCATAAT GCAGCACAAC CGGGGCTTTA GAAGCAGCCT ATGCACAAGC
GCATGGAAAG AGTATCTCTC TTTCTGAGCA GCAACTAGTG GATTGTGCTG GTCATTTCAA CAACTTTGGC TGTAATGGTG
GGTTGCCATC ACAAGCCTTT GAGTACATTA AATACAATGG TGGGCTTGAC ACAGAGGAAG CATATCCTTA CACGGGAAAA
GACGGTGTCT GCAAATTTTC AGCTGAAAAT GTTGGGATTC GAGTCCTTGA TTCTGTCAAC ATCACCTTGG TACTCACTTC
TCTGATTTTG CTTCAATTTT TTTGATTCCT ATGTCCATGG CTTAACACCA GTGACAAAAA CAACTTTTTA TTTATTTCAA
AAAAATTGAC ATCAGTATTA GTGTTGAAAA TGCAATTTTT GTTACTAATG CATTAATTTC TTGCAGTGCG GAATCAAATC
TATCATGGTC TCACGCCTAG ATGGTGTTTA CATTAATTTT TTTAATTTAT TTTATCCTAT GCTTTGACTA CAGGGTGCTG
AGGATGAATT AAAACATGCA GTTGCATTTG TTCGACCAGT TAGTGTGGCC TTTGAGGTTG TTAATGGGTT CCGATTCTAT
GAGAAAGGAG TTTACACCAG TGACACTTGC GGTACCACTC CCCTGGTGAG TCCTACAAAT GATTACCAGG CTTTAGATAG
TCAAGAAAAG AAAAAAAAAT GTCTACTAAA ATCTTCAAAA CATTGTTTGC TACAAGTTTA GGCTTTTTGA CAATTTCTAT
CCAATATATG GTATGTTGTT TTTCGTAACT TACCATGTAC TAGTAGCATC TCAAATGTTA GTTATTGTTT TGATTTGTTC
CAAGTTGTTC TCTTCGTTAC CTTGTATCTT GCACGCCCAT TTTAGTAATT AAAATGATGC CAAAATCCGA ATTTGCTTGG
CAGGATGTGA ACCATGCTGT TCTTGCTGTT GGGTATGGAG TTGAAAATGG TGTCCCATAT TGGCTCATTA AAAACTCATG
GGGAGAATCT TGGGGTGACA ATGGCTACTT CAAGATGGAA TTGGGGAAGA ACATGTGCGG TGAGTATCCA TTAAAGCTCA
GTTCTAAATA AGAAAACCCC TACAGACCAT GCCCCAACGA AAACCAAACT TAAAATGACC TCAATCAATT GTAATTTAAA
ACAAGTGAAC AATTGAAAAT CTGGGTTTGT AATGATGAAC TGATTTTGTT AATTGTTCAT TTTCAGGTGT TGCAACTTGT
GCTTCTTATC CAATTGTGGC CTAAATTGCA TAACAAAATG GTCCCTAGTC TACCACCTCG CTTGCCATGC GTCAAAGTTT
AGAGCATCTG ATGCCCGTAT TAATGATTAA AGATACGTGC CATTGTATAA AGAAAATTAC TGCTAGTTGT GTTGGCACGA
TATAAAATAA GCTAGAAGTT GTTGTAAATG CTTAAGAATA TCATGCACTG GATCGTGTGT ATCACATACT TGATAATGAT
CATAAATTGT TAGTTATCAT AAAAATTGCT GCAAAAGCTG TTTTTAATGG CAAAATAAAA AGAGAGGAAT GAAAAATATG
TATGTAATAT AAACACTTAC CAAACTTTTG ATCGTTTGCT AATATCAACA GCCTATTTTC TTATTAA

>Vigan.02G300100.01
AAAGGATCAT ACTATAGAAA TAAAAAATGA TTCTTAAGAT AAAATAGGGA CAAAAAACTA TAATCCACTC AAATTTAAAA
ATATCTCAGA CTCAAAGATA GAAGGTGTCC TAGCGTGGTC CCAAGATACT TCAGATTTGT TGAATACAAA TACAGCGTAT
TTCCATTGAA GATTCCGCAA GAGTGGGAGA GATCAACAGA AAAGAGAGTA AAACACATGG CGCGGTTTTC AGTGGTGTGG
TGCGCGGTGG CGGTGCTATT GTGCGCCGTG GCGAGCGGGT CATGGTTGGA GGATGCGAAT CCGATTCGGA TGGTGTCGGA
CGTGGAGGGG CAGGTGATTC AGGTGATAGG TCAGTGCCGG AGCGCGGTGT CGTTTGCTCG GTTCGTTGGG AGGTTCGGGA
AGAGTTACCA GAACGAGGAA GAGATGAAGC GGAGGTACGA TATATTCTCG CGAAACCTCA GGTTCATCCG CGCCCACAAC
AAGAAACGTT TGCCCTACAC TCTCTCCGTT AATCATTTTG CTGATTGGAC TTGGGAGGAA TTCCAAACAC ACAGACTAGG
TGCTGCTCAA AATTGCTCTG CCACTCTTAA AGGCAACCAC AAGCTTACCG ATGCTGTTCT TCCTCCAGTG AAAGACTGGA
GGCAAGAAAA TATAGTGAGC GCAGTTAAAG ACCAAGGCAG CTGCGGATCA TGCTGGACAT TCAGCACAAC CGGGGCTTTA
GAAGCAGCCT ATGCACAAGC GCATGGAAAG AGTATCTCTC TTTCTGAGCA GCAACTAGTG GATTGTGCTG GTCATTTCAA
CAACTTTGGC TGTAATGGTG GGTTGCCATC ACAAGCCTTT GAGTACATTA AATACAATGG TGGGCTTGAC ACAGAGGAAG
CATATCCTTA CACGGGAAAA GACGGTGTCT GCAAATTTTC AGCTGAAAAT GTTGGGATTC GAGTCCTTGA TTCTGTCAAC
ATCACCTTGG GTGCTGAGGA TGAATTAAAA CATGCAGTTG CATTTGTTCG ACCAGTTAGT GTGGCCTTTG AGGTTGTTAA
TGGGTTCCGA TTCTATGAGA AAGGAGTTTA CACCAGTGAC ACTTGCGGTA CCACTCCCCT GGATGTGAAC CATGCTGTTC
TTGCTGTTGG GTATGGAGTT GAAAATGGTG TCCCATATTG GCTCATTAAA AACTCATGGG GAGAATCTTG GGGTGACAAT
GGCTACTTCA AGATGGAATT GGGGAAGAAC ATGTGCGGTG TTGCAACTTG TGCTTCTTAT CCAATTGTGG CCTAAATTGC
ATAACAAAAT GGTCCCTAGT CTACCACCTC GCTTGCCATG CGTCAAAGTT TAGAGCATCT GATGCCCGTA TTAATGATTA
AAGATACGTG CCATTGTATA AAGAAAATTA CTGCTAGTTG TGTTGGCACG ATATAAAATA AGCTAGAAGT TGTTGTAAAT
GCTTAAGAAT ATCATGCACT GGATCGTGTG TATCACATAC TTGATAATGA TCATAAATTG TTAGTTATCA TAAAAATTGC
TGCAAAAGCT GTTTTTAATG GCAAAATAAA AAGAGAGGAA TGAAAAATAT GTATGTAATA TAAACACTTA CCAAACTTTT
GATCGTTTGC TAATATCAAC AGCCTATTTT CTTATTAA

>Vigan.02G300100.01
ATGGCGCGGT TTTCAGTGGT GTGGTGCGCG GTGGCGGTGC TATTGTGCGC CGTGGCGAGC GGGTCATGGT TGGAGGATGC
GAATCCGATT CGGATGGTGT CGGACGTGGA GGGGCAGGTG ATTCAGGTGA TAGGTCAGTG CCGGAGCGCG GTGTCGTTTG
CTCGGTTCGT TGGGAGGTTC GGGAAGAGTT ACCAGAACGA GGAAGAGATG AAGCGGAGGT ACGATATATT CTCGCGAAAC
CTCAGGTTCA TCCGCGCCCA CAACAAGAAA CGTTTGCCCT ACACTCTCTC CGTTAATCAT TTTGCTGATT GGACTTGGGA
GGAATTCCAA ACACACAGAC TAGGTGCTGC TCAAAATTGC TCTGCCACTC TTAAAGGCAA CCACAAGCTT ACCGATGCTG
TTCTTCCTCC AGTGAAAGAC TGGAGGCAAG AAAATATAGT GAGCGCAGTT AAAGACCAAG GCAGCTGCGG ATCATGCTGG
ACATTCAGCA CAACCGGGGC TTTAGAAGCA GCCTATGCAC AAGCGCATGG AAAGAGTATC TCTCTTTCTG AGCAGCAACT
AGTGGATTGT GCTGGTCATT TCAACAACTT TGGCTGTAAT GGTGGGTTGC CATCACAAGC CTTTGAGTAC ATTAAATACA
ATGGTGGGCT TGACACAGAG GAAGCATATC CTTACACGGG AAAAGACGGT GTCTGCAAAT TTTCAGCTGA AAATGTTGGG
ATTCGAGTCC TTGATTCTGT CAACATCACC TTGGGTGCTG AGGATGAATT AAAACATGCA GTTGCATTTG TTCGACCAGT
TAGTGTGGCC TTTGAGGTTG TTAATGGGTT CCGATTCTAT GAGAAAGGAG TTTACACCAG TGACACTTGC GGTACCACTC
CCCTGGATGT GAACCATGCT GTTCTTGCTG TTGGGTATGG AGTTGAAAAT GGTGTCCCAT ATTGGCTCAT TAAAAACTCA
TGGGGAGAAT CTTGGGGTGA CAATGGCTAC TTCAAGATGG AATTGGGGAA GAACATGTGC GGTGTTGCAA CTTGTGCTTC
TTATCCAATT GTGGCCTAA

>Vigan.02G300100.01
MARFSVVWCA VAVLLCAVAS GSWLEDANPI RMVSDVEGQV IQVIGQCRSA VSFARFVGRF GKSYQNEEEM KRRYDIFSRN
LRFIRAHNKK RLPYTLSVNH FADWTWEEFQ THRLGAAQNC SATLKGNHKL TDAVLPPVKD WRQENIVSAV KDQGSCGSCW
TFSTTGALEA AYAQAHGKSI SLSEQQLVDC AGHFNNFGCN GGLPSQAFEY IKYNGGLDTE EAYPYTGKDG VCKFSAENVG
IRVLDSVNIT LGAEDELKHA VAFVRPVSVA FEVVNGFRFY EKGVYTSDTC GTTPLDVNHA VLAVGYGVEN GVPYWLIKNS
WGESWGDNGY FKMELGKNMC GVATCASYPI VA*