VIGGS:Variant information

Chr02:41567005 - 41571711

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[SNPs] [Indels]

SNPs

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
41567098	A	G	49	1969.77	1.00	UTR_5_PRIME(\|123\|\|None\|Vigan.02G300100.01)	Vigna nepalensis
41567127	A	G	50	1864.77	1.00	UTR_5_PRIME(\|94\|\|None\|Vigan.02G300100.01)	Vigna nepalensis
41567144	T	G	50	1863.77	1.00	UTR_5_PRIME(\|77\|\|None\|Vigan.02G300100.01)	Vigna nepalensis
41567228	G	A	37	1285.77	0.97	NON_SYNONYMOUS_CODING(MISSENSE\|cGg/cAg\|R3Q\|None\|Vigan.02G300100.01)	Vigna nepalensis
41567654	G	T	52	2000.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01)	Vigna nepalensis
41568105	G	C	79	2982.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4575\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568378	G	A	52	2133.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4302\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568401	T	C	47	1845.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4279\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568497	C	T	50	1923.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4183\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568691	A	G	46	2101.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3989\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568694	T	A	47	2066.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3986\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569526	T	C	51	1871.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3154\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569624	A	C	55	2197.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3056\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569773	A	G	54	1471.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|2907\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41570098	G	C	55	2033.77	1.00	SYNONYMOUS_CODING(SILENT\|ggG/ggC\|G166\|None\|Vigan.02G300100.01), UPSTREAM(\|2582\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41570961	C	T	45	1742.77	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|1719\|\|None\|Vigan.02G300200.01)	Vigna nepalensis

Indels

Position	Ref.	Alt.	Depth	Score	Freq. Of Alt.	Effect	Species
41567975	T	TA	52	1441.73	0.98	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4704\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568027	G	GAA	58	2547.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4652\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41568648	A	AT	49	1484.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|4031\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569022	G	GT	53	1598.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3657\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569076	G	GAA	78	3428.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3603\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569136	A	ATT	65	2646.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3543\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569195	AT	A	53	1577.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|3484\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569758	CTA	C	58	2474.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|2921\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569801	T	TTTTGC	60	2738.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|2878\|\|None\|Vigan.02G300200.01)	Vigna nepalensis
41569816	G	GT	59	2090.73	1.00	INTRON(\|\|\|None\|Vigan.02G300100.01), UPSTREAM(\|2863\|\|None\|Vigan.02G300200.01)	Vigna nepalensis