GBrowse Details

Vigan.02G134900.01

Basic Information:
Name: Vigan.02G134900.01
Multiple alignment
Variant Information
Position: Chr02:12069823..12076114 (+ strand)
Length: 6292
Functional Information:
Description: Similar to Proteasome subunit beta type. [C6SXW4, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:26.36,23.39,39.33,34.87,55.34,72.82,30.39,28.48
Automatic updates:
Name: NM_001250349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative proteasome beta subunit C1 (LOC100306084), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:12069823..12069937 (+ strand)
Length: 115
Type: five_prime_UTR
Position: Chr02:12069938..12070233 (+ strand)
Length: 296
Type: CDS
Position: Chr02:12072064..12072153 (+ strand)
Length: 90
Type: CDS
Position: Chr02:12072561..12072645 (+ strand)
Length: 85
Type: CDS
Position: Chr02:12074836..12074930 (+ strand)
Length: 95
Type: CDS
Position: Chr02:12075521..12075569 (+ strand)
Length: 49
Type: CDS
Position: Chr02:12075570..12076114 (+ strand)
Length: 545
Type: three_prime_UTR

>Vigan.02G134900.01 class=Sequence position=Chr02:12069823..12076114 (+ strand)
TTTATATATT TATTAAATTT AGCACCACGT TAGGGCTTAG TTCCAAACAC TACAGATTTT AGCAAATACC CGTGTATGTG
ACGAAATCAG AAAATTGGTT GATCAGCAGC GAAAGATGTC GATCTTCGAG TACAATGGGA GTGCCCTAGT GGCCATGGTG
GGGAAGAACT GCTTCGCCAT TGCCAGCGAT CGGAGACTCG GGGTTCAGCT CCAGACTATC GCCACCGATT TCCAGAGGAT
TTCCAAGATC CACGACAAGC TTTTCATCGG TCTCTCGGGC CTCGCCACCG ACGCTCAGAC GCTCTACCAG CGCCTCGTTT
TCCGCCACAA ATTGTATCAG CTGCGTGAAG AGAGGGATAT GAAGCCCGAA ACCTTTGCTA GCCTAGTCTC TGCTATTCTC
TACGAGAAAA GGTGTGTCTC TTAATTCTAT CAATTATTCT TAGGATTAGG GTACTTTTGC ACTTTTATCA ATAACGGTGC
CTCTTTGCTT TATCTGAGAA TGAAAAAAAT AAAAAATCGC ATGACAAATA AAGACGCTGT TACCAAACAC GGTGAGTTCT
GAATCCTTCC ATTCCATTAT TGTAACGGTG TAGTAGCTCC AGACTGTGTT CTAGGCCTCG TGGTCAACCG CAGGATGCCG
TGCTCGGTCG TCTATTTAAC TGAAATCTTT TGTTTGCTTT TAAATGTTAA ATTTGCATAG TCGATTTGTA GGTAAATTCT
GTTTTGGTGG CGTTATCCAG ATGTTTTGTT TATATATTGA ACGCCGTCGC TGTGTATTTT ATTTTGGAAT TGACTTTGTT
GGATGTTCAA GTTCTTATTC TAAAACTTGA TGGTGTAACT CTATCTTTCA TAAAAGGAAC GAATATATAA GGTTGGGGTT
AAGGGAGAGA AGATGGGAAA TAGATTTAGT ATTGTTAAGG TAATTCTCGG GGGAGGAAGG GAGACTTGGT ATTATTGAAA
GAATTATGTT CTCATCAGCA GAACATAATA GTGATGCTGC TGCTATGAAT ATGAGATACA GAAACAAAAA TTATGGCTAA
ACATATTCCT ACCTCAGCAT GTCTCCTGTC AACAAACTGA AAGTTGCATC GCTAAAGGTG TAATATCTTG TACGAATATG
CTACTTCAAG TGTTTGACTG ATGGTGTATA TTCAAATTGG CTCGGAATAT TTTCTAACTG AACATGCAGA GTAATATAAG
ACTCTTGTAT TTGTGAACAT AAAATTGTTG TAACTCAATA AAACATTTGT GGAACTGCTC TAGTTTTGTC CATGGCCATG
CAATCTAAAT GTGCTTCATT TTCCTTCTTT TGGTGTGGGA ATGTGTTAAT AAATATTATT AGAAGTCTCA CATCGACTAG
AATTATGGTC AATTTAAAGT ATATATGTAG ATGCAGTCAT CATTTTACAA GTTGGTTTTG TGGGGTTGAT TTAGGCTTAA
AGTCCACTTC TTTACATACT ATATGAGCTA TGAGTTAGAG CTTATTCTAG TGAGATTTGT GTTTGTTTGG CATATCATTC
CACCTGCTAT CGGCCGCTAT TAGGCCACCA CTAATGTCTA GTCTTACGCT AGAGATATAT ACCTCGACAG AGGGGATTGT
ATTAGAAGTT CCACATTTTA GTGATAAAGT CAATTTAGAG TATATAAGTG AGTGAAAATC TCAACTTATA AGCCGGTTAA
GCCGGTTTTG TGGGATTAAG CTTAAAGTTT ACTTTTTAAT ATAATATCAA AGCCATGGTT TAGAGTCTAT CATAGTGAAA
TTTGTTGTTT ATTGGACATA TTATTCTACC AGATATCAGG CCGTTATTGG ACCATTCATT AATGTCTAGT CTCATGCATG
AGATGTATAT ACCTCGGTGT GAGGATTATA TTGGAAGTTC CACATTGACT AGAGTTAAGG CCAATTTAGA GTATATATAT
GGGTGCAAAC TTCATCTCAC AAGTCGGTTT GGTAAGGTTG AGTTAGGTTT AAAGTCTATT TCTTGACAAA CATGATGTTT
AGATAGGATG AAGATCCAGT TTTCTATACT TTAAATAACT ATCAACTGAC TGACTATGGA AAAAAAAGGA AGAGACGTAT
TTTGTGAAGC AAATGAATTT TCCATTATTT CAATGAAGTG GATGTGTTTG TGGAATATTT GTGCACAATT TAAATCATAT
GCATAATTCT ATTTTATGTT TGTGGAAGTT GTCAGCTCAC TTGATTACTG TAAAAGCAAA ATATGTTCTT TTGCATTTCA
GGTTTGGTCC ATACTTTTGC CAACCTGTAA TTGCTGGACT AGGAGATGAA GATAAACCTT TCATTTGCAC CATGGATGCG
ATTGGAGCAA AGTAAGTTGA AGTCTTGTAT AATCTATGCC CTTATTTACG GTTGAGTGTT GAGCAAGGTT AGTGTTTTAG
TGTTTTTTCA AACTACCAAT TTGTTGGAAA AAAATGTTTC TAAATTTTAT TGATATTTAA GGTACCCCTT CCCTGTGCCC
TGAAGTGTTG TTGAATGAAC TCTATGCGCA TAACTTTGAC AGTGAAGCAA TAAATAACTG ATTTTATTTT CTCAATTGGA
TGCACACCGC ACTAAGTATT CTTTAATCTA TTTTTCTTTT GTAGATTTCT TCTATTTTGA AAATCTAAGC AACTTTTTCC
CTTTAGTTAT TAGAACAATC TTTTTATTTT TCATTGAAGC CATATGTTTG TGATGTTAAT GGGTAATAAC ATTTTTTTAT
GCTTTTTTGC TTTGACAGGG AACTTGCAAA AGATTTTGTT GTAGCCGGTA CTGCATCTGA GTCTCTTTAT GGGGCTTGCG
AGTCAATGTT TAAGCCTGAC ATGGTTTGTC TCTATATTTA ATTTGTTGCT TTTGACATCA CTTTTTTTTT TTAATAAAAT
TTGAAATTCT TGCAGTCATG TCTGTACTTG TGTTTTAATA CTAAATTATG AAATAAGTAT ATGCAAATGG ACATGTTCAC
GTATTGCTGA ATCTTAATCG GAATAGCTGC TTGCATATAT TCAGAAGATC ATTTATGTAC AATAGATGGG ATCACATGAT
GTATCTCCTG GGAGCCAACG ATAGCCTAGA AATAGGAAGA ATTTAATTAT CCTATTTTTA TCCATATCTA GAAAAATTGA
AATAAGTTAG CTTTCTTTCT TTTTTATTTA TCTTTTGGAA GAAGTTAGTT ATCCGTTTTT ATCTTCATCT ATGAATGTAT
ATGTTACGTT TCCGGGTAAG AAACGTAATG AATCACGATC ACAGTAGGTA GAAAAGATAA AGAAAGAATG AATTTCTCTT
ATTAATTGGA AAAGAATTCT GTAAACAAAG GATAGTTGGA AGCATAACCT CCCTTACAAA ACAAGGATCA TTGGGAGCAT
AATCTCCCCT CCCTCACAGG ATGTAGTCGC CTATCAACAA ACTCAATAAT CAAAAACCTA ACCCTAACAA TAGCATCTAG
CTTTATTTAT ATTAAATATT TCCCTAGAAT ATAGCTCTAT TTACTATAAT TATCTTATAC TAAACATTTC CCTAGAATAT
AGCTCTATTT ACTATAATTA TCTTATACTG AACATTTCCC TAGAATATAG CTCTATTTAC TATAATTATC TTATACTGAA
TATTTCCCTA GAATATAGTT CTATTTACTA TAATTATCTT ATATTGAATA TTTCTCTGGG ATATAGCTCT ATTTACTATA
ATTATTACCA AATATTTCCC GTCCATGCTA ATTGCTACAA CAGTTAGGAT AGTAACTCTT CAATCGATCG GCTCCCATTC
TTCACCTCTT TCCACCGTTC GGCTCGAGCC CTCACCGCCT TCAGCTGTTA GGCTCGATTC CTTACTTCCT TCCATCGTTC
GGCTTGACCT CTCCCGCCTT CCACCGTTCA GCTTGACCTC TCCCCGCCTT CCACCATTCG GTGCCCTTCT TCTCTCATAT
ACTTTCTTCT TCTCTCGTAT ACCTTCCAAC CCCTAACAAC ATCTATTACC TTATACCCTA TCAGTATATG TGTATGAATA
TAGATACATT TGCATGTATA TTACTGCTGC CTTTAGGAAA ACAGGAGAGT AACCTCTATG TGTTGGGAGT TGGCAGAACT
TAAGGAGATT GGGTATTCTG GTGTTTTTTT AGAATAATCA GGAAGGAGTA TTTTAGTAAT CCATCTTTTA AAGATGAACT
CCTTTGGGAG GGCAGTGTCG TTGTATACAA AGAACTCCAT TAGGAGTCTG TTCTTGGTAC TTTTATCCTT TTATCTCATA
AAATAATAAA CATTTTATAT TCTTACTTTA CATTAATTGG TAGATATTTA ATCTGATACC AATAGGTAGG TACTTGGAAA
CCCACCTTCA AAAGCTAGAT ATTAAGGGAA GAAAGCCGAA CAGTTAAATA CTTCACTGAG TATCTCACTT TTTGAAGTGG
GATTTAGCCA TTCCATAATA CATAAGTATC ATTGCTGTTC TTCTACCACA GAGCTTGTTA CGTGTGCCTA TCATATGCTG
GCTCGAATTA GAAATAGATG TGATGTATTG GAATTGCTTA AGTGATAAGA CTTGTATTTG GAACACTGCT TTATAATAAA
ATATTTTGTC GATAGTAACA CTAGGAAACT CCAGTTTTCA TTTCCAGCGA AGACATCTCA CACTACACAA ATCAGCAAGT
CATTTATTTT CATGTTTTAA TGTTGGTATT ACAAATGGGG TACGTACAAA TAAGAAAGTG TTATTTCATG TGCATGTCTA
CTTGATGTTG AAGGTTCTTT TAATACAGAT TATAACAACT GCAAAATGCA AATCAGGTGT AATATGCCTA AATGTTGGGC
AAAATTGTTG TATGAAATAA GATGTTCTGC AAACTAAAGT TGCTACGAAT AGATGCTCAA GTTTTCAGTT GATTTCCCAT
GTTCTCACGG GTTATCAAAC TTATCATGGT TATGATATAT TCTTGAAACT TCAAAGATGT TTAACTTTTT TTTCATGATC
TTTGACGAGA AGAAGATTAT TCATGTTCCC TCGGTTTCTT AATTGTGACT CAGGAACCAG AGGAATTGTT CGAGACTATC
TCCCAAGCGC TACAATCATC TGTCGATCGA GATTGTTTAA GTGGCTGGGG TGGACATGTT TATGTTGTGT AAGTTTGTGA
TTTCTCCATT TCTCATCATA GTTGACCACA AGTTTTTGGC ATACTGCTGT TACCATTTTG GAAGGCACTA AGCATCCATA
CTTTATACTA GTTGATGATA CTTTTGCCAT ATTCTAGACA AAACAGTAAT AGCATAATGA AATCAAATCC TGATCTACTT
CCAAAGATGG TGTTTTGGTA CATGTTACTC TTTAAATTTC TGTGGGTCAC GATTAATTTT CCTTGTTATG ATAGAACAGA
CACAGTTAAA TATTTTAGGT TTAGGTGAAA CGAGAGTCAC TGCGGTACCA CGTGGATGAC ATAGCAATGC CGACAATATA
CACATGATAA GTGATTGATA AAGCAGCCCC GGAGGGGAGG GGGTAGGATG AAATCGGATT CCTGTAATGA TTTGAAAGAA
AATCTTGTAG CCTTTTCTCC ATTATCATTT ATTTTTCTTT GAGTCATTTT TTTTTAAATT TTCTTCTCCT AAACTAGGAC
ATTTGCATTT AGATGTTTAT TCTAAATTTA ATTTTCGTTA AGACGTTCGT ATATTGTAAT TTTTATGGCT CACTAGTCTT
TTGGTTTATT TACTGCAGCA CCCCAACCGA AGTAAAGGAG ACGATATTGA AAGGAAGAAT GGATTAACTT TTAAGAGTGC
TTGTTTAGAG ACGTACTACT TTCCGAGGTT CCCGAGCGTG AAAGGGGAAC TTTATTGGAT AGACGTTCAA TCCCATTTCA
AATGGAAAAA CAAACATGCT TATAAGTCAA CCAAGTCACC CATTTCTTAT TATTTTGTAA CTTAGCTTGA ATTTAAATGA
TGATCGTTTA CCATCAATTG TGCAAGATAC CTTGTGATTG TGGCATTTAA CCACATGCAC CTTGAAAAGT ACTTCGCACA
GTTTTTAGTC CAGCACTTAG ATTCTCAGTG AAAAGTCACA CTATTCTAGT CAGTCTTGTG CGAATTAAGT TATAATTTTT
GGCAAAATTA CCTTCTCTTT CAAAGGAAAG AAAACAACTG AGATTTTTTT TTCTCTCAAT CAAACATATC TAGAGCTAGA
AGGACCGGCT GCAAACTAGG TATTATAATA GACCAGACTT TGTGCCTATT TTCATTGTTC TTGGTCTAGG GCTAACTGTA
TATGCTAAAT AAGTGAAGCA TTAGTTAAAC ACCAGGTTTG ATGAATAGTG TG

>Vigan.02G134900.01
TTTATATATT TATTAAATTT AGCACCACGT TAGGGCTTAG TTCCAAACAC TACAGATTTT AGCAAATACC CGTGTATGTG
ACGAAATCAG AAAATTGGTT GATCAGCAGC GAAAGATGTC GATCTTCGAG TACAATGGGA GTGCCCTAGT GGCCATGGTG
GGGAAGAACT GCTTCGCCAT TGCCAGCGAT CGGAGACTCG GGGTTCAGCT CCAGACTATC GCCACCGATT TCCAGAGGAT
TTCCAAGATC CACGACAAGC TTTTCATCGG TCTCTCGGGC CTCGCCACCG ACGCTCAGAC GCTCTACCAG CGCCTCGTTT
TCCGCCACAA ATTGTATCAG CTGCGTGAAG AGAGGGATAT GAAGCCCGAA ACCTTTGCTA GCCTAGTCTC TGCTATTCTC
TACGAGAAAA GGTTTGGTCC ATACTTTTGC CAACCTGTAA TTGCTGGACT AGGAGATGAA GATAAACCTT TCATTTGCAC
CATGGATGCG ATTGGAGCAA AGGAACTTGC AAAAGATTTT GTTGTAGCCG GTACTGCATC TGAGTCTCTT TATGGGGCTT
GCGAGTCAAT GTTTAAGCCT GACATGGAAC CAGAGGAATT GTTCGAGACT ATCTCCCAAG CGCTACAATC ATCTGTCGAT
CGAGATTGTT TAAGTGGCTG GGGTGGACAT GTTTATGTTG TCACCCCAAC CGAAGTAAAG GAGACGATAT TGAAAGGAAG
AATGGATTAA CTTTTAAGAG TGCTTGTTTA GAGACGTACT ACTTTCCGAG GTTCCCGAGC GTGAAAGGGG AACTTTATTG
GATAGACGTT CAATCCCATT TCAAATGGAA AAACAAACAT GCTTATAAGT CAACCAAGTC ACCCATTTCT TATTATTTTG
TAACTTAGCT TGAATTTAAA TGATGATCGT TTACCATCAA TTGTGCAAGA TACCTTGTGA TTGTGGCATT TAACCACATG
CACCTTGAAA AGTACTTCGC ACAGTTTTTA GTCCAGCACT TAGATTCTCA GTGAAAAGTC ACACTATTCT AGTCAGTCTT
GTGCGAATTA AGTTATAATT TTTGGCAAAA TTACCTTCTC TTTCAAAGGA AAGAAAACAA CTGAGATTTT TTTTTCTCTC
AATCAAACAT ATCTAGAGCT AGAAGGACCG GCTGCAAACT AGGTATTATA ATAGACCAGA CTTTGTGCCT ATTTTCATTG
TTCTTGGTCT AGGGCTAACT GTATATGCTA AATAAGTGAA GCATTAGTTA AACACCAGGT TTGATGAATA GTGTG

>Vigan.02G134900.01
ATGTCGATCT TCGAGTACAA TGGGAGTGCC CTAGTGGCCA TGGTGGGGAA GAACTGCTTC GCCATTGCCA GCGATCGGAG
ACTCGGGGTT CAGCTCCAGA CTATCGCCAC CGATTTCCAG AGGATTTCCA AGATCCACGA CAAGCTTTTC ATCGGTCTCT
CGGGCCTCGC CACCGACGCT CAGACGCTCT ACCAGCGCCT CGTTTTCCGC CACAAATTGT ATCAGCTGCG TGAAGAGAGG
GATATGAAGC CCGAAACCTT TGCTAGCCTA GTCTCTGCTA TTCTCTACGA GAAAAGGTTT GGTCCATACT TTTGCCAACC
TGTAATTGCT GGACTAGGAG ATGAAGATAA ACCTTTCATT TGCACCATGG ATGCGATTGG AGCAAAGGAA CTTGCAAAAG
ATTTTGTTGT AGCCGGTACT GCATCTGAGT CTCTTTATGG GGCTTGCGAG TCAATGTTTA AGCCTGACAT GGAACCAGAG
GAATTGTTCG AGACTATCTC CCAAGCGCTA CAATCATCTG TCGATCGAGA TTGTTTAAGT GGCTGGGGTG GACATGTTTA
TGTTGTCACC CCAACCGAAG TAAAGGAGAC GATATTGAAA GGAAGAATGG ATTAA

>Vigan.02G134900.01
MSIFEYNGSA LVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDKLF IGLSGLATDA QTLYQRLVFR HKLYQLREER
DMKPETFASL VSAILYEKRF GPYFCQPVIA GLGDEDKPFI CTMDAIGAKE LAKDFVVAGT ASESLYGACE SMFKPDMEPE
ELFETISQAL QSSVDRDCLS GWGGHVYVVT PTEVKETILK GRMD*