Variant information

Chr02:12069823 - 12076114

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 [SNPs] [Indels]

SNPs

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12069891CA381370.771.00INTRON(|||None|Vigan.02G134800.01), UTR_5_PRIME(|47||None|Vigan.02G134900.01)Vigna nepalensis
12070198TC501832.771.00INTRON(|||None|Vigan.02G134800.01), SYNONYMOUS_CODING(SILENT|ttT/ttC|F87|None|Vigan.02G134900.01)Vigna nepalensis
12070352AG572180.771.00INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12070476AG552104.771.00INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12071153AG441785.771.00INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12071687AG532170.771.00INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12072896AT602436.771.00DOWNSTREAM(|4533||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12072996CA582287.771.00DOWNSTREAM(|4433||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073094AT492152.771.00DOWNSTREAM(|4335||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073109TG512365.771.00DOWNSTREAM(|4320||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073111GT532340.771.00DOWNSTREAM(|4318||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073428CT592335.770.95DOWNSTREAM(|4001||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073543CT532188.771.00DOWNSTREAM(|3886||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073573GA51130.770.14DOWNSTREAM(|3856||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), NON_SYNONYMOUS_CODING(MISSENSE|gGc/gAc|G41D|None|Vigan.02G134800.01)Vigna nepalensis
12073578CA49135.770.14DOWNSTREAM(|3851||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), NON_SYNONYMOUS_CODING(MISSENSE|Cat/Aat|H43N|None|Vigan.02G134800.01)Vigna nepalensis
12073579AG49139.770.14DOWNSTREAM(|3850||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), NON_SYNONYMOUS_CODING(MISSENSE|cAt/cGt|H43R|None|Vigan.02G134800.01)Vigna nepalensis
12073608GA47370.770.26DOWNSTREAM(|3821||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), NON_SYNONYMOUS_CODING(MISSENSE|Gag/Aag|E53K|None|Vigan.02G134800.01)Vigna nepalensis
12073628TC49523.770.33DOWNSTREAM(|3801||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), SYNONYMOUS_CODING(SILENT|gcT/gcC|A59|None|Vigan.02G134800.01)Vigna nepalensis
12073645TC461789.771.00DOWNSTREAM(|3784||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01), NON_SYNONYMOUS_CODING(MISSENSE|tTa/tCa|L65S|None|Vigan.02G134800.01)Vigna nepalensis
12074443CT502357.771.00DOWNSTREAM(|2986||None|Vigan.02G135000.01), DOWNSTREAM(|665||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12074731GC492002.771.00DOWNSTREAM(|2698||None|Vigan.02G135000.01), DOWNSTREAM(|953||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12075648TC532110.771.00DOWNSTREAM(|1781||None|Vigan.02G135000.01), DOWNSTREAM(|1870||None|Vigan.02G134800.01), UTR_3_PRIME(|79||None|Vigan.02G134900.01)Vigna nepalensis
12075680GA572236.771.00DOWNSTREAM(|1749||None|Vigan.02G135000.01), DOWNSTREAM(|1902||None|Vigan.02G134800.01), UTR_3_PRIME(|111||None|Vigan.02G134900.01)Vigna nepalensis
12075767AG642455.771.00DOWNSTREAM(|1662||None|Vigan.02G135000.01), DOWNSTREAM(|1989||None|Vigan.02G134800.01), UTR_3_PRIME(|198||None|Vigan.02G134900.01)Vigna nepalensis
12076058CG371449.771.00DOWNSTREAM(|1371||None|Vigan.02G135000.01), DOWNSTREAM(|2280||None|Vigan.02G134800.01), UTR_3_PRIME(|489||None|Vigan.02G134900.01)Vigna nepalensis
12076109AC421673.771.00DOWNSTREAM(|1320||None|Vigan.02G135000.01), DOWNSTREAM(|2331||None|Vigan.02G134800.01), UTR_3_PRIME(|540||None|Vigan.02G134900.01)Vigna nepalensis

Indels

PositionRef.Alt.DepthScoreFreq. Of Alt.EffectSpecies
12070240CCTCTCCG522438.731.00INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073185TCTCCCT582535.731.00DOWNSTREAM(|4243||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12073474TTCTCTGGGATATAGCT673048.731.00DOWNSTREAM(|3954||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12074446TTAC532388.731.00DOWNSTREAM(|2982||None|Vigan.02G135000.01), DOWNSTREAM(|669||None|Vigan.02G134800.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12075388AATT401584.731.00DOWNSTREAM(|1611||None|Vigan.02G134800.01), DOWNSTREAM(|2040||None|Vigan.02G135000.01), INTRON(|||None|Vigan.02G134900.01)Vigna nepalensis
12076004ATTATAATAGACA411807.731.00DOWNSTREAM(|1424||None|Vigan.02G135000.01), DOWNSTREAM(|2227||None|Vigan.02G134800.01), UTR_3_PRIME(|436||None|Vigan.02G134900.01)Vigna nepalensis