GBrowse Details

Vigan.02G093100.01

Basic Information:
Name: Vigan.02G093100.01
Multiple alignment
Variant Information
Position: Chr02:7434343..7438253 (+ strand)
Length: 3911
Functional Information:
Description: Similar to proteasome subunit beta type-6. [XP_003522675.1, Glycine max]
GO: Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
Cellular Component: proteasome core complex (GO:0005839)
Molecular Function: endopeptidase activity (GO:0004175)
Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro: Peptidase T1A, proteasome beta-subunit (IPR000243)
Proteasome, subunit alpha/beta (IPR001353)
Proteasome beta-type subunit, conserved site (IPR016050)
Proteasome B-type subunit (IPR023333)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:223.68,150.50,99.66,68.17,132.08,237.04,107.17,76.36
Arabidopsis thaliana homolog: AT4G31300.2
Automatic updates:
Name: BT051363 NCBI(nuccore)
Organism: Medicago truncatula
Description: UNVERIFIED: Medicago truncatula clone MTYF1_F2_F3_F41G-D-16 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249507 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305513 (LOC100305513), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:7434343..7434448 (+ strand)
Length: 106
Type: five_prime_UTR
Position: Chr02:7434449..7434557 (+ strand)
Length: 109
Type: CDS
Position: Chr02:7434736..7434812 (+ strand)
Length: 77
Type: CDS
Position: Chr02:7435406..7435461 (+ strand)
Length: 56
Type: CDS
Position: Chr02:7435590..7435662 (+ strand)
Length: 73
Type: CDS
Position: Chr02:7436712..7436823 (+ strand)
Length: 112
Type: CDS
Position: Chr02:7437241..7437314 (+ strand)
Length: 74
Type: CDS
Position: Chr02:7437535..7437609 (+ strand)
Length: 75
Type: CDS
Position: Chr02:7437778..7437903 (+ strand)
Length: 126
Type: CDS
Position: Chr02:7437904..7438253 (+ strand)
Length: 350
Type: three_prime_UTR

>Vigan.02G093100.01 class=Sequence position=Chr02:7434343..7438253 (+ strand)
TGTAAAGCAG GACCTGTTTT CTCAATTTCT TCTTATGCTT TATTAGGGCA CTCTCAACAT TTTCACTCTT CCGTTCTTCT
TGTCCTTGCT GCATCGCTGT TGAATCATGG ATCAGAAAGT CGATTTCAGC GCTCCCCATT CCATGGGAAC CACTATCATC
GGCGTTACTT ACAAAGACGG TGTCGTTTTA GGAGCCGATT CTCGAACCAG CACCGGTACA CTCTCTTTCT CCAGCTCAAA
TCCAAACCCA AATTAATTTA GGGTTTTTCG TTTTCAGTGT TTTAAACAGC TTCTTCCTCT GGGTGATTAA TTCCTTGCTT
CATTTTTGAG AATCGAGATT GGATTATTGC TGTTAATTTG GGGAGTAATA ATGGGTCCTT TTTCAACTTG CAGGAGTGTA
TGTTGCCAAC CGGGCATCAG ACAAAATTAC ACAGCTCACT GATAATGTCT ATGTCTGTCG TTCTGGATCG GTATTTATCT
TTCCATCCTA TGACTCTTTT TTAGATGCCA AACTGTTGTT ATTCATGGTG ATCGGTGCCT GTAATTACCC TGGATTTGCT
TCGTGCTTCT GTTAATATGG ATATTTACTT GCTTGCTGTG TCTATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATG CCTTTTCACT CCTCATAATG TATTGTGTTG AACATTTTTG TTAAGGTTTA AAATTATGCG
ATTTCATACA CAGTTTATTA GTTGAATGTA TTGGCGGAGA ATGGGGCTTT TAGTTGTTTG GTATGTTATT ATCAAAGTTC
CCCTGGATTT CTTACATTAT ATATGTTGCT CACTTTCAAT TGTTTGTCTG TCGCTAAAAT CTTGTCAATG TGAGTGGATG
GAGTTTAGTT GGAAGTTCTG TTTGGACTTT TGAAATTAAT AACGTAATTA ATTATTTTGC TTCGTGCTAG CCTCGTGTGA
TACTGAACAT GTTTGGATTC TAATCTGGAA GAAAGATGAT TACGGAATCT CTCATCCACT GTTATAGTTT TATGAACAAA
TTATAATCTG CATTATTTTT CAGGCTGCAG ATTCTCAGAT TGTATCTGAC TATGTGCGTT ACTTCCTCCA TCAACACACG
TAAGTGACTT TATTTCCCTC ATTTTATACT AATTGGATAT GCTCCGCTGG AGGCTGAAGG TTTGGACTAT GATTTAGTGT
GTGTTTACAG TGATATATAC CTTATTGAGA CTTTTCTTTT TCTATAGGAT ACAACTTGGA CAACCTGCAA CAGTTAAAGT
TGCTGCAAAC CTTGTCCGGC TTCTCTCATA CAACAACAAG GTTTGACCTT AAGCCCTGCT CTTTGTAATT CACTTGCATG
GTTGAGTTTC ACCATTAGTG ATAGTATGAA TTCTGAGCTC TATGCATTAC TCTCTTTCCA CAAGATTTGG CTTTAAGGCT
TGTTCTGCTT AAGCTTGAAT TATCTAATGT TTTCTTGTTC ACCTTGGTGA TACATTATCA GGTTCATTTA GACCTTACGT
TACACCTGTA AATTGATAAA GTTGAGACTT TGGGCTAAAT AAATGTTAAA TTAATTTCAC ATTGTTTATT AAAACTAGCT
GTTTCATTGT ATTATTTTTA TTCTAGAGCA GTTGAGCTGT AATCATAGCA TTTATATCCA ATTTCAACGA GGAAGAGACC
AATATATACT ACAAAATGAG AGTTGTGAGA AATGTATAGA CCAAAATCAT AGCGATTACT TTGGAAGAAG AGTTTTCAAA
ACTTGCCCAA CTCAACACCT TTACTCCTGT ACTTGAAATT TTGGTCATCA CTTTTGAACT GGATTAATTG ATCAGTGAAG
TGGATGAGTC AAATTCGATT GTTAGAATTT TCTCATTAAA GGAATATCAC ACAATGCGAA TTTAACGAAT CATCTCTAAT
ATTTAATCAT AGATCTCACT GAGCAACTCA ACATCACTTT GGACTGTTAA GATCAGAATA GTGAAATATT TTAAGTTTAG
GTAATCGTGA TTGTGGAAAA CTTTCCGTTA GTATTAGTAT AACTTTGGAA GGGGTTTTAG GGGACATTTT TTAAGTTGCA
AAGACCTTTT ATATTGGTTG AGTGGGAGAA GGAGAATCAA CTGGGAACAA TGTACTGCAA TTTTCTGACA TAGCTGTCAT
TTATGCTAAC CATTTTCAAT TCTAGATAAG AATTTTCACA TTCAAACGAT AAAGGAAATT TAGTATTCTT ATTCCAAAGA
TTATCAAATG TTCCATTATT GTGTTAACCT GATGGATTCT CCTAGTACTC TCTCTCTCCA TTTATTTAAT ATTGGAGAGT
GGGGTATAAC TGATATTTAA CTTTATTGCA AATTAACTTT CGCTGGCAGA ATTTCTTAGA GACTGGGTTA ATTGTTGGAG
GTTGGGATAA ATATGAAGGT GGACAAATTT TTGGCGTCCC TCTGGGTGGA ACAATAGTAC AGCAACCTTT TGCTATTGGA
GGTATTTAAT TTTAAAATGT GTTTATGACA ATCTTCTTGT TATGATTTCT GTATTCATGT CCTGCCTTTA ATGTGAATAT
CCCTATATAT ATATATTGCT TGTATCAATT GCCCATAATA TTAATTGGAT ATCAGGTATC TGTCTTATTA TCAATTGCCC
ACCCTATCAT GTCATATAAT TATAATTTTT TTTCGCATTC CTATTTTTTT GTCTTGTATC TGTCTGTGGT GTATACATGA
TTTTAGATGT CAATTTGGAA TAAGCCTGGA CCATTGTTTG CTGCAAATGG GTTTATGAGT TTTTGTGTTG AGCTTATTTT
TATTTCTAAA TTTTTCACTG CTAGCCAGTT AGATTTTTCC TTGGGTTGCT GACTTTTGTT TGTTAAGCTT ATGGTTTACT
CGATGTGTCT TTCTGCAGGA TCTGGCTCTA GTTACTTGTA TGGTTTCTTT GACCAAGCCT GGAAAGAGGG AATGAGCAAG
GAGGAAGCTG AGGTATGTGT TTTGATTCCT CCTGTTGCTA TTTCTAAGTT AAACAGTAAA CTCAGGACCA AGAACTATTG
TAGATGTTAG TTTTTGGAGA CCTAATCTGA TTTTCCTGTC ATTGCAACAA CATGCTTCAG ATATGAACAA TGGAAAATAA
CTAGAAATTA TTAGGATGAA ATTGTTATCC CTGTTGATGT ATGCTGACTG TCTACATGAT GTTGTGTGGC AGGATTTAGT
TAAAAAGGCA GTTTCACTGG CTATTGCTCG TGATGGTGCC AGTGGTGGGG TGGTCCGAAC CGTCATAGTA AGACATCTGA
CCAGTGTTTT GTGTTTCTTG AATTATAGTA GGCTTTATAA GGAGGGGTAG GGGAATGAGC AAGAGGCATA ATTTGTATTT
TAGAAATAAG GTTCATACTA TATACATGCA CAGTGATTTG AAGCCACCTG ATTTTAGCTT TTGCAATCCT TGTAGATAAA
CTCAGAGGGA GTGACCAGGA ATTTCTACCC TGGCGACCAA CTTCCATTAT GGCATGAGGA ACTGGAGCCC CATAACTCTT
TGCTTGACAT TCTTGGTGCC CCAGAGCCGA TGAGCATGTG AAGAAGTTGC TGTGTTTCTG AATGGATCCC GGATAGATTA
TATCTTGCCA TCTCTCTTTT ATGAACTGCT TAACGATTTG TGTAGTTGCT TACTTTGGTT GGATATTGTT TTTAGTCGGG
TTTTATCCTT GAGTTATGTA CTATGATTAA CCTTTGTTTC GTTATATAGC TCACAAGTTA CATGCATACT TTCTTAAATT
GATATTGCAA ACAAAACAAC TATCAACTCA TGTTTTAAAC TTTTGTTGGT CCTGCTAGTT AGTAGTATAA AATGGGAGAG
ATCTCAAGAT GCAAGGCTCT ATCATCAAAT TAAAAATGGA CTCTTGAATA TTAGGCTAAC CTTGAGACTG G

>Vigan.02G093100.01
TGTAAAGCAG GACCTGTTTT CTCAATTTCT TCTTATGCTT TATTAGGGCA CTCTCAACAT TTTCACTCTT CCGTTCTTCT
TGTCCTTGCT GCATCGCTGT TGAATCATGG ATCAGAAAGT CGATTTCAGC GCTCCCCATT CCATGGGAAC CACTATCATC
GGCGTTACTT ACAAAGACGG TGTCGTTTTA GGAGCCGATT CTCGAACCAG CACCGGAGTG TATGTTGCCA ACCGGGCATC
AGACAAAATT ACACAGCTCA CTGATAATGT CTATGTCTGT CGTTCTGGAT CGGCTGCAGA TTCTCAGATT GTATCTGACT
ATGTGCGTTA CTTCCTCCAT CAACACACGA TACAACTTGG ACAACCTGCA ACAGTTAAAG TTGCTGCAAA CCTTGTCCGG
CTTCTCTCAT ACAACAACAA GAATTTCTTA GAGACTGGGT TAATTGTTGG AGGTTGGGAT AAATATGAAG GTGGACAAAT
TTTTGGCGTC CCTCTGGGTG GAACAATAGT ACAGCAACCT TTTGCTATTG GAGGATCTGG CTCTAGTTAC TTGTATGGTT
TCTTTGACCA AGCCTGGAAA GAGGGAATGA GCAAGGAGGA AGCTGAGGAT TTAGTTAAAA AGGCAGTTTC ACTGGCTATT
GCTCGTGATG GTGCCAGTGG TGGGGTGGTC CGAACCGTCA TAATAAACTC AGAGGGAGTG ACCAGGAATT TCTACCCTGG
CGACCAACTT CCATTATGGC ATGAGGAACT GGAGCCCCAT AACTCTTTGC TTGACATTCT TGGTGCCCCA GAGCCGATGA
GCATGTGAAG AAGTTGCTGT GTTTCTGAAT GGATCCCGGA TAGATTATAT CTTGCCATCT CTCTTTTATG AACTGCTTAA
CGATTTGTGT AGTTGCTTAC TTTGGTTGGA TATTGTTTTT AGTCGGGTTT TATCCTTGAG TTATGTACTA TGATTAACCT
TTGTTTCGTT ATATAGCTCA CAAGTTACAT GCATACTTTC TTAAATTGAT ATTGCAAACA AAACAACTAT CAACTCATGT
TTTAAACTTT TGTTGGTCCT GCTAGTTAGT AGTATAAAAT GGGAGAGATC TCAAGATGCA AGGCTCTATC ATCAAATTAA
AAATGGACTC TTGAATATTA GGCTAACCTT GAGACTGG

>Vigan.02G093100.01
ATGGATCAGA AAGTCGATTT CAGCGCTCCC CATTCCATGG GAACCACTAT CATCGGCGTT ACTTACAAAG ACGGTGTCGT
TTTAGGAGCC GATTCTCGAA CCAGCACCGG AGTGTATGTT GCCAACCGGG CATCAGACAA AATTACACAG CTCACTGATA
ATGTCTATGT CTGTCGTTCT GGATCGGCTG CAGATTCTCA GATTGTATCT GACTATGTGC GTTACTTCCT CCATCAACAC
ACGATACAAC TTGGACAACC TGCAACAGTT AAAGTTGCTG CAAACCTTGT CCGGCTTCTC TCATACAACA ACAAGAATTT
CTTAGAGACT GGGTTAATTG TTGGAGGTTG GGATAAATAT GAAGGTGGAC AAATTTTTGG CGTCCCTCTG GGTGGAACAA
TAGTACAGCA ACCTTTTGCT ATTGGAGGAT CTGGCTCTAG TTACTTGTAT GGTTTCTTTG ACCAAGCCTG GAAAGAGGGA
ATGAGCAAGG AGGAAGCTGA GGATTTAGTT AAAAAGGCAG TTTCACTGGC TATTGCTCGT GATGGTGCCA GTGGTGGGGT
GGTCCGAACC GTCATAATAA ACTCAGAGGG AGTGACCAGG AATTTCTACC CTGGCGACCA ACTTCCATTA TGGCATGAGG
AACTGGAGCC CCATAACTCT TTGCTTGACA TTCTTGGTGC CCCAGAGCCG ATGAGCATGT GA

>Vigan.02G093100.01
MDQKVDFSAP HSMGTTIIGV TYKDGVVLGA DSRTSTGVYV ANRASDKITQ LTDNVYVCRS GSAADSQIVS DYVRYFLHQH
TIQLGQPATV KVAANLVRLL SYNNKNFLET GLIVGGWDKY EGGQIFGVPL GGTIVQQPFA IGGSGSSYLY GFFDQAWKEG
MSKEEAEDLV KKAVSLAIAR DGASGGVVRT VIINSEGVTR NFYPGDQLPL WHEELEPHNS LLDILGAPEP MSM*