GBrowse Details

Vigan.02G065500.01

Basic Information:
Name: Vigan.02G065500.01
Multiple alignment
Variant Information
Position: Chr02:4906773..4909966 (+ strand)
Length: 3194
Functional Information:
Description: Similar to Ferredoxin-related. [XP_007012420.1, Theobroma cacao]
InterPro: CAP domain (IPR014044)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.30,12.90,44.72,16.24,28.80,128.80,40.77,68.25
Automatic updates:
Name: NM_001248345 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305941 (LOC100305941), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100789560 (LOC100789560), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:4906773..4907030 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr02:4907031..4907106 (+ strand)
Length: 76
Type: CDS
Position: Chr02:4909155..4909762 (+ strand)
Length: 608
Type: CDS
Position: Chr02:4909763..4909966 (+ strand)
Length: 204
Type: three_prime_UTR

>Vigan.02G065500.01 class=Sequence position=Chr02:4906773..4909966 (+ strand)
CGACAGAAAA ATGATGTAAT TTGGTTGGCA ATAACAACTT CAATTTATTT TTTAATGGAA TTTTACTTGC TGTAATGGTA
TATTGCAGAA TCTTTGAGAA CAATGAAGGT GAAAAAAAAA GAGAAAATAT AAAGTTGGGA AGGACCATTC AGTTGGTGGA
ATTTGTTGCA GTTTATTGAG GTTTGAACCA GAAGGCATCA GTTCGAGACA GACACAAAGC AGATCTGTCT TGAACTTCTG
TGTCCTAAAA CAGCAACAAT GGCAAAAACC ATGACCGTGT GGTATCTTTT GCTCACCCTT TCCTTCGTTT ATGTTGCCAC
TGCTGATACT CAAAGTAAGT CCAAATCAAG TCTCTGTTTT GTCTCTATCT ACTGATTTTT GTTTCAGATT TGGAATGTCG
TTGTTAGTGT CTGGGGTACT CTAAGTTTGA TCTGCATTAC AATCCCTTTA AGATGTATTT TTTATTTTAT TTTAAATATT
TTTTACTTAA GTTTTCTTGA TGCGTTCCAT GGTAGCTTCT TCTCATTCTG GATTGTGTTT TTTACTTTTT AAATTTATCG
AGTGTCTGTT TACAATGCCA GTGATGCTGT AGATCTCAAT TGCTTAGAAC TTTCGTGTAT ATGTTTGGTC TCTCACGGGA
GATTGTTTCA TTTTGGCATA GAGATTGATG ACATTTTGGA TCTCGGACTA TAATAGTAGA AAATGGTGAA TAGAACAAGG
AAAATATGTT AAGAATGTAA GCTGATTCTT GATTTGGACG ACCGACCATG TTTGTCTTCC TTCATCTTTA ACTAAAATTC
GTTGAACATC TTGTTTAGGT TTCCTAGTCT TGGAGTATTC CATTCAGGGA TGTGCATCTT CTGTGTGTGA TAGCAATAAC
CCATTTGAGG TTTACTGTTT TGGAGCTAAT CTCCGAGATT GATTTCATTA GAATATAACT TTTGCACTAT CTTTGGCCTT
TCTAGTTTTA AGAAAGAAAT AGAAGTTGTT GATATGATTA TGAAACGATG CAGTTGTAAA GTATATGACA ATGCTTTGTT
TGAAACTGTA ACTTTTTTAT GTCTGGTAAG GAGCAAACAA GGTTTTGAAA AATGATCCGC AACCATTCTT GTAGTTTCAA
CATTAAGGTT TTATGAAGTG TTTGCTACCA CAGTAGTTGC ATTTGTCCTT GATTTCTCGC AATGTCAAAG ATTGTGACAA
AACTGTAACC ATTACTGCAA CCACTGTATA AAAGCTTAGG AGCAACATGA ACTCACCTCT GTAAAAGGTT ATGCCTTTAT
TATTTGAGGC TCAAACTTTT CTGTCCTTCC ACTTCCATCT GTTACAGGGC TTTTGAGAAG TGATGACTGT CATTAGGATT
TAATTTATAG AGCCCTCGAA TGCTGACCTC TTTTATGTTG AAGTGGACTT CTTTAGAAAT TAGGAATTTG GAATAAGATT
TGATATTGGT TCATAGTTGA GCATGTTTAA GTAGACAAAT CTCTAGCATT TATAATAGCT ACTGTAAATC TGTATTTCAG
AGGGTTAAAT TGATTGTTTA AGCCGTACCT TAGTCATCTT GGAAGATATC AAAAGGGTTG GGAATGAAGT GCCAGAAGAA
AGAAAAACAA AATTGTTGCT TTAAAAAAAT TCCTGACCGA TAATGCTCTC AGCGTGGTGG TACTGGCAAT CTACATAATA
TGTCTGAATT AAGCTTGTGT TTGTCAGATG GTAGGTTCTT CAGGGGGGAA TATATTAATA TTAAGAAGTA CATAATTTAT
TAATTGAAGT TTGCTGGTTC CTTTTTCTTT GGATTTGTCA TGTATTATAA GTGTTTGAGA TTTCAGTTTA TGTTTCACTA
CTTGTTTTTG TTTGTTACTG TGTCAAACAT GGACCAGAAA ACCTGGTTTC CTTGCTTCAG CTTGAGACTA CATACATCTT
CTGACATTTT CATTAATTAT ACATACATGA CTATTTCCTC AATACAAAGC CTTCTTCTGA CTTAACGAGA GTTCCCCAGA
ACTCATATGA CTTATTTCCT CAATACAAAG CCTTCTTACT CATAGTCCAT ATTTATTTTC ATAAGATATG ATTTCATTAC
TCTAAATTCA TCTTGCATTT AGTAGTATCT TCCCAAAAAG AAGTGTACAT ATATAGTAAA TGCTAGCAAT ACATGATTCT
ATGATTATGG CTAGCATTAA AGTGCTACAA CTAAATAAGA TAACAAGTAA TGTTTACAGT AATTGATTGG AAATTACATT
AATTACAATA ATTGATAATA TCAAAAAGTT AATATTGGAT GCACAAATAT ACACAAATCA AGGGATCTTG TTTCTAATTG
TCCCCCACTT AGGTGCACTT TAAATTCCCT TTTTTGACTT AATGAACAAA ATTTTGTTGC AGTCAAAATA ACTAACAATC
CTGCTGACAA GTTGGTAGCT GCAATAAACG AAAACAGAAC CGCTCACAAG GTATCAACCT TAACAGACAA CCCGGGTCTT
GCATGTATTG CTCTACAATA CATTAAGGCA TACCAAGGTG ATTGTGATGC TGTGGGTGGA CCTGATGGGA AGAAACCTCC
AGAATCTCAA TTTGCGGAAG TTTTTGCTCC AAACTGTGGT GTTCAGGCAT CAACTCTTGC TCCTATAACT GGTCGTTTCC
TGGGGTGCCA GACTAATTAT GTACATGCAC CCGAGGCATT TTCTGAGATC CTCATAAGGA ACCAAAAGAG CTTAGACATA
CTCTACAGTA GGAACCACAC TCAGCTTGGT GCTGCTGTGA CAGGTACTGA TGGAGGGTCT CCTTATTTCT GGTGTGTGCT
GTTTAGCAGT GGCAAACCTA ACCAAACCTT TGCTTTGGAG GGTGGTGTGG CTAAAATAAC AAAGCCTGGT TGCTTCAGTG
GAGCCAATGA TGAGTGCAGT GGAGCCAGTG ATTATTGGTC ACCGCTCAAT GGGATGTGGG TTTTGGCCAC TTCAGTTCTT
ATTGCAATGG GGTTTGGTTT AGCATTATGA GCATAAATTG AGATATATTG TATGATTTCT ACATGATTTG GAGGAAGGTA
GTCTTTGTTG TATATGAAAG GCTTGGCCTC AGCTATTCTT TTTCCCCCTT GTTTGATTTG TAATTTGAGA AGAGCTTCAT
TTTCCTCACT TTTTTGTTTA CATATATAAA TTTTCTGGTA TTGGCTCTTG CAAATTCTTT TACCTAAGTT TCTT

>Vigan.02G065500.01
CGACAGAAAA ATGATGTAAT TTGGTTGGCA ATAACAACTT CAATTTATTT TTTAATGGAA TTTTACTTGC TGTAATGGTA
TATTGCAGAA TCTTTGAGAA CAATGAAGGT GAAAAAAAAA GAGAAAATAT AAAGTTGGGA AGGACCATTC AGTTGGTGGA
ATTTGTTGCA GTTTATTGAG GTTTGAACCA GAAGGCATCA GTTCGAGACA GACACAAAGC AGATCTGTCT TGAACTTCTG
TGTCCTAAAA CAGCAACAAT GGCAAAAACC ATGACCGTGT GGTATCTTTT GCTCACCCTT TCCTTCGTTT ATGTTGCCAC
TGCTGATACT CAAATCAAAA TAACTAACAA TCCTGCTGAC AAGTTGGTAG CTGCAATAAA CGAAAACAGA ACCGCTCACA
AGGTATCAAC CTTAACAGAC AACCCGGGTC TTGCATGTAT TGCTCTACAA TACATTAAGG CATACCAAGG TGATTGTGAT
GCTGTGGGTG GACCTGATGG GAAGAAACCT CCAGAATCTC AATTTGCGGA AGTTTTTGCT CCAAACTGTG GTGTTCAGGC
ATCAACTCTT GCTCCTATAA CTGGTCGTTT CCTGGGGTGC CAGACTAATT ATGTACATGC ACCCGAGGCA TTTTCTGAGA
TCCTCATAAG GAACCAAAAG AGCTTAGACA TACTCTACAG TAGGAACCAC ACTCAGCTTG GTGCTGCTGT GACAGGTACT
GATGGAGGGT CTCCTTATTT CTGGTGTGTG CTGTTTAGCA GTGGCAAACC TAACCAAACC TTTGCTTTGG AGGGTGGTGT
GGCTAAAATA ACAAAGCCTG GTTGCTTCAG TGGAGCCAAT GATGAGTGCA GTGGAGCCAG TGATTATTGG TCACCGCTCA
ATGGGATGTG GGTTTTGGCC ACTTCAGTTC TTATTGCAAT GGGGTTTGGT TTAGCATTAT GAGCATAAAT TGAGATATAT
TGTATGATTT CTACATGATT TGGAGGAAGG TAGTCTTTGT TGTATATGAA AGGCTTGGCC TCAGCTATTC TTTTTCCCCC
TTGTTTGATT TGTAATTTGA GAAGAGCTTC ATTTTCCTCA CTTTTTTGTT TACATATATA AATTTTCTGG TATTGGCTCT
TGCAAATTCT TTTACCTAAG TTTCTT

>Vigan.02G065500.01
ATGGCAAAAA CCATGACCGT GTGGTATCTT TTGCTCACCC TTTCCTTCGT TTATGTTGCC ACTGCTGATA CTCAAATCAA
AATAACTAAC AATCCTGCTG ACAAGTTGGT AGCTGCAATA AACGAAAACA GAACCGCTCA CAAGGTATCA ACCTTAACAG
ACAACCCGGG TCTTGCATGT ATTGCTCTAC AATACATTAA GGCATACCAA GGTGATTGTG ATGCTGTGGG TGGACCTGAT
GGGAAGAAAC CTCCAGAATC TCAATTTGCG GAAGTTTTTG CTCCAAACTG TGGTGTTCAG GCATCAACTC TTGCTCCTAT
AACTGGTCGT TTCCTGGGGT GCCAGACTAA TTATGTACAT GCACCCGAGG CATTTTCTGA GATCCTCATA AGGAACCAAA
AGAGCTTAGA CATACTCTAC AGTAGGAACC ACACTCAGCT TGGTGCTGCT GTGACAGGTA CTGATGGAGG GTCTCCTTAT
TTCTGGTGTG TGCTGTTTAG CAGTGGCAAA CCTAACCAAA CCTTTGCTTT GGAGGGTGGT GTGGCTAAAA TAACAAAGCC
TGGTTGCTTC AGTGGAGCCA ATGATGAGTG CAGTGGAGCC AGTGATTATT GGTCACCGCT CAATGGGATG TGGGTTTTGG
CCACTTCAGT TCTTATTGCA ATGGGGTTTG GTTTAGCATT ATGA

>Vigan.02G065500.01
MAKTMTVWYL LLTLSFVYVA TADTQIKITN NPADKLVAAI NENRTAHKVS TLTDNPGLAC IALQYIKAYQ GDCDAVGGPD
GKKPPESQFA EVFAPNCGVQ ASTLAPITGR FLGCQTNYVH APEAFSEILI RNQKSLDILY SRNHTQLGAA VTGTDGGSPY
FWCVLFSSGK PNQTFALEGG VAKITKPGCF SGANDECSGA SDYWSPLNGM WVLATSVLIA MGFGLAL*